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BioLiP
Download all results in tab-seperated text for 2218 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 2scu:A (2.3) BS01 COA 6.2.1.5 GO:0000166 ... P0AGE9 9917402
    402 2scu:B (2.3) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 9917402
    403 2scu:D (2.3) BS01 COA 6.2.1.5 GO:0000166 ... P0AGE9 9917402
    404 2scu:E (2.3) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 9917402
    405 2tdt:A (2.0) BS01 COA 2.3.1.117 GO:0005737 ... P56220 9671504
    406 2ux9:A (1.4) BS02 COA ? GO:0000166 ... Q5SIE3 17855371
    407 2ux9:B (1.4) BS02 COA ? GO:0000166 ... Q5SIE3 17855371
    408 2ux9:C (1.4) BS03 COA ? GO:0000166 ... Q5SIE3 17855371
    409 2ux9:D (1.4) BS03 COA ? GO:0000166 ... Q5SIE3 17855371
    410 2ux9:E (1.4) BS01 COA ? GO:0000166 ... Q5SIE3 17855371
    411 2ux9:E (1.4) BS04 COA ? GO:0000166 ... Q5SIE3 17855371
    412 2ux9:F (1.4) BS01 COA ? GO:0000166 ... Q5SIE3 17855371
    413 2ux9:F (1.4) BS04 COA ? GO:0000166 ... Q5SIE3 17855371
    414 2v18:B (2.59) BS03 COA ? GO:0000166 ... Q5SIE3 17855371
    415 2v18:B (2.59) BS04 COA ? GO:0000166 ... Q5SIE3 17855371
    416 2v18:C (2.59) BS03 COA ? GO:0000166 ... Q5SIE3 17855371
    417 2v18:C (2.59) BS05 COA ? GO:0000166 ... Q5SIE3 17855371
    418 2v18:D (2.59) BS02 COA ? GO:0000166 ... Q5SIE3 17855371
    419 2v18:D (2.59) BS05 COA ? GO:0000166 ... Q5SIE3 17855371
    420 2v18:E (2.59) BS01 COA ? GO:0000166 ... Q5SIE3 17855371
    421 2v18:E (2.59) BS04 COA ? GO:0000166 ... Q5SIE3 17855371
    422 2v18:F (2.59) BS04 COA ? GO:0000166 ... Q5SIE3 17855371
    423 2v18:F (2.59) BS05 COA ? GO:0000166 ... Q5SIE3 17855371
    424 2v18:G (2.59) BS01 COA ? GO:0000166 ... Q5SIE3 17855371
    425 2v18:G (2.59) BS03 COA ? GO:0000166 ... Q5SIE3 17855371
    426 2v18:I (2.59) BS01 COA ? GO:0000166 ... Q5SIE3 17855371
    427 2v18:I (2.59) BS04 COA ? GO:0000166 ... Q5SIE3 17855371
    428 2v18:J (2.59) BS02 COA ? GO:0000166 ... Q5SIE3 17855371
    429 2v18:J (2.59) BS04 COA ? GO:0000166 ... Q5SIE3 17855371
    430 2v18:K (2.59) BS02 COA ? GO:0000166 ... Q5SIE3 17855371
    431 2v18:K (2.59) BS05 COA ? GO:0000166 ... Q5SIE3 17855371
    432 2v19:A (2.59) BS02 COA ? GO:0000166 ... Q5SIE3 17855371
    433 2v19:A (2.59) BS04 COA ? GO:0000166 ... Q5SIE3 17855371
    434 2v19:B (2.59) BS01 COA ? GO:0000166 ... Q5SIE3 17855371
    435 2v19:B (2.59) BS03 COA ? GO:0000166 ... Q5SIE3 17855371
    436 2v19:C (2.59) BS02 COA ? GO:0000166 ... Q5SIE3 17855371
    437 2v19:C (2.59) BS03 COA ? GO:0000166 ... Q5SIE3 17855371
    438 2v19:D (2.59) BS02 COA ? GO:0000166 ... Q5SIE3 17855371
    439 2v19:D (2.59) BS03 COA ? GO:0000166 ... Q5SIE3 17855371
    440 2v19:E (2.59) BS01 COA ? GO:0000166 ... Q5SIE3 17855371
    441 2v19:E (2.59) BS03 COA ? GO:0000166 ... Q5SIE3 17855371
    442 2v19:F (2.59) BS01 COA ? GO:0000166 ... Q5SIE3 17855371
