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BioLiP
Download all results in tab-seperated text for 2133 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 4pnc:A (1.54) BS03 CO 3.4.11.18 GO:0004177 ... C3TPN7 25293447
    1202 4q0p:A (1.93) BS01 CO 5.3.1.- GO:0016853 ... Q93UQ5 24846739
    1203 4q0q:A (1.93) BS01 CO 5.3.1.- GO:0016853 ... Q93UQ5 24846739
    1204 4q0s:A (1.93) BS01 CO 5.3.1.- GO:0016853 ... Q93UQ5 24846739
    1205 4q0u:A (1.98) BS01 CO 5.3.1.- GO:0016853 ... Q93UQ5 24846739
    1206 4q0v:A (1.98) BS01 CO 5.3.1.- GO:0016853 ... Q93UQ5 24846739
    1207 4q3w:A (1.4) BS01 CO 1.14.16.1 GO:0004497 ... P30967 25295853
    1208 4q3x:A (1.35) BS01 CO 1.14.16.1 GO:0004497 ... P30967 25295853
    1209 4q3y:A (1.4) BS01 CO 1.14.16.1 GO:0004497 ... P30967 25295853
    1210 4q3z:A (1.35) BS01 CO 1.14.16.1 GO:0004497 ... P30967 25295853
    1211 4qlz:A (2.326) BS01 CO 3.6.1.1 GO:0000287 ... Q5DE13 N/A
    1212 4qlz:A (2.326) BS02 CO 3.6.1.1 GO:0000287 ... Q5DE13 N/A
    1213 4qlz:A (2.326) BS03 CO 3.6.1.1 GO:0000287 ... Q5DE13 N/A
    1214 4qlz:B (2.326) BS01 CO 3.6.1.1 GO:0000287 ... Q5DE13 N/A
    1215 4qlz:B (2.326) BS02 CO 3.6.1.1 GO:0000287 ... Q5DE13 N/A
    1216 4rdy:A (2.0) BS01 CO ? GO:0008270 ... F0QXN6 25670483
    1217 4rdy:A (2.0) BS02 CO ? GO:0008270 ... F0QXN6 25670483
    1218 4rdy:B (2.0) BS01 CO ? GO:0008270 ... F0QXN6 25670483
    1219 4rdy:B (2.0) BS02 CO ? GO:0008270 ... F0QXN6 25670483
    1220 4rdz:A (1.8) BS01 CO ? GO:0008270 ... F0QXN6 25670483
    1221 4rdz:A (1.8) BS02 CO ? GO:0008270 ... F0QXN6 25670483
    1222 4rdz:B (1.8) BS01 CO ? GO:0008270 ... F0QXN6 25670483
    1223 4rdz:B (1.8) BS02 CO ? GO:0008270 ... F0QXN6 25670483
    1224 4re0:A (2.35) BS01 CO ? GO:0008270 ... F0QXN6 25670483
    1225 4re0:A (2.35) BS02 CO ? GO:0008270 ... F0QXN6 25670483
    1226 4s2o:A (1.7) BS02 CO 3.5.2.6 GO:0008658 ... P14489 27622530
    1227 4s2o:B (1.7) BS01 CO 3.5.2.6 GO:0008658 ... P14489 27622530
    1228 4tz9:A (2.1269) BS02 CO 3.5.2.6 N/A I3VKD5 N/A
    1229 4tzb:A (2.029) BS02 CO 3.5.2.6 N/A G9JVE6 N/A
    1230 4u1b:A (1.89) BS01 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1231 4u1b:A (1.89) BS02 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1232 4u69:A (1.6) BS01 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1233 4u69:A (1.6) BS02 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1234 4u6c:A (1.91) BS01 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1235 4u6c:A (1.91) BS02 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1236 4u6e:A (1.9) BS01 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1237 4u6e:A (1.9) BS02 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1238 4u6j:A (1.56) BS01 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1239 4u6j:A (1.56) BS02 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1240 4u6w:A (1.83) BS01 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1241 4u6w:A (1.83) BS02 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1242 4u6z:A (1.8) BS01 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1243 4u6z:A (1.8) BS02 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1244 4u70:A (1.6) BS01 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1245 4u70:A (1.6) BS02 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1246 4u71:A (1.8) BS01 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1247 4u71:A (1.8) BS02 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1248 4u73:A (1.8) BS01 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1249 4u73:A (1.8) BS02 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1250 4u75:A (1.94) BS01 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1251 4u75:A (1.94) BS02 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1252 4u76:A (1.87) BS01 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1253 4u76:A (1.87) BS02 CO 3.4.11.18 GO:0006508 ... P53582 25699713
