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BioLiP
Download all results in tab-seperated text for 2133 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 2xts:C (1.33) BS02 CO 1.8.2.1 GO:0006790 ... P72178 21147779
    602 2xvy:A (1.7) BS02 CO 4.99.1.3
    4.99.1.4    		 GO:0016829 ... Q72EC8 27486032
    603 2xvz:A (2.4) BS02 CO 4.99.1.3
    4.99.1.4    		 GO:0016829 ... Q72EC8 21173279
    604 2y3b:A (1.554) BS01 CO ? GO:0042597 ... P37975 21414325
    605 2y8u:A (1.99) BS01 CO 3.5.1.41 GO:0000272 ... Q5AQQ0 28496100
    606 2y8u:B (1.99) BS01 CO 3.5.1.41 GO:0000272 ... Q5AQQ0 28496100
    607 2ywr:A (1.77) BS01 CO 2.1.2.2 GO:0004644 ... O67023 24108189
    608 2ywr:A (1.77) BS02 CO 2.1.2.2 GO:0004644 ... O67023 24108189
    609 2ywr:A (1.77) BS03 CO 2.1.2.2 GO:0004644 ... O67023 24108189
    610 2yye:A (2.1) BS01 CO 2.7.9.3 GO:0000287 ... O67139 18773910
    611 2yye:A (2.1) BS02 CO 2.7.9.3 GO:0000287 ... O67139 18773910
    612 2yye:A (2.1) BS03 CO 2.7.9.3 GO:0000287 ... O67139 18773910
    613 2yye:A (2.1) BS04 CO 2.7.9.3 GO:0000287 ... O67139 18773910
    614 2yye:B (2.1) BS02 CO 2.7.9.3 GO:0000287 ... O67139 18773910
    615 2yye:B (2.1) BS03 CO 2.7.9.3 GO:0000287 ... O67139 18773910
    616 2yye:B (2.1) BS04 CO 2.7.9.3 GO:0000287 ... O67139 18773910
    617 2yye:B (2.1) BS05 CO 2.7.9.3 GO:0000287 ... O67139 18773910
    618 2z06:A (2.2) BS01 CO ? GO:0004113 ... Q5SKL8 N/A
    619 2z06:A (2.2) BS02 CO ? GO:0004113 ... Q5SKL8 N/A
    620 2z06:B (2.2) BS01 CO ? GO:0004113 ... Q5SKL8 N/A
    621 2z06:B (2.2) BS02 CO ? GO:0004113 ... Q5SKL8 N/A
    622 2z06:B (2.2) BS03 CO ? GO:0004113 ... Q5SKL8 N/A
    623 2z06:C (2.2) BS01 CO ? GO:0004113 ... Q5SKL8 N/A
    624 2z06:C (2.2) BS02 CO ? GO:0004113 ... Q5SKL8 N/A
    625 2z06:D (2.2) BS01 CO ? GO:0004113 ... Q5SKL8 N/A
    626 2z06:D (2.2) BS02 CO ? GO:0004113 ... Q5SKL8 N/A
    627 2z06:D (2.2) BS03 CO ? GO:0004113 ... Q5SKL8 N/A
    628 2zc1:A (1.9) BS01 CO 3.1.8.1 GO:0008270 ... Q9RVU2 N/A
    629 2zc1:A (1.9) BS02 CO 3.1.8.1 GO:0008270 ... Q9RVU2 N/A
    630 2zu9:A (2.0) BS02 CO 2.4.1.217 GO:0005737 ... O58689 N/A
    631 2zu9:B (2.0) BS02 CO 2.4.1.217 GO:0005737 ... O58689 N/A
    632 3a3w:A (1.85) BS01 CO 3.1.8.1 GO:0008270 ... Q93LD7 19966226
    633 3a3w:A (1.85) BS02 CO 3.1.8.1 GO:0008270 ... Q93LD7 19966226
    634 3a3x:A (1.7) BS01 CO 3.1.8.1 GO:0008270 ... Q93LD7 19966226
    635 3a3x:A (1.7) BS02 CO 3.1.8.1 GO:0008270 ... Q93LD7 19966226
    636 3a4j:A (1.25) BS01 CO 3.1.8.1 GO:0008270 ... Q93LD7 19966226
    637 3a4j:A (1.25) BS02 CO 3.1.8.1 GO:0008270 ... Q93LD7 19966226
    638 3a9i:A (1.8) BS01 CO 2.3.3.14 GO:0003824 ... O87198 19996101
    639 3alq:R (3.0) BS01 CO ? N/A P20333 21081755
    640 3alq:S (3.0) BS01 CO ? N/A P20333 21081755
    641 3alq:T (3.0) BS01 CO ? N/A P20333 21081755
    642 3alq:U (3.0) BS01 CO ? N/A P20333 21081755
    643 3alq:V (3.0) BS01 CO ? N/A P20333 21081755
    644 3alq:W (3.0) BS01 CO ? N/A P20333 21081755
