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BioLiP
Download all results in tab-seperated text for 2133 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 3mf3:B (2.5) BS01 CO 4.2.1.1 GO:0004089 ... P45148 N/A
    802 3mf3:C (2.5) BS01 CO 4.2.1.1 GO:0004089 ... P45148 N/A
    803 3mf3:D (2.5) BS01 CO 4.2.1.1 GO:0004089 ... P45148 N/A
    804 3mf3:E (2.5) BS01 CO 4.2.1.1 GO:0004089 ... P45148 N/A
    805 3mf3:F (2.5) BS01 CO 4.2.1.1 GO:0004089 ... P45148 N/A
    806 3mgp:D (2.44) BS03 CO ? GO:0000786 ... P02281 20494975
    807 3mz3:A (3.2) BS01 CO 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 20545365
    808 3mz3:B (3.2) BS02 CO 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 20545365
    809 3mz7:A (1.9) BS01 CO 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 20545365
    810 3n5f:A (2.75) BS01 CO 3.5.1.87 GO:0016787 ... Q53389 22904279
    811 3n5f:B (2.75) BS01 CO 3.5.1.87 GO:0016787 ... Q53389 22904279
    812 3ngy:A (2.204) BS01 CO 3.1.13.- GO:0000175 ... P30014 21317904
    813 3ngy:B (2.204) BS01 CO 3.1.13.- GO:0000175 ... P30014 21317904
    814 3ngz:A (2.1) BS02 CO 3.1.13.- GO:0000175 ... P30014 21317904
    815 3ngz:B (2.1) BS02 CO 3.1.13.- GO:0000175 ... P30014 21317904
    816 3nvl:A (2.3) BS01 CO 5.4.2.12 GO:0003824 ... Q38AH1 22458781
    817 3nvl:A (2.3) BS02 CO 5.4.2.12 GO:0003824 ... Q38AH1 22458781
    818 3nvl:B (2.3) BS01 CO 5.4.2.12 GO:0003824 ... Q38AH1 22458781
    819 3nvl:B (2.3) BS02 CO 5.4.2.12 GO:0003824 ... Q38AH1 22458781
    820 3nyk:A (1.86) BS01 CO ? GO:0005507 ... P04377 20945335
    821 3nzh:H (2.0) BS01 CO N/A N/A N/A N/A
    822 3oce:A (2.58) BS01 CO 4.3.1.1 GO:0003824 ... Q2YLW1 N/A
    823 3oce:B (2.58) BS01 CO 4.3.1.1 GO:0003824 ... Q2YLW1 N/A
    824 3oce:C (2.58) BS01 CO 4.3.1.1 GO:0003824 ... Q2YLW1 N/A
    825 3oce:D (2.58) BS01 CO 4.3.1.1 GO:0003824 ... Q2YLW1 N/A
    826 3ojj:A (1.72) BS01 CO 1.13.11.15 GO:0046872 ... Q45135 21153851
    827 3ojj:B (1.72) BS01 CO 1.13.11.15 GO:0046872 ... Q45135 21153851
    828 3ojj:C (1.72) BS01 CO 1.13.11.15 GO:0046872 ... Q45135 21153851
    829 3ojj:D (1.72) BS01 CO 1.13.11.15 GO:0046872 ... Q45135 21153851
    830 3ojk:A (1.68) BS01 CO 1.13.11.15 GO:0046872 ... Q45135 21153851
    831 3ojk:B (1.68) BS01 CO 1.13.11.15 GO:0046872 ... Q45135 21153851
    832 3ojk:C (1.68) BS01 CO 1.13.11.15 GO:0046872 ... Q45135 21153851
    833 3ojk:D (1.68) BS01 CO 1.13.11.15 GO:0046872 ... Q45135 21153851
    834 3ood:A (1.89) BS01 CO 3.1.8.1 GO:0008270 ... Q93LD7 20868365
    835 3ood:A (1.89) BS02 CO 3.1.8.1 GO:0008270 ... Q93LD7 20868365
    836 3oqe:A (1.9) BS01 CO 3.1.8.1 GO:0008270 ... Q93LD7 20868365
    837 3oqe:A (1.9) BS02 CO 3.1.8.1 GO:0008270 ... Q93LD7 20868365
    838 3orw:A (2.4) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    839 3orw:A (2.4) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    840 3orw:B (2.4) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    841 3orw:B (2.4) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    842 3p0f:A (1.54) BS02 CO 2.4.2.3 GO:0003824 ... O95045 21855639
    843 3p0f:A (1.54) BS03 CO 2.4.2.3 GO:0003824 ... O95045 21855639
    844 3pjl:A (1.7) BS01 CO ? GO:0005886 ... P19478 N/A
    845 3pjl:B (1.7) BS01 CO ? GO:0005886 ... P19478 N/A
    846 3pjl:B (1.7) BS02 CO ? GO:0005886 ... P19478 N/A
    847 3pjl:B (1.7) BS03 CO ? GO:0005886 ... P19478 N/A
    848 3pjl:B (1.7) BS04 CO ? GO:0005886 ... P19478 N/A
    849 3qq7:A (2.65) BS01 CO 3.6.4.6 N/A P55072 21645854
    850 3r4q:A (2.51) BS01 CO ? GO:0016829 ... Q7CXA0 N/A
