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BioLiP
Download all results in tab-seperated text for 2133 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 3zgj:B (1.95) BS01 CO 1.13.11.46 GO:0003868 ... Q9Z4X7 23881738
    1002 3zr9:A (1.91) BS02 CO 3.5.2.6 GO:0008270 ... C7C422 22102018
    1003 4a8i:A (0.95) BS01 CO 5.3.1.5 GO:0000287 ... P24300 N/A
    1004 4a8i:A (0.95) BS02 CO 5.3.1.5 GO:0000287 ... P24300 N/A
    1005 4a8l:A (1.35) BS01 CO 5.3.1.5 GO:0000287 ... P24300 N/A
    1006 4a8l:A (1.35) BS02 CO 5.3.1.5 GO:0000287 ... P24300 N/A
    1007 4a8n:A (1.2) BS01 CO 5.3.1.5 GO:0000287 ... P24300 N/A
    1008 4a8n:A (1.2) BS02 CO 5.3.1.5 GO:0000287 ... P24300 N/A
    1009 4a8r:A (1.42) BS01 CO 5.3.1.5 GO:0000287 ... P24300 N/A
    1010 4a8r:A (1.42) BS02 CO 5.3.1.5 GO:0000287 ... P24300 N/A
    1011 4al3:A (1.98) BS01 CO 3.5.1.88 GO:0005515 ... P0A6K3 23072298
    1012 4aq4:A (1.8) BS04 CO ? GO:0001407 ... P0AG80 23013274
    1013 4ask:A (1.86) BS03 CO 1.14.11.68 N/A O15054 22842901
    1014 4ask:B (1.86) BS03 CO 1.14.11.68 N/A O15054 22842901
    1015 4az4:A (1.8) BS01 CO 3.5.1.88 GO:0005515 ... P0A6K3 23072298
    1016 4b5s:A (1.68) BS01 CO 4.1.2.52 GO:0003824 ... B1IS70 22908224
    1017 4b5s:B (1.68) BS01 CO 4.1.2.52 GO:0003824 ... B1IS70 22908224
    1018 4b5t:A (1.923) BS01 CO 4.1.2.52 GO:0003824 ... B1IS70 22908224
    1019 4b5t:B (1.923) BS01 CO 4.1.2.52 GO:0003824 ... B1IS70 22908224
    1020 4b5u:A (1.913) BS01 CO 4.1.2.52 GO:0003824 ... B1IS70 22908224
    1021 4b5u:B (1.913) BS01 CO 4.1.2.52 GO:0003824 ... B1IS70 22908224
    1022 4b5w:A (1.792) BS01 CO 4.1.2.52 GO:0003824 ... B1IS70 22908224
    1023 4b5w:B (1.792) BS01 CO 4.1.2.52 GO:0003824 ... B1IS70 22908224
    1024 4b5w:C (1.792) BS01 CO 4.1.2.52 GO:0003824 ... B1IS70 22908224
    1025 4b5w:D (1.792) BS01 CO 4.1.2.52 GO:0003824 ... B1IS70 22908224
    1026 4b5w:E (1.792) BS01 CO 4.1.2.52 GO:0003824 ... B1IS70 22908224
    1027 4b5w:F (1.792) BS01 CO 4.1.2.52 GO:0003824 ... B1IS70 22908224
    1028 4b7b:A (2.5) BS02 CO ? GO:0003777 ... P52732 23875972
    1029 4b7b:A (2.5) BS03 CO ? GO:0003777 ... P52732 23875972
    1030 4b7b:A (2.5) BS04 CO ? GO:0003777 ... P52732 23875972
    1031 4bqt:B (2.88) BS02 CO ? GO:0004888 ... Q8WSF8 22553201
    1032 4c4c:A (1.45) BS10 CO 3.2.1.91 GO:0004553 ... P62694 24341799
    1033 4c4c:A (1.45) BS11 CO 3.2.1.91 GO:0004553 ... P62694 24341799
    1034 4c4d:A (1.32) BS09 CO 3.2.1.91 GO:0004553 ... P62694 24341799
    1035 4c4d:A (1.32) BS10 CO 3.2.1.91 GO:0004553 ... P62694 24341799
    1036 4c8q:C (3.698) BS01 CO ? GO:0000290 ... P57743 24139796
    1037 4cl7:A (2.0) BS01 CO 2.7.10.1 N/A P17948 27942001
    1038 4cl7:B (2.0) BS01 CO 2.7.10.1 N/A P17948 27942001
    1039 4cl7:C (2.0) BS01 CO 2.7.10.1 N/A P17948 27942001
    1040 4cl7:D (2.0) BS01 CO 2.7.10.1 N/A P17948 27942001
