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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1t9u:A (3.11) BS01 CPF ? GO:0005515 ... P31224 16166543
    2 1t9u:A (3.11) BS02 CPF ? GO:0005515 ... P31224 16166543
    3 2xct:B (3.35) BS04 CPF 5.6.2.2 GO:0003677 ... P66937
    Q99XG5    		 20686482 PDBbind: -logKd/Ki=4.51, IC50=31uM
    4 2xct:D (3.35) BS04 CPF 5.6.2.2 GO:0003677 ... P66937
    Q99XG5    		 20686482 PDBbind: -logKd/Ki=4.51, IC50=31uM
    5 2xct:S (3.35) BS06 CPF 5.6.2.2 GO:0003677 ... P66937
    Q99XG5    		 20686482
    6 4bvv:A (1.8) BS01 CPF 3.4.21.- N/A P08519 N/A
    7 4kra:C (3.32) BS01 CPF ? GO:0006811 ... P37432 N/A
    8 8gjl:C (3.44) BS01 CPF ? GO:0005886 ... A0A1C9A1J1 37289051
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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