    443 2v19:F (2.59) BS03 COA ? GO:0000166 ... Q5SIE3 17855371
    444 2v19:G (2.59) BS01 COA ? GO:0000166 ... Q5SIE3 17855371
    445 2v19:G (2.59) BS03 COA ? GO:0000166 ... Q5SIE3 17855371
    446 2v19:H (2.59) BS01 COA ? GO:0000166 ... Q5SIE3 17855371
    447 2v19:H (2.59) BS02 COA ? GO:0000166 ... Q5SIE3 17855371
    448 2v19:I (2.59) BS02 COA ? GO:0000166 ... Q5SIE3 17855371
    449 2v19:I (2.59) BS05 COA ? GO:0000166 ... Q5SIE3 17855371
    450 2v19:J (2.59) BS01 COA ? GO:0000166 ... Q5SIE3 17855371
    451 2v19:J (2.59) BS03 COA ? GO:0000166 ... Q5SIE3 17855371
    452 2v19:K (2.59) BS02 COA ? GO:0000166 ... Q5SIE3 17855371
    453 2v19:K (2.59) BS05 COA ? GO:0000166 ... Q5SIE3 17855371
    454 2v19:L (2.59) BS01 COA ? GO:0000166 ... Q5SIE3 17855371
    455 2v19:L (2.59) BS04 COA ? GO:0000166 ... Q5SIE3 17855371
    456 2v1o:A (1.78) BS01 COA 3.1.2.2 GO:0016790 ... Q91V12 17563367
    457 2v1o:A (1.78) BS02 COA 3.1.2.2 GO:0016790 ... Q91V12 17563367
    458 2v1o:B (1.78) BS01 COA 3.1.2.2 GO:0016790 ... Q91V12 17563367
    459 2v1o:B (1.78) BS02 COA 3.1.2.2 GO:0016790 ... Q91V12 17563367
    460 2v1o:C (1.78) BS01 COA 3.1.2.2 GO:0016790 ... Q91V12 17563367
    461 2v1o:C (1.78) BS02 COA 3.1.2.2 GO:0016790 ... Q91V12 17563367
    462 2v1o:D (1.78) BS01 COA 3.1.2.2 GO:0016790 ... Q91V12 17563367
    463 2v1o:D (1.78) BS02 COA 3.1.2.2 GO:0016790 ... Q91V12 17563367
    464 2v1o:E (1.78) BS01 COA 3.1.2.2 GO:0016790 ... Q91V12 17563367
    465 2v1o:E (1.78) BS02 COA 3.1.2.2 GO:0016790 ... Q91V12 17563367
    466 2v1o:F (1.78) BS01 COA 3.1.2.2 GO:0016790 ... Q91V12 17563367
    467 2v1o:F (1.78) BS02 COA 3.1.2.2 GO:0016790 ... Q91V12 17563367
    468 2vat:A (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    469 2vat:B (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    470 2vat:C (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    471 2vat:D (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    472 2vat:E (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    473 2vat:F (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    474 2vat:G (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    475 2vat:H (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    476 2vat:I (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    477 2vat:J (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    478 2vat:K (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    479 2vat:L (2.2) BS01 COA 2.3.1.175 GO:0004414 ... P39058 18279889
    480 2vfc:A (2.7) BS01 COA 2.3.1.5 GO:0016407 ... B2HIZ6 18005984
    481 2vfc:B (2.7) BS01 COA 2.3.1.5 GO:0016407 ... B2HIZ6 18005984
    482 2vhe:A (1.8) BS01 COA 2.3.1.203 GO:0006486 ... Q0P9D1 18198901
    483 2vhe:B (1.8) BS01 COA 2.3.1.203 GO:0006486 ... Q0P9D1 18198901
    484 2vjk:A (1.97) BS01 COA 2.8.3.16 GO:0003824 ... O06644 18162462