    1254 4uob:A (1.31) BS02 CO 4.2.99.18 GO:0003824 ... Q9RVU4 26172070
    1255 4uwt:A (1.2) BS03 CO 3.2.1.91 GO:0004553 ... P62694 35997626
    1256 4uwt:A (1.2) BS04 CO 3.2.1.91 GO:0004553 ... P62694 35997626
    1257 4v0z:A (1.7) BS03 CO 3.2.1.91 GO:0004553 ... P62694 35997626
    1258 4v0z:A (1.7) BS04 CO 3.2.1.91 GO:0004553 ... P62694 35997626
    1259 4wgx:A (2.29) BS01 CO ? GO:0016787 ... G2XLB0 25636851
    1260 4wvx:A (1.9) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    1261 4wvx:A (1.9) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    1262 4wvx:B (1.9) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    1263 4wvx:B (1.9) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    1264 4wwd:A (1.3) BS01 CO ? GO:0042597 ... P37975 25628016
    1265 4wzx:A (1.3859) BS02 CO 2.7.11.1 N/A Q6PHR2 26011858
    1266 4x8i:A (2.5) BS02 CO 3.4.11.15 GO:0004177 ... Q8TZW4 26853450
    1267 4x8i:B (2.5) BS02 CO 3.4.11.15 GO:0004177 ... Q8TZW4 26853450
    1268 4x8i:C (2.5) BS02 CO 3.4.11.15 GO:0004177 ... Q8TZW4 26853450
    1269 4xim:A (2.3) BS01 CO 5.3.1.5 GO:0000287 ... P12851 1610791
    1270 4xim:A (2.3) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1610791
    1271 4xim:B (2.3) BS01 CO 5.3.1.5 GO:0000287 ... P12851 1610791
    1272 4xim:B (2.3) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1610791
    1273 4xim:C (2.3) BS01 CO 5.3.1.5 GO:0000287 ... P12851 1610791
    1274 4xim:C (2.3) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1610791
    1275 4xim:D (2.3) BS01 CO 5.3.1.5 GO:0000287 ... P12851 1610791
    1276 4xim:D (2.3) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1610791
    1277 4xyj:F (3.1) BS06 CO 2.7.1.11 GO:0003872 ... Q01813 25985179
    1278 4y5s:B (2.543) BS03 CO 1.14.11.38 GO:0005575 ... Q4WAW9 26524521
    1279 4y5t:B (1.949) BS02 CO 1.14.11.38 GO:0005575 ... Q4WAW9 26524521
    1280 4yiv:A (1.93) BS01 CO ? GO:0016020 ... S8GKS3 25955165
    1281 4yiv:A (1.93) BS02 CO ? GO:0016020 ... S8GKS3 25955165
    1282 4zhn:A (1.333) BS02 CO 1.14.11.33 GO:0005515 ... P05050 N/A
    1283 4zst:A (2.011) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 26274608
    1284 4zst:A (2.011) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 26274608
    1285 4zst:B (2.011) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 26274608
    1286 4zst:B (2.011) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 26274608
    1287 4zsu:A (2.011) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 26274608
    1288 4zsu:A (2.011) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 26274608
    1289 4zsu:B (2.011) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 26274608
    1290 4zsu:B (2.011) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 26274608
    1291 5aeb:A (2.1) BS03 CO 3.5.2.6 GO:0046872 ... B5L5V5 28750094
    1292 5aeb:B (2.1) BS01 CO 3.5.2.6 GO:0046872 ... B5L5V5 28750094
    1293 5b7y:A (1.32) BS01 CO 5.1.3.-
    5.3.1.-    		 GO:0006020 ... Q9WYP7 28258150
    1294 5b7y:B (1.32) BS01 CO 5.1.3.-
    5.3.1.-    		 GO:0006020 ... Q9WYP7 28258150
    1295 5c6c:A (2.05) BS02 CO 2.7.11.12 N/A Q13237 26769964
    1296 5c6x:A (1.5) BS01 CO ? N/A D1A230 N/A
    1297 5cel:A (1.9) BS09 CO 3.2.1.91 GO:0004553 ... P62694 9466911
    1298 5cel:A (1.9) BS10 CO 3.2.1.91 GO:0004553 ... P62694 9466911
