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BioLiP
Download all results in tab-seperated text for 2218 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a59:A (2.09) BS01 COA 2.3.3.16
    2.3.3.5    		 GO:0004108 ... O34002 9551556
    2 1aca:A (-1.00) BS01 COA ? GO:0000062 ... P07107 8503960
    3 1aj8:A (1.9) BS01 COA 2.3.3.16 GO:0004108 ... Q53554 9254593
    4 1aj8:B (1.9) BS01 COA 2.3.3.16 GO:0004108 ... Q53554 9254593
    5 1bo4:A (2.3) BS01 COA ? GO:0016740 ... Q53396 9727487
    6 1bo4:B (2.3) BS01 COA ? GO:0016740 ... Q53396 9727487
    7 1bq6:A (1.56) BS01 COA 2.3.1.74 GO:0009058 ... P30074 10426957
    8 1cm0:A (2.3) BS01 COA 2.3.1.48
    2.3.1.57    		 GO:0004402 ... Q92831 10393169 BindingDB: IC50=41910nM
    9 1cm0:B (2.3) BS01 COA 2.3.1.48
    2.3.1.57    		 GO:0004402 ... Q92831 10393169 BindingDB: IC50=41910nM
    10 1cqi:A (3.3) BS02 COA 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    11 1cqi:B (3.3) BS03 COA 6.2.1.5 GO:0000287 ... P0A836 10625475
    12 1cqi:D (3.3) BS02 COA 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    13 1cqj:A (2.9) BS02 COA 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    14 1cqj:B (2.9) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 10625475
    15 1cqj:B (2.9) BS02 COA 6.2.1.5 GO:0000287 ... P0A836 10625475
    16 1cqj:D (2.9) BS02 COA 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    17 1cqj:E (2.9) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 10625475
    18 1d6h:A (2.15) BS01 COA 2.3.1.74 GO:0009058 ... P30074 10653632 MOAD: Kd=128nM
    19 1dlv:A (2.29) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10764581
    20 1dlv:B (2.29) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10764581
    21 1dlv:C (2.29) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10764581
    22 1dlv:D (2.29) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10764581
    23 1dq8:A (2.1) BS01 COA 1.1.1.34 GO:0004420 ... P04035 10698924
    24 1dq8:B (2.1) BS02 COA 1.1.1.34 GO:0004420 ... P04035 10698924
    25 1dq8:C (2.1) BS01 COA 1.1.1.34 GO:0004420 ... P04035 10698924
    26 1dq8:D (2.1) BS01 COA 1.1.1.34 GO:0004420 ... P04035 10698924
    27 1dqa:A (2.0) BS01 COA 1.1.1.34 GO:0004420 ... P04035 10698924
    28 1dqa:B (2.0) BS03 COA 1.1.1.34 GO:0004420 ... P04035 10698924
    29 1dqa:C (2.0) BS01 COA 1.1.1.34 GO:0004420 ... P04035 10698924
    30 1dqa:D (2.0) BS03 COA 1.1.1.34 GO:0004420 ... P04035 10698924
    31 1ebl:A (1.8) BS01 COA 2.3.1.180 GO:0004315 ... P0A6R0 10673437
    32 1ebl:B (1.8) BS01 COA 2.3.1.180 GO:0004315 ... P0A6R0 10673437
    33 1esm:A (2.5) BS01 COA 2.7.1.33 GO:0004594 ... P0A6I3 10862768
    34 1esm:B (2.5) BS01 COA 2.7.1.33 GO:0004594 ... P0A6I3 10862768
    35 1esm:C (2.5) BS01 COA 2.7.1.33 GO:0004594 ... P0A6I3 10862768
    36 1esm:D (2.5) BS01 COA 2.7.1.33 GO:0004594 ... P0A6I3 10862768
    37 1f7l:A (1.5) BS02 COA 2.7.8.7 GO:0000287 ... P96618 10997907
    38 1fy7:A (2.0) BS01 COA 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q08649 11106757
    39 1h16:A (1.53) BS01 COA 2.3.1.54 GO:0003824 ... P09373 12163496
    40 1h17:A (1.75) BS01 COA 2.3.1.54 GO:0003824 ... P09373 12163496
    41 1h1t:A (1.78) BS01 COA 2.7.7.3 GO:0003824 ... P0A6I6 12837781
    42 1h9g:A (2.1) BS01 COA ? GO:0000062 ... P0A8V6 11296236
    43 1hbk:A (2.0) BS01 COA ? GO:0000062 ... Q8IK57 11491287
    44 1hnd:A (1.6) BS01 COA 2.3.1.180 GO:0004315 ... P0A6R0 11243824
    45 1hnh:A (1.9) BS01 COA 2.3.1.180 GO:0004315 ... P0A6R0 11243824
    46 1hv9:A (2.1) BS01 COA 2.3.1.157
    2.7.7.23    		 GO:0000287 ... P0ACC7 11329257
    47 1hv9:B (2.1) BS02 COA 2.3.1.157
    2.7.7.23    		 GO:0000287 ... P0ACC7 11329257