    485 2vjk:B (1.97) BS01 COA 2.8.3.16 GO:0003824 ... O06644 18162462
    486 2vjl:A (2.0) BS01 COA 2.8.3.16 GO:0003824 ... O06644 18162462
    487 2vjl:B (2.0) BS01 COA 2.8.3.16 GO:0003824 ... O06644 18162462
    488 2vjm:A (1.89) BS01 COA 2.8.3.16 GO:0003824 ... O06644 18162462
    489 2vjm:B (1.89) BS01 COA 2.8.3.16 GO:0003824 ... O06644 18162462
    490 2vjo:A (2.2) BS01 COA 2.8.3.16 GO:0003824 ... O06644 18162462
    491 2vjo:B (2.2) BS01 COA 2.8.3.16 GO:0003824 ... O06644 18162462
    492 2vtz:A (2.3) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19016856 MOAD: Kd=307uM
    493 2vtz:B (2.3) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19016856 MOAD: Kd=307uM
    494 2vtz:C (2.3) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19016856 MOAD: Kd=307uM
    495 2vtz:D (2.3) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19016856 MOAD: Kd=307uM
    496 2vu0:A (1.87) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19016856
    497 2vu0:B (1.87) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19016856
    498 2vxk:A (1.8) BS02 COA 2.3.1.4 GO:0004343 ... Q4WCU5 18601654
    499 2vyx:A (1.5) BS02 COA ? GO:0000166 ... Q5SIE3 N/A
    500 2vyx:A (1.5) BS03 COA ? GO:0000166 ... Q5SIE3 N/A
    501 2vyx:B (1.5) BS03 COA ? GO:0000166 ... Q5SIE3 N/A
    502 2vyx:B (1.5) BS04 COA ? GO:0000166 ... Q5SIE3 N/A
    503 2vyx:C (1.5) BS03 COA ? GO:0000166 ... Q5SIE3 N/A
    504 2vyx:C (1.5) BS04 COA ? GO:0000166 ... Q5SIE3 N/A
    505 2vyx:D (1.5) BS02 COA ? GO:0000166 ... Q5SIE3 N/A
    506 2vyx:D (1.5) BS04 COA ? GO:0000166 ... Q5SIE3 N/A
    507 2vyx:E (1.5) BS02 COA ? GO:0000166 ... Q5SIE3 N/A
    508 2vyx:E (1.5) BS04 COA ? GO:0000166 ... Q5SIE3 N/A
    509 2vyx:F (1.5) BS04 COA ? GO:0000166 ... Q5SIE3 N/A
    510 2vyx:F (1.5) BS05 COA ? GO:0000166 ... Q5SIE3 N/A
    511 2vyx:G (1.5) BS02 COA ? GO:0000166 ... Q5SIE3 N/A
    512 2vyx:G (1.5) BS04 COA ? GO:0000166 ... Q5SIE3 N/A
    513 2vyx:H (1.5) BS02 COA ? GO:0000166 ... Q5SIE3 N/A
    514 2vyx:H (1.5) BS04 COA ? GO:0000166 ... Q5SIE3 N/A
    515 2vyx:I (1.5) BS01 COA ? GO:0000166 ... Q5SIE3 N/A
    516 2vyx:I (1.5) BS04 COA ? GO:0000166 ... Q5SIE3 N/A
    517 2vyx:J (1.5) BS03 COA ? GO:0000166 ... Q5SIE3 N/A
    518 2vyx:J (1.5) BS04 COA ? GO:0000166 ... Q5SIE3 N/A
    519 2vyx:K (1.5) BS03 COA ? GO:0000166 ... Q5SIE3 N/A
    520 2vyx:K (1.5) BS04 COA ? GO:0000166 ... Q5SIE3 N/A
    521 2vyx:L (1.5) BS01 COA ? GO:0000166 ... Q5SIE3 N/A
    522 2vyx:L (1.5) BS04 COA ? GO:0000166 ... Q5SIE3 N/A
    523 2wat:A (2.2) BS01 COA 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 19679086
    524 2wat:A (2.2) BS02 COA 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 19679086
    525 2wat:B (2.2) BS01 COA 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 19679086
    526 2wat:B (2.2) BS02 COA 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 19679086
