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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6b4q:A (1.6) BS01 CQG 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    2 6mls:A (1.77) BS01 CQG 4.1.99.2 GO:0006520 ... P31013 N/A
    3 6mls:A (1.77) BS02 CQG 4.1.99.2 GO:0006520 ... P31013 N/A
    4 6mls:B (1.77) BS01 CQG 4.1.99.2 GO:0006520 ... P31013 N/A
    5 6mme:A (1.9) BS01 CQG 4.1.99.2 GO:0006520 ... P31013 N/A
    6 6mme:B (1.9) BS01 CQG 4.1.99.2 GO:0006520 ... P31013 N/A
    7 6mo3:A (1.79) BS01 CQG 4.1.99.2 GO:0006520 ... P31013 N/A
    8 6mo3:B (1.79) BS01 CQG 4.1.99.2 GO:0006520 ... P31013 N/A
    9 6mpd:A (1.79) BS01 CQG 4.1.99.2 GO:0006520 ... P31013 N/A
    10 6mpd:A (1.79) BS02 CQG 4.1.99.2 GO:0006520 ... P31013 N/A
    11 6mpd:B (1.79) BS01 CQG 4.1.99.2 GO:0006520 ... P31013 N/A
    12 6mqq:A (2.05) BS01 CQG 4.1.99.2 GO:0006520 ... P31013 N/A
    13 6nv8:A (2.26) BS01 CQG 4.1.99.2 GO:0006520 ... P31013 N/A
    14 6nv8:B (2.26) BS01 CQG 4.1.99.2 GO:0006520 ... P31013 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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