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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1b6t:B (1.8) BS01 COD 2.7.7.3 GO:0003824 ... P0A6I6 10205156
    2 2grj:A (2.6) BS02 COD 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    3 2grj:B (2.6) BS03 COD 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    4 2grj:C (2.6) BS02 COD 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    5 2grj:D (2.6) BS03 COD 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    6 2grj:E (2.6) BS02 COD 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    7 2grj:F (2.6) BS03 COD 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    8 2grj:G (2.6) BS02 COD 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    9 2grj:H (2.6) BS03 COD 2.7.1.24 GO:0004140 ... Q9X1A7 N/A
    10 3pxu:A (2.1) BS01 COD 2.7.7.3 GO:0003824 ... Q3JW91 21904046
    11 3rba:A (1.59) BS01 COD 2.7.7.3 GO:0003824 ... P9WPA5 N/A
    12 3uf6:A (1.8) BS01 COD ? GO:0016746 ... Q8Y7B7 N/A
    13 3uf6:B (1.8) BS01 COD ? GO:0016746 ... Q8Y7B7 N/A
    14 5o08:A (1.552) BS01 COD 2.7.7.3 GO:0003824 ... B1MDL6 28648615
    15 5o08:B (1.552) BS01 COD 2.7.7.3 GO:0003824 ... B1MDL6 28648615
    16 5o08:C (1.552) BS01 COD 2.7.7.3 GO:0003824 ... B1MDL6 28648615
    17 5ts2:A (2.3) BS01 COD 2.7.7.3 GO:0003824 ... Q9I6D1 N/A
    18 5ts2:B (2.3) BS01 COD 2.7.7.3 GO:0003824 ... Q9I6D1 N/A
    19 5ts2:B (2.3) BS02 COD 2.7.7.3 GO:0003824 ... Q9I6D1 N/A
    20 5ts2:C (2.3) BS01 COD 2.7.7.3 GO:0003824 ... Q9I6D1 N/A
    21 5ts2:D (2.3) BS01 COD 2.7.7.3 GO:0003824 ... Q9I6D1 N/A
    22 5ts2:E (2.3) BS01 COD 2.7.7.3 GO:0003824 ... Q9I6D1 N/A
    23 5ts2:F (2.3) BS01 COD 2.7.7.3 GO:0003824 ... Q9I6D1 N/A
    24 5zzc:A (1.96) BS01 COD 2.7.7.3 GO:0003824 ... B2HUN5 N/A
    25 6a6d:A (2.9) BS01 COD 2.7.7.3 GO:0003824 ... B2HUN5 N/A
    26 6a75:A (2.75) BS01 COD 2.7.7.3 GO:0003824 ... B2HUN5 N/A
    27 6a7d:A (2.74) BS01 COD 2.7.7.3 GO:0003824 ... B2HUN5 N/A
    28 6cxx:A (1.26) BS03 COD 1.1.1.1 GO:0004022 ... P00327 30018019
    29 6cxx:B (1.26) BS03 COD 1.1.1.1 GO:0004022 ... P00327 30018019
    30 6cy3:A (2.3) BS03 COD 1.1.1.1 GO:0004022 ... P00327 30018019
    31 6kkw:A (3.202) BS01 COD 2.7.7.3 GO:0003824 ... B0V8I3 N/A
    32 7ak9:A (2.55) BS01 COD ? GO:0016747 ... Q7CPW9 34556858
    33 7ak9:B (2.55) BS01 COD ? GO:0016747 ... Q7CPW9 34556858
    34 7e44:E (2.0) BS01 COD 3.6.1.-
    3.6.1.22    		 GO:0000210 ... P32664 34074215
    35 7e44:E (2.0) BS03 COD 3.6.1.-
    3.6.1.22    		 GO:0000210 ... P32664 34074215
    36 7e44:F (2.0) BS01 COD 3.6.1.-
    3.6.1.22    		 GO:0000210 ... P32664 34074215
    37 7e44:F (2.0) BS02 COD 3.6.1.-
    3.6.1.22    		 GO:0000210 ... P32664 34074215
    38 8i8n:A () BS02 COD 2.7.7.3 N/A N/A N/A
    39 8i8n:E () BS02 COD 2.7.7.3 N/A N/A N/A
    40 8i8o:A () BS02 COD N/A N/A N/A N/A
    41 8i8o:E () BS02 COD N/A N/A N/A N/A
    42 8i8p:A (2.19) BS01 COD 2.7.7.3 GO:0003824 ... D0C9M9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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