    1041 4cla:A (2.0) BS01 CO 2.3.1.28 GO:0008811 ... P00484 2015231
    1042 4cv4:A (1.902) BS01 CO ? N/A Q9CQJ2 24794838
    1043 4cv7:A (1.4) BS01 CO ? N/A B4F366 25005079
    1044 4d07:A (1.85) BS02 CO ? GO:0005515 ... Q96FJ2 25312846
    1045 4d5i:A (1.42) BS04 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    1046 4d5i:A (1.42) BS05 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    1047 4d5j:A (1.5) BS04 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    1048 4d5j:A (1.5) BS05 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    1049 4d5o:A (1.52) BS04 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    1050 4d5o:A (1.52) BS05 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    1051 4d5p:A (1.89) BS03 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    1052 4d5p:A (1.89) BS04 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    1053 4d5q:A (1.68) BS05 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    1054 4d5q:A (1.68) BS06 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    1055 4d5v:A (1.62) BS06 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    1056 4e9a:A (1.662) BS01 CO 3.5.1.88 GO:0006412 ... Q672W7 N/A
    1057 4e9b:A (1.7) BS01 CO 3.5.1.88 GO:0006412 ... Q672W7 N/A
    1058 4ekd:A (2.71) BS03 CO 3.6.5.1 GO:0001501 ... P21279 23434405
    1059 4ekd:A (2.71) BS04 CO 3.6.5.1 GO:0001501 ... P21279 23434405
    1060 4era:A (2.398) BS01 CO ? GO:0005737 ... Q83V25 22746257
    1061 4era:B (2.398) BS01 CO ? GO:0005737 ... Q83V25 22746257
    1062 4ero:A (2.65) BS01 CO 1.13.11.24 GO:0003712 ... O00625 23716661
    1063 4esm:A (1.35) BS01 CO 1.14.16.1 GO:0004497 ... P30967 23860686
    1064 4etl:A (1.49) BS01 CO 1.14.16.1 GO:0004497 ... P30967 23860686
    1065 4fck:A (1.9) BS02 CO 3.5.3.1 GO:0000050 ... P05089 22869115
    1066 4fck:A (1.9) BS03 CO 3.5.3.1 GO:0000050 ... P05089 22869115
    1067 4fck:B (1.9) BS02 CO 3.5.3.1 GO:0000050 ... P05089 22869115
    1068 4fck:B (1.9) BS03 CO 3.5.3.1 GO:0000050 ... P05089 22869115
    1069 4ft8:A (1.966) BS03 CO ? GO:0003677 ... P0ACJ8 24817710
    1070 4ft8:B (1.966) BS05 CO ? GO:0003677 ... P0ACJ8 24817710
    1071 4g2d:A (2.7) BS01 CO 3.1.8.1 GO:0004063 ... C4KKZ9 23071703
    1072 4g3p:A (2.47) BS02 CO N/A GO:0000287 ... N/A N/A
    1073 4g3q:A (1.9) BS02 CO 2.3.1.157
    2.7.7.23    		 GO:0000287 ... P9WMN3 N/A
    1074 4g3s:A (2.04) BS04 CO 2.3.1.157
    2.7.7.23    		 GO:0000287 ... P9WMN3 N/A
    1075 4g87:A (2.03) BS01 CO 2.3.1.157
    2.7.7.23    		 GO:0000287 ... P9WMN3 23485416
    1076 4gjy:A (1.2492) BS01 CO 1.14.11.73
    3.4.-.-    		 N/A Q8N371 22851697
    1077 4gjz:A (1.0481) BS01 CO 1.14.11.73
    3.4.-.-    		 N/A Q8N371 22851697
    1078 4gpr:A (1.6) BS01 CO ? GO:0000209 ... C4M5T2 23209297
    1079 4hhl:A (1.73) BS01 CO 5.3.1.5 GO:0000287 ... Q9ZAI3 23463249
    1080 4hhl:B (1.73) BS01 CO 5.3.1.5 GO:0000287 ... Q9ZAI3 23463249
