Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 99 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1c9y:A (1.9) BS02 CP 2.1.3.3 GO:0000050 ... P00480 10813810
    2 1ep9:A (2.4) BS01 CP 2.1.3.3 GO:0000050 ... P00480 11237854
    3 1fvo:A (2.6) BS01 CP 2.1.3.3 GO:0000050 ... P00480 11237854
    4 1fvo:B (2.6) BS01 CP 2.1.3.3 GO:0000050 ... P00480 11237854
    5 1za2:A (2.5) BS01 CP 2.1.3.2 GO:0004070 ... P0A786 15951418
    6 1za2:A (2.5) BS02 CP 2.1.3.2 GO:0004070 ... P0A786 15951418
    7 1za2:C (2.5) BS01 CP 2.1.3.2 GO:0004070 ... P0A786 15951418
    8 1za2:C (2.5) BS02 CP 2.1.3.2 GO:0004070 ... P0A786 15951418
    9 2air:A (2.0) BS01 CP 2.1.3.2 GO:0004070 ... P0A786 16401065
    10 2air:G (2.0) BS01 CP 2.1.3.2 GO:0004070 ... P0A786 16401065
    11 2fg7:C (2.9) BS02 CP 2.1.3.11 GO:0004585 ... Q5LI27 16704984
    12 2fg7:D (2.9) BS02 CP 2.1.3.11 GO:0004585 ... Q5LI27 16704984
    13 2fg7:E (2.9) BS02 CP 2.1.3.11 GO:0004585 ... Q5LI27 16704984
    14 2fg7:X (2.9) BS02 CP 2.1.3.11 GO:0004585 ... Q5LI27 16704984
    15 2fg7:Y (2.9) BS02 CP 2.1.3.11 GO:0004585 ... Q5LI27 16704984
    16 2fg7:Z (2.9) BS03 CP 2.1.3.11 GO:0004585 ... Q5LI27 16704984
    17 2g7m:C (2.9) BS02 CP 2.1.3.11 GO:0004585 ... Q64Z33 17600144
    18 2g7m:D (2.9) BS02 CP 2.1.3.11 GO:0004585 ... Q64Z33 17600144
    19 2g7m:E (2.9) BS03 CP 2.1.3.11 GO:0004585 ... Q64Z33 17600144
    20 2g7m:X (2.9) BS02 CP 2.1.3.11 GO:0004585 ... Q64Z33 17600144
    21 2g7m:Y (2.9) BS02 CP 2.1.3.11 GO:0004585 ... Q64Z33 17600144
    22 2g7m:Z (2.9) BS03 CP 2.1.3.11 GO:0004585 ... Q64Z33 17600144
    23 2i6u:A (2.2) BS01 CP 2.1.3.3 GO:0004585 ... P9WIT9 18062991
    24 2i6u:B (2.2) BS01 CP 2.1.3.3 GO:0004585 ... P9WIT9 18062991
    25 2i6u:C (2.2) BS01 CP 2.1.3.3 GO:0004585 ... P9WIT9 18062991
    26 3kzm:A (1.95) BS01 CP 2.1.3.9 GO:0004585 ... Q8P8J2 16741992
    27 3kzo:A (1.9) BS02 CP 2.1.3.9 GO:0004585 ... Q8P8J2 16741992
    28 3l02:A (2.3) BS02 CP 2.1.3.9 GO:0004585 ... Q8P8J2 17600144
    29 3l04:A (2.5) BS02 CP 2.1.3.9 GO:0004585 ... Q8P8J2 17600144
    30 3l05:A (2.8) BS02 CP 2.1.3.9 GO:0004585 ... Q8P8J2 17600144
    31 3l06:A (2.81) BS02 CP 2.1.3.9 GO:0004585 ... Q8P8J2 17600144
    32 3mjm:A (1.87) BS04 CP 3.5.2.3 GO:0004151 ... B1IV40 N/A
    33 3mjm:B (1.87) BS04 CP 3.5.2.3 GO:0004151 ... B1IV40 N/A
    34 3r7f:A (2.101) BS01 CP 2.1.3.2 GO:0004070 ... P05654 21663747
    35 3r7f:B (2.101) BS01 CP 2.1.3.2 GO:0004070 ... P05654 21663747
    36 3r7f:B (2.101) BS04 CP 2.1.3.2 GO:0004070 ... P05654 21663747
    37 3r7f:C (2.101) BS01 CP 2.1.3.2 GO:0004070 ... P05654 21663747
    38 3veo:A (2.187) BS01 CP 6.1.2.2 GO:0003824 ... Q70IY1 22383337
    39 3ves:A (2.23) BS01 CP 6.1.2.2 GO:0003824 ... Q70IY1 22383337
    40 3vet:A (2.2) BS02 CP 6.1.2.2 GO:0003824 ... Q70IY1 22383337
    41 3vez:A (2.4) BS04 CP 6.1.2.2 GO:0003824 ... Q70IY1 22383337
    42 3vf2:A (2.9) BS02 CP 6.1.2.2 GO:0003824 ... Q70IY1 22383337
    43 3vf4:A (2.4) BS03 CP 6.1.2.2 GO:0003824 ... Q70IY1 22383337
    44 4h31:A (1.7) BS02 CP 2.1.3.3 GO:0004585 ... Q8DCF5 N/A
    45 4h31:B (1.7) BS02 CP 2.1.3.3 GO:0004585 ... Q8DCF5 N/A
    46 4h31:C (1.7) BS02 CP 2.1.3.3 GO:0004585 ... Q8DCF5 N/A
    47 4jfr:A (2.17) BS01 CP 2.1.3.3 GO:0004585 ... Q8DCF5 N/A
    48 4jfr:B (2.17) BS01 CP 2.1.3.3 GO:0004585 ... Q8DCF5 N/A
    49 4jhx:A (1.85) BS01 CP 2.1.3.3 GO:0004585 ... Q8DCF5 N/A
    50 4jhx:C (1.85) BS01 CP 2.1.3.3 GO:0004585 ... Q8DCF5 N/A
    51 4nf2:A (1.74) BS01 CP 2.1.3.3 GO:0004585 ... Q81M99 N/A