    48 1i1d:A (1.8) BS02 COA 2.3.1.4 GO:0004343 ... P43577 11278591
    49 1i1d:B (1.8) BS02 COA 2.3.1.4 GO:0004343 ... P43577 11278591
    50 1ixe:A (2.3) BS01 COA 2.3.3.16 GO:0004108 ... Q5SIM6 27493854
    51 1ixe:B (2.3) BS01 COA 2.3.3.16 GO:0004108 ... Q5SIM6 27493854
    52 1ixe:C (2.3) BS01 COA 2.3.3.16 GO:0004108 ... Q5SIM6 27493854
    53 1ixe:D (2.3) BS01 COA 2.3.3.16 GO:0004108 ... Q5SIM6 27493854
    54 1jkj:A (2.35) BS01 COA 6.2.1.5 GO:0000166 ... P0AGE9 11781092
    55 1jkj:B (2.35) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 11781092
    56 1jkj:B (2.35) BS02 COA 6.2.1.5 GO:0000287 ... P0A836 11781092
    57 1jkj:D (2.35) BS01 COA 6.2.1.5 GO:0000166 ... P0AGE9 11781092
    58 1jkj:E (2.35) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 11781092
    59 1jkj:E (2.35) BS02 COA 6.2.1.5 GO:0000287 ... P0A836 11781092
    60 1jll:A (2.69) BS01 COA 6.2.1.5 GO:0000166 ... P0AGE9 11781092
    61 1jll:B (2.69) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 11781092
    62 1jll:B (2.69) BS02 COA 6.2.1.5 GO:0000287 ... P0A836 11781092
    63 1jll:D (2.69) BS01 COA 6.2.1.5 GO:0000166 ... P0AGE9 11781092
    64 1jll:E (2.69) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 11781092
    65 1jll:E (2.69) BS02 COA 6.2.1.5 GO:0000287 ... P0A836 11781092
    66 1jtb:A (-1.00) BS01 COA ? GO:0006869 ... P07597 9032083
    67 1khr:A (2.8) BS03 COA 2.3.1.- GO:0016740 ... P50870 11841212
    68 1khr:A (2.8) BS04 COA 2.3.1.- GO:0016740 ... P50870 11841212
    69 1khr:B (2.8) BS02 COA 2.3.1.- GO:0016740 ... P50870 11841212
    70 1khr:B (2.8) BS03 COA 2.3.1.- GO:0016740 ... P50870 11841212
    71 1khr:C (2.8) BS01 COA 2.3.1.- GO:0016740 ... P50870 11841212
    72 1khr:C (2.8) BS02 COA 2.3.1.- GO:0016740 ... P50870 11841212
    73 1khr:D (2.8) BS01 COA 2.3.1.- GO:0016740 ... P50870 11841212
    74 1khr:D (2.8) BS02 COA 2.3.1.- GO:0016740 ... P50870 11841212
    75 1khr:E (2.8) BS01 COA 2.3.1.- GO:0016740 ... P50870 11841212
    76 1khr:E (2.8) BS03 COA 2.3.1.- GO:0016740 ... P50870 11841212
    77 1khr:F (2.8) BS01 COA 2.3.1.- GO:0016740 ... P50870 11841212
    78 1khr:F (2.8) BS02 COA 2.3.1.- GO:0016740 ... P50870 11841212
    79 1kqa:A (3.2) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    80 1kqa:A (3.2) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    81 1kqa:B (3.2) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    82 1kqa:B (3.2) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    83 1kqa:C (3.2) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    84 1kqa:C (3.2) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    85 1kru:A (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    86 1kru:A (2.8) BS06 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    87 1kru:B (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    88 1kru:B (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    89 1kru:C (2.8) BS03 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    90 1kru:C (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    91 1krv:A (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    92 1krv:A (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    93 1krv:B (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    94 1krv:B (2.8) BS03 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    95 1krv:C (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    96 1krv:C (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    97 1m4d:A (1.8) BS02 COA 2.3.1.- GO:0005886 ... P9WQG9 12161746
    98 1m4d:B (1.8) BS02 COA 2.3.1.- GO:0005886 ... P9WQG9 12161746
    99 1m4g:A (1.8) BS01 COA 2.3.1.- GO:0005886 ... P9WQG9 12161746