    851 3r61:A (1.9002) BS01 CO ? GO:0003677 ... P54512 23298157
    852 3r61:B (1.9002) BS01 CO ? GO:0003677 ... P54512 23298157
    853 3rgt:A (1.9) BS01 CO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    854 3rgt:B (1.9) BS01 CO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    855 3rgt:C (1.9) BS01 CO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    856 3rgt:D (1.9) BS01 CO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    857 3rmu:A (1.8) BS01 CO 5.1.99.1 N/A Q96PE7 N/A
    858 3rmu:B (1.8) BS01 CO 5.1.99.1 N/A Q96PE7 N/A
    859 3rmu:C (1.8) BS01 CO 5.1.99.1 N/A Q96PE7 N/A
    860 3rmu:D (1.8) BS01 CO 5.1.99.1 N/A Q96PE7 N/A
    861 3ror:A (2.0) BS01 CO 3.4.11.18 GO:0004177 ... P9WK19 N/A
    862 3ror:A (2.0) BS02 CO 3.4.11.18 GO:0004177 ... P9WK19 N/A
    863 3s5h:A (1.603) BS01 CO 3.4.24.- GO:0004222 ... Q76NL8 N/A
    864 3s8k:A (1.7) BS01 CO ? GO:0004866 ... P80691 22027836
    865 3sch:A (2.1) BS02 CO 1.11.1.23 GO:0003677 ... Q56185 21682308
    866 3sch:B (2.1) BS02 CO 1.11.1.23 GO:0003677 ... Q56185 21682308
    867 3si8:A (2.15) BS07 CO 2.7.7.7 GO:0003684 ... Q9Y253 20577208
    868 3so7:A (2.2) BS01 CO ? GO:0008270 ... Q93LD7 22112835
    869 3so7:A (2.2) BS02 CO ? GO:0008270 ... Q93LD7 22112835
    870 3sxq:A (1.9) BS10 CO 1.7.2.2 GO:0016491 ... E7EDQ7 22935005
    871 3sxq:B (1.9) BS10 CO 1.7.2.2 GO:0016491 ... E7EDQ7 22935005
    872 3sxx:A (1.27) BS01 CO 1.4.3.21 GO:0005507 ... P12807 22691777
    873 3sxx:B (1.27) BS01 CO 1.4.3.21 GO:0005507 ... P12807 22691777
    874 3sxx:C (1.27) BS01 CO 1.4.3.21 GO:0005507 ... P12807 22691777
    875 3sxx:D (1.27) BS01 CO 1.4.3.21 GO:0005507 ... P12807 22691777
    876 3sxx:E (1.27) BS01 CO 1.4.3.21 GO:0005507 ... P12807 22691777
    877 3sxx:F (1.27) BS01 CO 1.4.3.21 GO:0005507 ... P12807 22691777
    878 3ta5:A (1.52) BS01 CO ? GO:0016874 ... B1L4V6 21965539
    879 3tcy:A (1.55) BS02 CO 1.14.16.1 GO:0004497 ... P30967 23860686
    880 3th7:A (2.1) BS01 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    881 3th7:A (2.1) BS02 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    882 3th7:B (2.1) BS01 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    883 3th7:B (2.1) BS02 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    884 3the:A (1.97) BS01 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    885 3the:A (1.97) BS02 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    886 3the:B (1.97) BS01 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    887 3the:B (1.97) BS02 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    888 3thh:A (1.85) BS01 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    889 3thh:A (1.85) BS02 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    890 3thh:B (1.85) BS02 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    891 3thh:B (1.85) BS03 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    892 3thj:A (1.5) BS01 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    893 3thj:A (1.5) BS02 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    894 3thj:B (1.5) BS01 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    895 3thj:B (1.5) BS02 CO 3.5.3.1 GO:0000050 ... P05089 21870783
    896 3tk2:A (1.35) BS02 CO 1.14.16.1 GO:0004497 ... P30967 23860686
    897 3tk4:A (1.5) BS01 CO 1.14.16.1 GO:0004497 ... P30967 23860686