    52 4nf2:B (1.74) BS02 CP 2.1.3.3 GO:0004585 ... Q81M99 N/A
    53 4nf2:C (1.74) BS01 CP 2.1.3.3 GO:0004585 ... Q81M99 N/A
    54 5g1p:A (3.19) BS01 CP 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852
    55 5g1p:B (3.19) BS01 CP 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852
    56 5g1p:C (3.19) BS01 CP 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852
    57 5g1p:D (3.19) BS01 CP 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852 PDBbind: -logKd/Ki=5.20, Kd=6.3uM
    58 5g1p:E (3.19) BS01 CP 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852 PDBbind: -logKd/Ki=5.20, Kd=6.3uM
    59 5g1p:F (3.19) BS01 CP 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852
    60 6hl7:A (2.5) BS01 CP 2.1.3.2 GO:0004070 ... O15804 32129597
    61 6hl7:C (2.5) BS01 CP 2.1.3.2 GO:0004070 ... O15804 32129597
    62 6jkr:A (1.6) BS01 CP 2.1.3.2 GO:0004070 ... O15636 N/A
    63 6jkr:B (1.6) BS01 CP 2.1.3.2 GO:0004070 ... O15636 N/A
    64 6jkr:C (1.6) BS01 CP 2.1.3.2 GO:0004070 ... O15636 N/A
    65 6jkr:D (1.6) BS01 CP 2.1.3.2 GO:0004070 ... O15636 N/A
    66 6jkr:E (1.6) BS01 CP 2.1.3.2 GO:0004070 ... O15636 N/A
    67 6jkr:F (1.6) BS01 CP 2.1.3.2 GO:0004070 ... O15636 N/A
    68 6jks:A (2.1) BS01 CP 2.1.3.2 GO:0004070 ... Q4D3W3 N/A
    69 6jks:B (2.1) BS01 CP 2.1.3.2 GO:0004070 ... Q4D3W3 N/A
    70 6jks:C (2.1) BS01 CP 2.1.3.2 GO:0004070 ... Q4D3W3 N/A
    71 6jks:D (2.1) BS01 CP 2.1.3.2 GO:0004070 ... Q4D3W3 N/A
    72 6jks:E (2.1) BS01 CP 2.1.3.2 GO:0004070 ... Q4D3W3 N/A
    73 6jks:F (2.1) BS01 CP 2.1.3.2 GO:0004070 ... Q4D3W3 N/A
    74 6jl4:B (2.4) BS02 CP 2.1.3.2 GO:0004070 ... O15636 N/A
    75 6ysp:A (1.38) BS01 CP 2.1.3.2 GO:0004070 ... P49077 33574254
    76 6ysp:B (1.38) BS01 CP 2.1.3.2 GO:0004070 ... P49077 33574254
    77 6yvb:A (1.826) BS01 CP 2.1.3.2 GO:0004070 ... P49077 33574254
    78 6yvb:B (1.826) BS01 CP 2.1.3.2 GO:0004070 ... P49077 33574254
    79 6yvb:C (1.826) BS01 CP 2.1.3.2 GO:0004070 ... P49077 33574254
    80 6yvb:D (1.826) BS01 CP 2.1.3.2 GO:0004070 ... P49077 33574254
    81 6yvb:E (1.826) BS01 CP 2.1.3.2 GO:0004070 ... P49077 33574254
    82 6yvb:F (1.826) BS01 CP 2.1.3.2 GO:0004070 ... P49077 33574254
    83 7nnv:A (1.67) BS01 CP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    84 7nnv:B (1.67) BS01 CP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    85 7nnv:C (1.67) BS01 CP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    86 7nnv:D (1.67) BS01 CP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    87 7nnv:E (1.67) BS01 CP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    88 7nnv:F (1.67) BS01 CP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    89 7vx0:A (2.0) BS03 CP ? GO:0003824 ... Q84G19 36329057
    90 7vyj:A (1.98) BS03 CP ? GO:0003824 ... Q84G19 36329057
    91 7vyo:A (2.25) BS02 CP ? GO:0003824 ... Q84G19 36329057
    92 7vyp:A (2.88) BS02 CP ? GO:0003824 ... Q84G19 36329057
    93 7vzn:A (2.1) BS04 CP ? GO:0003824 ... Q84G19 36329057
    94 7vzq:A (2.1) BS01 CP ? GO:0003824 ... Q84G19 36329057
    95 7vzy:A (2.81) BS04 CP ? GO:0003824 ... Q84G19 36329057
    96 8bpl:A (1.58) BS01 CP 2.1.3.2
    3.5.1.2
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... G0S583 36677714
    97 8qev:A (1.55) BS01 CP 2.1.3.3 GO:0004585 ... O50039 38179474
    98 8qev:B (1.55) BS01 CP 2.1.3.3 GO:0004585 ... O50039 38179474
    99 8qev:C (1.55) BS01 CP 2.1.3.3 GO:0004585 ... O50039 38179474
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417