    100 1m4g:B (1.8) BS01 COA 2.3.1.- GO:0005886 ... P9WQG9 12161746
    101 1m4i:A (1.5) BS01 COA 2.3.1.- GO:0005886 ... P9WQG9 12161746
    102 1m4i:B (1.5) BS01 COA 2.3.1.- GO:0005886 ... P9WQG9 12161746
    103 1mj9:A (2.5) BS01 COA 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q08649 12368900
    104 1mja:A (2.26) BS01 COA 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q08649 12368900
    105 1mzj:A (2.1) BS01 COA 2.3.1.180
    2.3.1.300    		 GO:0004315 ... Q9F6D4 12429097
    106 1mzj:B (2.1) BS01 COA 2.3.1.180
    2.3.1.300    		 GO:0004315 ... Q9F6D4 12429097
    107 1n71:A (1.8) BS01 COA ? GO:0016747 ... Q47764 12592013
    108 1n71:B (1.8) BS01 COA ? GO:0016747 ... Q47764 12592013
    109 1n71:C (1.8) BS01 COA ? GO:0016747 ... Q47764 12592013
    110 1n71:D (1.8) BS01 COA ? GO:0016747 ... Q47764 12592013
    111 1n8w:A (2.7) BS02 COA 2.3.3.9 GO:0000287 ... P9WK17 12393860
    112 1ndi:A (2.3) BS01 COA 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P47934 12526798
    113 1ndi:B (2.3) BS01 COA 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P47934 12526798
    114 1nl7:A (1.903) BS01 COA 2.3.1.9 GO:0003985 ... P07097 N/A
    115 1nl7:B (1.903) BS01 COA 2.3.1.9 GO:0003985 ... P07097 N/A
    116 1nvl:A (-1.00) BS01 COA ? GO:0000062 ... P07107 N/A
    117 1p0h:A (1.6) BS01 COA 2.3.1.189 GO:0005829 ... P9WJM7 12930994
    118 1p5r:A (2.5) BS01 COA 2.8.3.16 GO:0003824 ... O06644 12839984
    119 1p5r:B (2.5) BS01 COA 2.8.3.16 GO:0003824 ... O06644 12839984
    120 1pg3:A (2.3) BS02 COA 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    121 1pg3:B (2.3) BS02 COA 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    122 1pg4:A (1.75) BS02 COA 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    123 1pg4:B (1.75) BS02 COA 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    124 1pu9:A (2.3) BS02 COA 2.3.1.48 GO:0004402 ... Q27198 14536085
    125 1pua:A (2.3) BS02 COA 2.3.1.48 GO:0004402 ... Q27198 14536085
    126 1q2c:A (2.25) BS02 COA 2.3.1.48 GO:0004402 ... Q27198 14536085
    127 1q2d:A (2.25) BS02 COA 2.3.1.48 GO:0004402 ... Q27198 14661947
    128 1q4s:A (1.95) BS01 COA 3.1.2.23 GO:0005829 ... Q04416 12907670
    129 1q4s:A (1.95) BS02 COA 3.1.2.23 GO:0005829 ... Q04416 12907670
    130 1q4s:B (1.95) BS01 COA 3.1.2.23 GO:0005829 ... Q04416 12907670
    131 1q4s:B (1.95) BS02 COA 3.1.2.23 GO:0005829 ... Q04416 12907670
    132 1q6y:A (1.99) BS01 COA 2.8.3.16 GO:0003824 ... P69902 14993676
    133 1qfl:A (1.92) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10545327
    134 1qfl:B (1.92) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10545327
    135 1qfl:C (1.92) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10545327
    136 1qfl:D (1.92) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10545327
    137 1qr0:A (1.9) BS02 COA 2.7.8.7 GO:0000287 ... P39135 10581256
    138 1qsn:A (2.2) BS02 COA 2.3.1.48 GO:0004402 ... Q27198 10485713
    139 1r31:A (2.1) BS01 COA 1.1.1.88 GO:0004420 ... P13702 N/A
    140 1r31:B (2.1) BS01 COA 1.1.1.88 GO:0004420 ... P13702 N/A
    141 1rjn:B (2.3) BS01 COA 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    142 1s3z:A (2.0) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    143 1s3z:B (2.0) BS02 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    144 1s5k:A (2.4) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    145 1s5k:B (2.4) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    146 1s60:A (3.0) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    147 1s7l:A (2.3) BS01 COA 2.3.1.- GO:0005737 ... Q8ZPC0 15817456
    148 1s7n:A (2.1) BS01 COA 2.3.1.- GO:0005737 ... Q8ZPC0 15817456
    149 1s7n:B (2.1) BS01 COA 2.3.1.- GO:0005737 ... Q8ZPC0 15817456