    1081 4hhm:A (2.15) BS01 CO 5.3.1.5 GO:0000287 ... Q9ZAI3 23463249
    1082 4hhm:B (2.15) BS01 CO 5.3.1.5 GO:0000287 ... Q9ZAI3 23463249
    1083 4hhm:C (2.15) BS01 CO 5.3.1.5 GO:0000287 ... Q9ZAI3 23463249
    1084 4hhm:D (2.15) BS01 CO 5.3.1.5 GO:0000287 ... Q9ZAI3 23463249
    1085 4hhm:E (2.15) BS01 CO 5.3.1.5 GO:0000287 ... Q9ZAI3 23463249
    1086 4hhm:F (2.15) BS01 CO 5.3.1.5 GO:0000287 ... Q9ZAI3 23463249
    1087 4hhm:G (2.15) BS01 CO 5.3.1.5 GO:0000287 ... Q9ZAI3 23463249
    1088 4hhm:H (2.15) BS01 CO 5.3.1.5 GO:0000287 ... Q9ZAI3 23463249
    1089 4hxx:A (2.09) BS01 CO 3.4.11.18 GO:0006508 ... P53582 23507151
    1090 4hxx:A (2.09) BS02 CO 3.4.11.18 GO:0006508 ... P53582 23507151
    1091 4i2e:A (2.0) BS02 CO 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 23856622
    1092 4i2e:A (2.0) BS04 CO 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 23856622
    1093 4i2g:A (2.5) BS02 CO 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 23856622
    1094 4iec:A (2.0) BS01 CO 3.4.11.18 GO:0004177 ... P9WK19 24841365
    1095 4iec:A (2.0) BS02 CO 3.4.11.18 GO:0004177 ... P9WK19 24841365
    1096 4if7:A (2.0) BS01 CO 3.4.11.18 GO:0004177 ... P9WK19 24841365
    1097 4if7:A (2.0) BS02 CO 3.4.11.18 GO:0004177 ... P9WK19 24841365
    1098 4ikr:A (1.78) BS01 CO 3.4.11.18 GO:0006508 ... P53582 23767698
    1099 4ikr:A (1.78) BS02 CO 3.4.11.18 GO:0006508 ... P53582 23767698
    1100 4iks:A (1.7) BS02 CO 3.4.11.18 GO:0006508 ... P53582 23767698
    1101 4iks:A (1.7) BS03 CO 3.4.11.18 GO:0006508 ... P53582 23767698
    1102 4ikt:A (1.6) BS02 CO 3.4.11.18 GO:0006508 ... P53582 23767698
    1103 4ikt:A (1.6) BS03 CO 3.4.11.18 GO:0006508 ... P53582 23767698
    1104 4iku:A (1.3) BS02 CO 3.4.11.18 GO:0006508 ... P53582 23767698
    1105 4iku:A (1.3) BS03 CO 3.4.11.18 GO:0006508 ... P53582 23767698
    1106 4iu6:A (1.9) BS01 CO 3.4.11.18 GO:0004177 ... P53582 23634668
    1107 4iu6:A (1.9) BS02 CO 3.4.11.18 GO:0004177 ... P53582 23634668
    1108 4iww:A (2.3) BS01 CO 4.1.1.48 GO:0000162 ... Q06121 23924187
    1109 4iww:B (2.3) BS01 CO 4.1.1.48 GO:0000162 ... Q06121 23924187
    1110 4j2m:A (1.786) BS01 CO ? GO:0008270 ... Q9RVU2 23837603
    1111 4j2m:A (1.786) BS02 CO ? GO:0008270 ... Q9RVU2 23837603
    1112 4j35:A (1.783) BS01 CO ? GO:0008270 ... Q9RVU2 23837603
    1113 4j35:A (1.783) BS02 CO ? GO:0008270 ... Q9RVU2 23837603
    1114 4j5n:A (2.05) BS01 CO ? GO:0008270 ... Q9RVU2 23837603
    1115 4j5n:A (2.05) BS02 CO ? GO:0008270 ... Q9RVU2 23837603
    1116 4jbh:A (2.2) BS02 CO 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    1117 4jbh:B (2.2) BS02 CO 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    1118 4jbh:C (2.2) BS02 CO 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    1119 4jbh:D (2.2) BS02 CO 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    1120 4jh5:A (1.77) BS01 CO 2.5.1.- GO:0000287 ... Q739M9 24004181