    898 3tn3:A (1.6) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    899 3tn3:A (1.6) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    900 3tn3:B (1.6) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    901 3tn3:B (1.6) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    902 3tn4:A (1.5) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    903 3tn4:A (1.5) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    904 3tn4:B (1.5) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    905 3tn4:B (1.5) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    906 3tn5:A (1.75) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    907 3tn5:A (1.75) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    908 3tn5:B (1.75) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    909 3tn5:B (1.75) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    910 3tn6:A (1.6) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    911 3tn6:A (1.6) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    912 3tn6:B (1.6) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    913 3tn6:B (1.6) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    914 3tnb:A (1.6) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    915 3tnb:A (1.6) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    916 3tnb:B (1.6) BS01 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    917 3tnb:B (1.6) BS02 CO 3.5.-.- GO:0008270 ... Q5KZU5 N/A
    918 3tr3:A (2.456) BS01 CO ? GO:0005829 ... Q83DW0 26033498
    919 3tr3:B (2.456) BS01 CO ? GO:0005829 ... Q83DW0 26033498
    920 3ttb:A (2.0) BS11 CO 1.7.2.2 GO:0016491 ... E7EDQ7 22935005
    921 3ttb:B (2.0) BS12 CO 1.7.2.2 GO:0016491 ... E7EDQ7 22935005
    922 3tw3:A (2.1) BS02 CO 6.5.1.4 GO:0003824 ... P46849 22167800
    923 3uc3:A (1.9) BS01 CO 2.7.11.1 GO:0004672 ... Q39193 22160701
    924 3uf9:A (2.68) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 23139857
    925 3uf9:B (2.68) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 23139857
    926 3uf9:C (2.68) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 23139857
    927 3uf9:D (2.68) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 23139857
    928 3upm:A (1.95) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    929 3upm:A (1.95) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    930 3upm:B (1.95) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    931 3upm:B (1.95) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    932 3ur2:A (2.0) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    933 3ur2:A (2.0) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    934 3ur2:B (2.0) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    935 3ur2:B (2.0) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    936 3ur5:A (1.6) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    937 3ur5:A (1.6) BS03 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    938 3ur5:B (1.6) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    939 3ur5:B (1.6) BS03 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    940 3ur5:B (1.6) BS04 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    941 3ura:A (1.88) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    942 3ura:A (1.88) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    943 3ura:B (1.88) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    944 3ura:B (1.88) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    945 3urb:A (1.77) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    946 3urb:A (1.77) BS03 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    947 3urb:B (1.77) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    948 3urb:B (1.77) BS03 