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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2qjm:A (2.2) BS02 CS2 4.2.1.8 GO:0000287 ... A4XF23 17944491
    2 2qjm:B (2.2) BS02 CS2 4.2.1.8 GO:0000287 ... A4XF23 17944491
    3 2qjm:C (2.2) BS02 CS2 4.2.1.8 GO:0000287 ... A4XF23 17944491
    4 2qjm:D (2.2) BS02 CS2 4.2.1.8 GO:0000287 ... A4XF23 17944491
    5 3dbn:A (2.9) BS02 CS2 4.2.1.8 GO:0006064 ... A4VVI4 19617363
    6 3p93:A (1.8) BS02 CS2 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    7 3p93:B (1.8) BS02 CS2 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    8 3p93:E (1.8) BS02 CS2 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    9 3p93:F (1.8) BS02 CS2 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    10 4eay:A (2.35) BS01 CS2 4.2.1.8 GO:0005975 ... P24215 22796868
    11 4eay:B (2.35) BS01 CS2 4.2.1.8 GO:0005975 ... P24215 22796868
    12 4gme:C (2.0) BS02 CS2 4.2.1.8 GO:0000287 ... Q9AAR4 N/A
    13 4im7:A (1.9) BS01 CS2 1.-.-.- GO:0000166 ... A0A0H2V7F2 N/A
    14 4k1w:A (1.646) BS02 CS2 4.2.1.8 GO:0000287 ... A4XF23 N/A
    15 4k1w:B (1.646) BS02 CS2 4.2.1.8 GO:0000287 ... A4XF23 N/A
    16 4k1w:C (1.646) BS02 CS2 4.2.1.8 GO:0000287 ... A4XF23 N/A
    17 4k1w:D (1.646) BS02 CS2 4.2.1.8 GO:0000287 ... A4XF23 N/A
    18 4kpl:A (2.0) BS01 CS2 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    19 4kpl:B (2.0) BS01 CS2 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    20 4kpl:E (2.0) BS01 CS2 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    21 4kpl:F (2.0) BS01 CS2 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    22 4pc9:A (1.3) BS01 CS2 ? GO:0030288 ... Q16BC9 25540822
    23 7s5f:A (1.72) BS02 CS2 ? GO:0000166 ... A0A1U9WT24 35243499
    24 7s5f:B (1.72) BS02 CS2 ? GO:0000166 ... A0A1U9WT24 35243499
    25 7s5f:C (1.72) BS02 CS2 ? GO:0000166 ... A0A1U9WT24 35243499
    26 7s5f:D (1.72) BS02 CS2 ? GO:0000166 ... A0A1U9WT24 35243499
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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