    1121 4jh5:B (1.77) BS02 CO 2.5.1.- GO:0000287 ... Q739M9 24004181
    1122 4jk9:A (1.5) BS01 CO ? GO:0000398 ... Q6P2Q9 23686287
    1123 4jk9:B (1.5) BS01 CO ? GO:0000398 ... Q6P2Q9 23686287
    1124 4jka:A (1.32) BS01 CO ? GO:0000398 ... Q6P2Q9 23686287
    1125 4jka:B (1.32) BS01 CO ? GO:0000398 ... Q6P2Q9 23686287
    1126 4jpx:A (1.55) BS02 CO 1.14.16.1 GO:0004497 ... P30967 23860686
    1127 4jz2:A (1.95) BS01 CO 1.15.1.1 GO:0004784 ... Q186I6 N/A
    1128 4ker:A (2.6) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1129 4ker:B (2.6) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1130 4ker:C (2.6) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1131 4ker:D (2.6) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1132 4kes:A (2.1) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1133 4kes:B (2.1) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1134 4kes:C (2.1) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1135 4kes:D (2.1) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1136 4ket:A (2.0) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1137 4ket:B (2.0) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1138 4ket:C (2.0) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1139 4ket:D (2.0) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1140 4keu:A (2.2) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1141 4keu:B (2.2) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1142 4keu:C (2.2) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1143 4keu:D (2.2) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1144 4kev:A (2.65) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1145 4kev:B (2.65) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1146 4kev:C (2.65) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1147 4kev:D (2.65) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1148 4kez:A (1.85) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1149 4kez:B (1.85) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1150 4kez:C (1.85) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1151 4kez:D (1.85) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1152 4kf1:A (2.0) BS01 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1153 4kf1:B (2.0) BS01 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1154 4kf1:C (2.0) BS01 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1155 4kf1:D (2.0) BS01 CO 3.1.8.1 GO:0004063 ... Q97VT7 24086491
    1156 4lit:A (2.4) BS01 CO 1.14.11.47 GO:0005515 ... P27431 24814345
    1157 4liv:A (2.7) BS01 CO 1.14.11.47 GO:0005515 ... P27431 24814345
    1158 4lk8:B (1.494) BS01 CO ? GO:0005506 ... A1SR01 25832196
    1159 4lpn:A (1.66) BS01 CO 1.16.3.1 GO:0004322 ... P07798 N/A
    1160 4lpn:A (1.66) BS02 CO 1.16.3.1 GO:0004322 ... P07798 N/A