    527 2wat:C (2.2) BS01 COA 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 19679086
    528 2wat:C (2.2) BS02 COA 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 19679086
    529 2wat:D (2.2) BS02 COA 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 19679086
    530 2wat:E (2.2) BS01 COA 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 19679086
    531 2wat:E (2.2) BS02 COA 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 19679086
    532 2wat:F (2.2) BS01 COA 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 19679086
    533 2wdo:A (1.56) BS02 COA 2.7.8.7 GO:0000287 ... O86785 21595442
    534 2wds:A (1.35) BS01 COA 2.7.8.7 GO:0000287 ... O86785 21595442 MOAD: Kd=0.45uM
    535 2wdy:A (1.4) BS01 COA 2.7.8.7 GO:0000287 ... O86785 21595442 MOAD: Kd=0.85uM
    536 2wh5:F (2.6) BS01 COA ? GO:0000062 ... Q8NC06 N/A
    537 2wkt:A (2.0) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19842716 MOAD: Kd=49uM
    538 2wkt:B (2.0) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19842716 MOAD: Kd=49uM
    539 2wkt:C (2.0) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19842716 MOAD: Kd=49uM
    540 2wkt:D (2.0) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19842716 MOAD: Kd=49uM
    541 2wkv:A (2.5) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19842716 MOAD: Kd=128uM
    542 2wkv:B (2.5) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19842716 MOAD: Kd=128uM
    543 2wkv:C (2.5) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19842716 MOAD: Kd=128uM
    544 2wkv:D (2.5) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19842716 MOAD: Kd=128uM
    545 2wl4:A (1.8) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19842716 MOAD: Kd=64uM
    546 2wl4:B (1.8) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19842716 MOAD: Kd=64uM
    547 2wl5:A (1.8) BS02 COA 2.3.1.9 GO:0003985 ... P07097 19842716 MOAD: Kd=30uM
    548 2wl5:B (1.8) BS01 COA 2.3.1.9 GO:0003985 ... P07097 19842716 MOAD: Kd=30uM
    549 2wle:A (2.19) BS01 COA 2.3.1.- GO:0005829 ... Q93S40 19525232
    550 2wle:B (2.19) BS01 COA 2.3.1.- GO:0005829 ... Q93S40 19525232
    551 2wle:C (2.19) BS01 COA 2.3.1.- GO:0005829 ... Q93S40 19525232
    552 2wle:C (2.19) BS02 COA 2.3.1.- GO:0005829 ... Q93S40 19525232
    553 2x58:A (2.8) BS02 COA 1.1.1.35
    4.2.1.17
    5.3.3.8    		 GO:0003824 ... P07896 20463028
    554 2x58:B (2.8) BS01 COA 1.1.1.35
    4.2.1.17
    5.3.3.8    		 GO:0003824 ... P07896 20463028
    555 2x7b:A (1.95) BS01 COA 2.3.1.255
    2.3.1.258    		 GO:0004596 ... Q980R9 20419351
    556 2yiz:A (1.7) BS01 COA ? GO:0000166 ... Q8VK10 21897938
    557 2yiz:B (1.7) BS01 COA ? GO:0000166 ... Q8VK10 21897938
    558 2yiz:C (1.7) BS01 COA ? GO:0000166 ... Q8VK10 21897938
    559 2yiz:D (1.7) BS02 COA ? GO:0000166 ... Q8VK10 21897938