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    949 3urn:A (1.95) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    950 3urn:A (1.95) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    951 3urn:B (1.95) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    952 3urn:B (1.95) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    953 3urq:A (2.1) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    954 3urq:A (2.1) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    955 3urq:B (2.1) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    956 3urq:B (2.1) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 22809162
    957 3ut1:A (2.05) BS01 CO ? GO:0005634 ... Q96JM7 N/A
    958 3v1d:A (1.239) BS01 CO N/A N/A N/A 22092237
    959 3v1d:A (1.239) BS02 CO N/A N/A N/A 22092237
    960 3v1d:B (1.239) BS01 CO N/A N/A N/A 22092237
    961 3v1d:B (1.239) BS02 CO N/A N/A N/A 22092237
    962 3v1d:C (1.239) BS01 CO N/A N/A N/A 22092237
    963 3v1d:C (1.239) BS02 CO N/A N/A N/A 22092237
    964 3v1d:D (1.239) BS01 CO N/A N/A N/A 22092237
    965 3v1d:D (1.239) BS02 CO N/A N/A N/A 22092237
    966 3v1d:E (1.239) BS01 CO N/A N/A N/A 22092237
    967 3v1d:E (1.239) BS02 CO N/A N/A N/A 22092237
    968 3v1d:F (1.239) BS01 CO N/A N/A N/A 22092237
    969 3v1d:F (1.239) BS02 CO N/A N/A N/A 22092237
    970 3v1d:G (1.239) BS01 CO N/A N/A N/A 22092237
    971 3v1d:G (1.239) BS02 CO N/A N/A N/A 22092237
    972 3v1d:H (1.239) BS01 CO N/A N/A N/A 22092237
    973 3v1d:H (1.239) BS02 CO N/A N/A N/A 22092237
    974 3v9s:A (2.1) BS03 CO 3.1.13.- GO:0000175 ... P30014 22718982
    975 3v9u:A (2.298) BS03 CO 3.1.13.- GO:0000175 ... P30014 22718982
    976 3v9u:C (2.298) BS03 CO 3.1.13.- GO:0000175 ... P30014 22718982
    977 3v9u:D (2.298) BS03 CO 3.1.13.- GO:0000175 ... P30014 22718982
    978 3v9w:A (1.702) BS04 CO 3.1.13.- GO:0000175 ... P30014 22718982
    979 3v9w:B (1.702) BS04 CO 3.1.13.- GO:0000175 ... P30014 22718982
    980 3v9w:C (1.702) BS02 CO 3.1.13.- GO:0000175 ... P30014 22718982
    981 3v9w:D (1.702) BS02 CO 3.1.13.- GO:0000175 ... P30014 22718982
    982 3v9w:D (1.702) BS03 CO 3.1.13.- GO:0000175 ... P30014 22718982
    983 3v9z:A (1.8) BS03 CO 3.1.13.- GO:0000175 ... P30014 22718982
    984 3vxm:E (2.5) BS02 CO N/A N/A N/A 24192765
    985 3vxm:E (2.5) BS03 CO N/A N/A N/A 24192765
    986 3vyh:A (1.63) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 N/A
    987 3w45:A (1.7) BS01 CO 3.1.3.3 GO:0004721 ... P17906 26057679
    988 3w45:B (1.7) BS01 CO 3.1.3.3 GO:0004721 ... P17906 26057679
    989 3wml:A (1.99) BS02 CO 3.1.8.1 GO:0008270 ... Q93LD7 24721933
    990 3wrs:A (1.58) BS01 CO 3.1.21.-
    3.6.4.12    		 N/A P03134 25528417
    991 3wtr:A (1.96) BS01 CO ? GO:0046872 ... A0A0J9X1Z5 25274739
    992 3xim:A (2.3) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    993 3xim:A (2.3) BS03 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    994 3xim:B (2.3) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    995 3xim:B (2.3) BS03 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    996 3xim:C (2.3) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    997 3xim:C (2.3) BS03 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    998 3xim:D (2.3) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    999 3xim:D (2.3) BS03 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    1000 3zgj:A (1.95) BS01 CO 1.13.11.46 GO:0003868 ... Q9Z4X7 23881738
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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