    1161 4lpn:A (1.66) BS03 CO 1.16.3.1 GO:0004322 ... P07798 N/A
    1162 4lpn:A (1.66) BS04 CO 1.16.3.1 GO:0004322 ... P07798 N/A
    1163 4lpn:A (1.66) BS05 CO 1.16.3.1 GO:0004322 ... P07798 N/A
    1164 4lpn:A (1.66) BS06 CO 1.16.3.1 GO:0004322 ... P07798 N/A
    1165 4m5c:A (2.5) BS01 CO ? GO:0000041 ... Q8R9C0 24366337
    1166 4mag:A (1.45) BS01 CO N/A GO:0030288 ... N/A 25004958
    1167 4met:A (2.095) BS01 CO 4.1.1.2 GO:0005737 ... O34714 24444454
    1168 4met:A (2.095) BS02 CO 4.1.1.2 GO:0005737 ... O34714 24444454
    1169 4met:B (2.095) BS01 CO 4.1.1.2 GO:0005737 ... O34714 24444454
    1170 4met:B (2.095) BS02 CO 4.1.1.2 GO:0005737 ... O34714 24444454
    1171 4met:C (2.095) BS01 CO 4.1.1.2 GO:0005737 ... O34714 24444454
    1172 4met:C (2.095) BS02 CO 4.1.1.2 GO:0005737 ... O34714 24444454
    1173 4met:D (2.095) BS01 CO 4.1.1.2 GO:0005737 ... O34714 24444454
    1174 4met:D (2.095) BS02 CO 4.1.1.2 GO:0005737 ... O34714 24444454
    1175 4n7q:A (1.6) BS01 CO 4.1.99.17 GO:0009228 ... O82392 24161603
    1176 4n8m:A (1.802) BS01 CO ? N/A Q61937 24616519
    1177 4n8m:B (1.802) BS01 CO ? N/A Q61937 24616519
    1178 4n8m:C (1.802) BS01 CO ? N/A Q61937 24616519
    1179 4n8m:D (1.802) BS01 CO ? N/A Q61937 24616519
    1180 4n8m:E (1.802) BS01 CO ? N/A Q61937 24616519
    1181 4njq:A (2.702) BS01 CO 3.4.11.- GO:0004177 ... Q9HYZ3 24704201
    1182 4njq:A (2.702) BS02 CO 3.4.11.- GO:0004177 ... Q9HYZ3 24704201
    1183 4njq:B (2.702) BS01 CO 3.4.11.- GO:0004177 ... Q9HYZ3 24704201
    1184 4njq:B (2.702) BS02 CO 3.4.11.- GO:0004177 ... Q9HYZ3 24704201
    1185 4njq:C (2.702) BS01 CO 3.4.11.- GO:0004177 ... Q9HYZ3 24704201
    1186 4njq:C (2.702) BS02 CO 3.4.11.- GO:0004177 ... Q9HYZ3 24704201
    1187 4njq:D (2.702) BS01 CO 3.4.11.- GO:0004177 ... Q9HYZ3 24704201
    1188 4njq:D (2.702) BS02 CO 3.4.11.- GO:0004177 ... Q9HYZ3 24704201
    1189 4nnc:A (2.279) BS01 CO 4.1.3.- GO:0043720 ... C5AJX5 24616091
    1190 4np7:A (1.99) BS02 CO 3.1.8.1 GO:0008270 ... Q93LD7 24721933
    1191 4nui:A (1.7) BS01 CO ? GO:0005576 ... J9ULM6 24631931
    1192 4ob0:A (1.2) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 24383915
    1193 4ob1:A (1.631) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 24383915
    1194 4ob2:A (1.52) BS02 CO 4.2.1.84 GO:0003824 ... Q7SID2 24383915
    1195 4ob3:A (1.92) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 24383915
    1196 4ook:A (1.9) BS01 CO 3.4.11.18 GO:0004177 ... P9WK19 24841365
    1197 4ook:A (1.9) BS02 CO 3.4.11.18 GO:0004177 ... P9WK19 24841365
    1198 4p7w:A (1.8) BS01 CO 1.14.11.56 GO:0016706 ... Q989T9 25171735
    1199 4p7x:A (1.3) BS01 CO 1.14.11.56 GO:0016706 ... Q989T9 25171735
    1200 4pnc:A (1.54) BS02 CO 3.4.11.18 GO:0004177 ... C3TPN7 25293447
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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