    560 2yj0:A (2.4) BS02 COA ? GO:0000166 ... Q8VK10 21897938
    561 2yj0:B (2.4) BS03 COA ? GO:0000166 ... Q8VK10 21897938
    562 2yj0:B (2.4) BS06 COA ? GO:0000166 ... Q8VK10 21897938
    563 2yj0:C (2.4) BS02 COA ? GO:0000166 ... Q8VK10 21897938
    564 2yj0:D (2.4) BS03 COA ? GO:0000166 ... Q8VK10 21897938
    565 2yj0:E (2.4) BS02 COA ? GO:0000166 ... Q8VK10 21897938
    566 2yj0:E (2.4) BS04 COA ? GO:0000166 ... Q8VK10 21897938
    567 2yj0:F (2.4) BS02 COA ? GO:0000166 ... Q8VK10 21897938
    568 2yj0:F (2.4) BS04 COA ? GO:0000166 ... Q8VK10 21897938
    569 2zba:A (2.0) BS01 COA 2.3.1.- GO:0016740 ... O94197 17923480
    570 2zba:B (2.0) BS01 COA 2.3.1.- GO:0016740 ... O94197 17923480
    571 2zba:C (2.0) BS01 COA 2.3.1.- GO:0016740 ... O94197 17923480
    572 2zba:D (2.0) BS01 COA 2.3.1.- GO:0016740 ... O94197 17923480
    573 2zsd:A (2.5) BS01 COA 2.7.1.33 GO:0004594 ... P9WPA7 19307712 MOAD: Ka=212000M^-1
    574 2zsd:A (2.5) BS02 COA 2.7.1.33 GO:0004594 ... P9WPA7 19307712 MOAD: Ka=212000M^-1
    575 2zw4:A (2.7) BS01 COA ? GO:0005737 ... Q53796 19889644
    576 2zw4:C (2.7) BS01 COA ? GO:0005737 ... Q53796 19889644
    577 2zw5:A (2.4) BS01 COA ? GO:0005737 ... Q53796 19889644
    578 2zw5:B (2.4) BS01 COA ? GO:0005737 ... Q53796 19889644
    579 2zw7:A (2.8) BS01 COA ? GO:0005737 ... Q53796 19889644
    580 3awj:A (2.2) BS01 COA ? GO:0009058 ... A3E7Z7 21825160
    581 3b2s:A (1.92) BS02 COA ? GO:0016740 ... O42692 17923480
    582 3b7k:A (2.7) BS01 COA 3.1.2.1 GO:0016790 ... Q8WYK0 N/A
    583 3b7k:B (2.7) BS01 COA 3.1.2.1 GO:0016790 ... Q8WYK0 N/A
    584 3b7k:C (2.7) BS01 COA 3.1.2.1 GO:0016790 ... Q8WYK0 N/A
    585 3b8g:A (2.6) BS01 COA 2.3.1.1 GO:0004042 ... Q5FAK7 18184660
    586 3bj7:A (2.2) BS01 COA 2.3.1.57 GO:0004145 ... P48026 18690703
    587 3bj7:B (2.2) BS01 COA 2.3.1.57 GO:0004145 ... P48026 18690703
    588 3bj7:C (2.2) BS01 COA 2.3.1.57 GO:0004145 ... P48026 18690703
    589 3bj7:D (2.2) BS01 COA 2.3.1.57 GO:0004145 ... P48026 18690703
    590 3bj8:A (2.3) BS01 COA 2.3.1.57 GO:0004145 ... P48026 18690703
    591 3bj8:B (2.3) BS01 COA 2.3.1.57 GO:0004145 ... P48026 18690703
    592 3bj8:C (2.3) BS01 COA 2.3.1.57 GO:0004145 ... P48026 18690703
    593 3bj8:D (2.3) BS01 COA 2.3.1.57 GO:0004145 ... P48026 18690703
    594 3cgb:A (1.9) BS01 COA ? GO:0000166 ... A0A6L7HMK7 18399646
    595 3cgb:A (1.9) BS03 COA ? GO:0000166 ... A0A6L7HMK7 18399646
    596 3cgb:B (1.9) BS01 COA ? GO:0000166 ... A0A6L7HMK7 18399646
    597 3cgb:B (1.9) BS03 COA ? GO:0000166 ... A0A6L7HMK7 18399646
    598 3cgc:A (2.3) BS01 COA ? GO:0000166 ... A0A6L7HMK7 18399646
    599 3cgc:A (2.3) BS03 COA ? GO:0000166 ... A0A6L7HMK7 18399646
    600 3cgc:B (2.3) BS01 COA ? GO:0000166 ... A0A6L7HMK7 18399646
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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