    1299 5ch9:A (1.9) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    1300 5ch9:A (1.9) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    1301 5ch9:B (1.9) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    1302 5ch9:B (1.9) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    1303 5cls:A (1.75) BS01 CO 3.4.11.18 GO:0006508 ... P50579 26686773
    1304 5d6e:A (1.49) BS02 CO 3.4.11.18 GO:0006508 ... P50579 26686773
    1305 5d6e:A (1.49) BS03 CO 3.4.11.18 GO:0006508 ... P50579 26686773
    1306 5d6f:A (1.55) BS02 CO 3.4.11.18 GO:0006508 ... P50579 26686773
    1307 5ds0:A (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    1308 5ds0:A (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    1309 5ds0:B (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    1310 5ds0:B (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    1311 5ds0:C (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    1312 5ds0:C (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    1313 5ds0:D (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    1314 5ds0:D (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    1315 5ds0:E (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    1316 5ds0:E (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    1317 5ds0:F (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    1318 5ds0:F (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    1319 5ds0:G (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    1320 5ds0:G (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    1321 5ds0:H (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    1322 5ds0:H (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    1323 5ds0:I (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    1324 5ds0:I (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    1325 5ds0:J (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    1326 5ds0:J (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    1327 5ds0:K (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    1328 5ds0:K (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    1329 5ds0:L (2.8) BS01 CO ? GO:0004177 ... M7T295 N/A
    1330 5ds0:L (2.8) BS02 CO ? GO:0004177 ... M7T295 N/A
    1331 5e3x:A (2.197) BS01 CO 3.4.17.19 GO:0004180 ... A0A140UHP3 26603937
    1332 5e8g:A (2.7) BS01 CO ? GO:0003700 ... Q01543 26618620
    1333 5e8g:B (2.7) BS01 CO ? GO:0003700 ... Q01543 26618620
    1334 5e8g:C (2.7) BS01 CO ? GO:0003700 ... Q01543 26618620
    1335 5e8g:D (2.7) BS01 CO ? GO:0003700 ... Q01543 26618620
    1336 5ec3:A (2.1) BS01 CO 1.13.11.27 GO:0000139 ... P32754 N/A
    1337 5ero:A (2.55) BS01 CO 2.5.1.29
    4.2.3.43    		 GO:0004659 ... A2PZA5 26734760
    1338 5ero:A (2.55) BS02 CO 2.5.1.29
    4.2.3.43    		 GO:0004659 ... A2PZA5 26734760
    1339 5ero:B (2.55) BS01 CO 2.5.1.29
    4.2.3.43    		 GO:0004659 ... A2PZA5 26734760
    1340 5ero:B (2.55) BS02 CO 2.5.1.29
    4.2.3.43    		 GO:0004659 ... A2PZA5 26734760
    1341 5ero:C (2.55) BS01 CO 2.5.1.29
    4.2.3.43    		 GO:0004659 ... A2PZA5 26734760
    1342 5ero:C (2.55) BS02 CO 2.5.1.29
    4.2.3.43    		 GO:0004659 ... A2PZA5 26734760
    1343 5ero:C (2.55) BS03 CO 2.5.1.29
    4.2.3.43    		 GO:0004659 ... A2PZA5 26734760
    1344 5esr:A (1.476) BS01 CO 3.8.1.5 GO:0003824 ... Q9A919 26833751
    1345 5esr:A (1.476) BS02 CO 3.8.1.5 GO:0003824 ... Q9A919 26833751
    1346 5esr:A (1.476) BS04 CO 3.8.1.5 GO:0003824 ... Q9A919 26833751
