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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1z10:A (1.9) BS02 COU 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=0.27uM
    2 1z10:B (1.9) BS02 COU 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=0.27uM
    3 1z10:C (1.9) BS02 COU 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=0.27uM
    4 1z10:D (1.9) BS02 COU 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=0.27uM
    5 2h90:A (1.42) BS02 COU 1.6.99.1 GO:0000166 ... Q88NF7 16822524 MOAD: Kd=5uM
    6 2h90:A (1.42) BS03 COU 1.6.99.1 GO:0000166 ... Q88NF7 16822524 MOAD: Kd=5uM
    7 2pmj:A (2.4) BS01 COU 3.1.1.4 GO:0004623 ... P59071 N/A
    8 2pwb:A (1.9) BS03 COU 3.4.21.64 GO:0004252 ... P06873 N/A
    9 3crb:A (2.6) BS03 COU 3.4.21.- GO:0005576 ... P24627 N/A
    10 3l5m:A (1.1) BS04 COU 1.6.99.1 GO:0000166 ... Q3ZDM6 20206186 MOAD: Kd=8.4uM
    11 3l5m:A (1.1) BS05 COU 1.6.99.1 GO:0000166 ... Q3ZDM6 20206186 MOAD: Kd=8.4uM
    12 3l66:A (1.28) BS02 COU 1.6.99.1 GO:0000166 ... Q3ZDM6 20206186 MOAD: Kd=20.9uM
    13 3l66:A (1.28) BS03 COU 1.6.99.1 GO:0000166 ... Q3ZDM6 20206186 MOAD: Kd=20.9uM
    14 3l68:A (1.75) BS02 COU 1.6.99.1 GO:0000166 ... Q3ZDM6 20206186 MOAD: Kd=69.2uM
    15 4uti:A (1.099) BS02 COU ? GO:0000166 ... Q3ZDM6 N/A
    16 4utl:A (1.229) BS02 COU 1.6.99.1 GO:0000166 ... Q3ZDM6 N/A
    17 4utl:A (1.229) BS03 COU 1.6.99.1 GO:0000166 ... Q3ZDM6 N/A
    18 4utl:A (1.229) BS04 COU 1.6.99.1 GO:0000166 ... Q3ZDM6 N/A
    19 7h8x:D (1.5) BS01 COU 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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