    150 1s7n:C (2.1) BS01 COA 2.3.1.- GO:0005737 ... Q8ZPC0 15817456
    151 1s7n:D (2.1) BS01 COA 2.3.1.- GO:0005737 ... Q8ZPC0 15817456
    152 1scu:A (2.5) BS01 COA 6.2.1.5 GO:0000166 ... P0AGE9 8144675
    153 1scu:B (2.5) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 8144675
    154 1scu:D (2.5) BS01 COA 6.2.1.5 GO:0000166 ... P0AGE9 8144675
    155 1scu:E (2.5) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 8144675
    156 1sst:A (2.0) BS01 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    157 1sst:A (2.0) BS02 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    158 1sst:B (2.0) BS01 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    159 1sst:B (2.0) BS02 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    160 1sst:C (2.0) BS01 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    161 1sst:C (2.0) BS02 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    162 1t4c:A (2.61) BS01 COA 2.8.3.16 GO:0003824 ... O06644 15213226
    163 1t4c:B (2.61) BS01 COA 2.8.3.16 GO:0003824 ... O06644 15213226
    164 1t7q:A (1.8) BS01 COA 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P47934 15155726
    165 1t7q:B (1.8) BS01 COA 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P47934 15155726
    166 1tiq:A (1.9) BS01 COA 2.3.1.57 GO:0004145 ... P21340 16210326
    167 1tiq:A (1.9) BS02 COA 2.3.1.57 GO:0004145 ... P21340 16210326
    168 1tiq:B (1.9) BS01 COA 2.3.1.57 GO:0004145 ... P21340 16210326
    169 1vgr:A (2.1) BS01 COA 2.8.3.16 GO:0003824 ... O06644 15213226
    170 1vgr:B (2.1) BS01 COA 2.8.3.16 GO:0003824 ... O06644 15213226
    171 1vpm:A (1.66) BS01 COA 3.1.2.- GO:0005829 ... Q9KEQ1 N/A
    172 1vpm:B (1.66) BS01 COA 3.1.2.- GO:0005829 ... Q9KEQ1 N/A
    173 1vpm:C (1.66) BS01 COA 3.1.2.- GO:0005829 ... Q9KEQ1 N/A
    174 1wl4:A (1.55) BS01 COA 2.3.1.9 GO:0003985 ... Q9BWD1 15733928
    175 1wlv:A (1.9) BS01 COA ? GO:0016289 ... Q5SJP3 16061252
    176 1wlv:B (1.9) BS01 COA ? GO:0016289 ... Q5SJP3 16061252
    177 1wlv:C (1.9) BS01 COA ? GO:0016289 ... Q5SJP3 16061252
    178 1wlv:C (1.9) BS02 COA ? GO:0016289 ... Q5SJP3 16061252
    179 1wlv:D (1.9) BS01 COA ? GO:0016289 ... Q5SJP3 16061252
    180 1wlv:D (1.9) BS02 COA ? GO:0016289 ... Q5SJP3 16061252
    181 1wlv:E (1.9) BS02 COA ? GO:0016289 ... Q5SJP3 16061252
    182 1wlv:F (1.9) BS01 COA ? GO:0016289 ... Q5SJP3 16061252
    183 1wlv:G (1.9) BS01 COA ? GO:0016289 ... Q5SJP3 16061252
    184 1wlv:G (1.9) BS02 COA ? GO:0016289 ... Q5SJP3 16061252
    185 1wlv:H (1.9) BS01 COA ? GO:0016289 ... Q5SJP3 16061252
    186 1wlv:H (1.9) BS02 COA ? GO:0016289 ... Q5SJP3 16061252
    187 1wtf:A (1.6) BS01 COA ? GO:0005506 ... P10245 16156653
    188 1xa4:B (1.9) BS01 COA 2.8.3.21 GO:0003824 ... P31572 15518548
    189 1xvt:A (2.3) BS01 COA 2.8.3.21 GO:0003824 ... P31572 15823031
    190 1xvu:A (2.4) BS01 COA 2.8.3.21 GO:0003824 ... P31572 15823031
    191 1y7u:A (2.8) BS02 COA 3.1.2.20 GO:0003677 ... Q81EE4 N/A
    192 1y7u:B (2.8) BS01 COA 3.1.2.20 GO:0003677 ... Q81EE4 N/A
    193 1y7u:C (2.8) BS01 COA 3.1.2.20 GO:0003677 ... Q81EE4 N/A
    194 1y81:A (1.701) BS01 COA ? N/A Q8U2V3 N/A
    195 1yli:A (1.95) BS01 COA 3.1.2.- GO:0005737 ... P44886 N/A
    196 1yli:A (1.95) BS02 COA 3.1.2.- GO:0005737 ... P44886 N/A
    197 1yli:B (1.95) BS01 COA 3.1.2.- GO:0005737 ... P44886 N/A
    198 1yli:B (1.95) BS02 COA 3.1.2.- GO:0005737 ... P44886 N/A
    199 1yqz:A (1.54) BS03 COA 1.8.1.14 GO:0003756 ... O52582 16981688
    200 1yqz:A (1.54) BS05 COA 1.8.1.14 GO:0003756 ... O52582 16981688
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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