    1347 5faq:B (1.96) BS01 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    1348 5faq:B (1.96) BS02 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    1349 5fas:A (1.74) BS02 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    1350 5fas:A (1.74) BS03 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    1351 5fas:B (1.74) BS01 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    1352 5fat:A (2.09) BS02 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    1353 5fat:B (2.09) BS01 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    1354 5fat:B (2.09) BS03 CO 3.5.2.6 GO:0008658 ... Q6XEC0 26731698
    1355 5fp3:A (2.05) BS03 CO 1.14.11.68 N/A O15054 26771107
    1356 5fp3:B (2.05) BS03 CO 1.14.11.68 N/A O15054 26771107
    1357 5fp8:A (1.98) BS02 CO 1.14.11.66 N/A Q6B0I6 26771107
    1358 5fp9:A (2.0) BS02 CO 1.14.11.66 N/A Q6B0I6 26771107
    1359 5fpa:A (1.96) BS02 CO 1.14.11.66 N/A Q6B0I6 26771107
    1360 5fpb:A (1.91) BS02 CO 1.14.11.66 N/A Q6B0I6 26771107
    1361 5hi0:A (2.602) BS01 CO 4.1.1.2 GO:0005737 ... O34714 27014926
    1362 5hi0:A (2.602) BS02 CO 4.1.1.2 GO:0005737 ... O34714 27014926
    1363 5hzs:A (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    1364 5hzs:B (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    1365 5hzs:C (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    1366 5hzs:D (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    1367 5hzs:E (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    1368 5hzs:F (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    1369 5hzs:G (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    1370 5hzs:H (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    1371 5hzs:I (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    1372 5hzs:J (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    1373 5hzs:K (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    1374 5hzs:L (2.17) BS01 CO ? GO:0006091 ... Q5TLG6 27433793
    1375 5i1y:B (1.95) BS01 CO N/A N/A N/A N/A
    1376 5i8y:A (1.942) BS01 CO 1.13.11.53
    1.13.11.54    		 GO:0005506 ... Q99JT9 26858196
    1377 5iav:A (1.7) BS01 CO ? GO:0003674 ... A0A4Y1WAP5 27129244
    1378 5iav:B (1.7) BS01 CO ? GO:0003674 ... A0A4Y1WAP5 27129244
    1379 5iax:A (2.1) BS01 CO ? GO:0003674 ... A0A4Y1WAP5 27129244
    1380 5iax:B (2.1) BS01 CO ? GO:0003674 ... A0A4Y1WAP5 27129244
    1381 5img:C (1.844) BS01 CO N/A GO:0006508 ... N/A N/A
    1382 5img:E (1.844) BS01 CO N/A GO:0006508 ... N/A N/A
    1383 5img:G (1.844) BS01 CO N/A GO:0006508 ... N/A N/A
    1384 5img:H (1.844) BS01 CO N/A GO:0006508 ... N/A N/A
    1385 5imh:B (2.471) BS01 CO N/A GO:0006508 ... N/A N/A
    1386 5imh:C (2.471) BS01 CO N/A GO:0006508 ... N/A N/A
    1387 5iqn:A (1.0) BS02 CO ? GO:0005515 ... P08190 27351462
    1388 5iqn:G (1.0) BS02 CO ? GO:0005515 ... P08190 27351462
    1389 5iqo:A (1.302) BS03 CO ? GO:0005515 ... P08190 27351462
    1390 5kzk:A (2.28) BS01 CO 2.1.1.- GO:0003723 ... Q92SJ4 N/A
    1391 5kzk:B (2.28) BS01 CO 2.1.1.- GO:0003723 ... Q92SJ4 N/A
    1392 5l0z:A (2.9) BS01 CO 2.1.1.- GO:0003723 ... Q92SJ4 N/A
    1393 5l0z:B (2.9) BS01 CO 2.1.1.- GO:0003723 ... Q92SJ4 N/A
    1394 5m1o:A (1.6) BS01 CO 3.1.21.-
    3.6.4.-    		 N/A A0A1L4BKS3 28100693
    1395 5m1o:B (1.6) BS01 CO 3.1.21.-
    3.6.4.-    		 N/A A0A1L4BKS3 28100693
    1396 5nci:A (1.755) BS01 CO ? GO:0016491 ... A0A0E3URV8 29163906
    1397 5nci:B (1.755) BS01 CO ? GO:0016491 ... A0A0E3URV8 29163906
    1398 5nfl:A (1.903) BS01 CO ? GO:0046872 ... A0A452CS62 32970113
    1399 5nhc:A (1.93) BS01 CO 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    1400 5nhc:A (1.93) BS02 CO 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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