    645 3bd5:A (2.0) BS01 CO N/A N/A N/A 18338383
    646 3bd5:B (2.0) BS01 CO N/A N/A N/A 18338383
    647 3c86:A (1.8) BS02 CO 3.1.8.1 GO:0008270 ... Q93LD7 18082180
    648 3cak:A (1.83) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    649 3cak:A (1.83) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    650 3cak:B (1.83) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    651 3cak:B (1.83) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    652 3cla:A (1.75) BS01 CO 2.3.1.28 GO:0008811 ... P00484 2187098
    653 3cs2:A (1.95) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    654 3cs2:A (1.95) BS03 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    655 3cs2:B (1.95) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    656 3cs2:B (1.95) BS03 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    657 3cs2:K (1.95) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    658 3cs2:K (1.95) BS03 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    659 3cs2:P (1.95) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    660 3cs2:P (1.95) BS03 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    661 3cun:B (3.0) BS02 CO ? GO:0003676 ... P09012 18548004
    662 3d03:A (1.9) BS01 CO 3.1.4.46 GO:0004112 ... Q6XBH1 18831553
    663 3d03:A (1.9) BS02 CO 3.1.4.46 GO:0004112 ... Q6XBH1 18831553
    664 3d03:B (1.9) BS01 CO 3.1.4.46 GO:0004112 ... Q6XBH1 18831553
    665 3d03:B (1.9) BS02 CO 3.1.4.46 GO:0004112 ... Q6XBH1 18831553
    666 3d03:C (1.9) BS01 CO 3.1.4.46 GO:0004112 ... Q6XBH1 18831553
    667 3d03:C (1.9) BS02 CO 3.1.4.46 GO:0004112 ... Q6XBH1 18831553
    668 3d03:D (1.9) BS01 CO 3.1.4.46 GO:0004112 ... Q6XBH1 18831553
    669 3d03:D (1.9) BS02 CO 3.1.4.46 GO:0004112 ... Q6XBH1 18831553
    670 3d03:E (1.9) BS01 CO 3.1.4.46 GO:0004112 ... Q6XBH1 18831553
    671 3d03:E (1.9) BS02 CO 3.1.4.46 GO:0004112 ... Q6XBH1 18831553
    672 3d03:F (1.9) BS01 CO 3.1.4.46 GO:0004112 ... Q6XBH1 18831553
    673 3d03:F (1.9) BS02 CO 3.1.4.46 GO:0004112 ... Q6XBH1 18831553
    674 3dwc:A (2.1) BS01 CO 3.4.17.19 GO:0004180 ... Q6ZXC0 18793339
    675 3dwc:B (2.1) BS02 CO 3.4.17.19 GO:0004180 ... Q6ZXC0 18793339
    676 3dwc:C (2.1) BS01 CO 3.4.17.19 GO:0004180 ... Q6ZXC0 18793339
    677 3dwc:D (2.1) BS01 CO 3.4.17.19 GO:0004180 ... Q6ZXC0 18793339
    678 3e3h:A (2.15) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 18434422
    679 3e3h:A (2.15) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 18434422
    680 3e3h:B (2.15) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 18434422
    681 3e3h:B (2.15) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 18434422
    682 3f4c:A (2.07) BS01 CO ? GO:0008270 ... D0VX06 19615330
    683 3f4c:A (2.07) BS02 CO ? GO:0008270 ... D0VX06 19615330
    684 3f4c:B (2.07) BS01 CO ? GO:0008270 ... D0VX06 19615330
    685 3f4c:B (2.07) BS02 CO ? GO:0008270 ... D0VX06 19615330
    686 3f4d:A (2.36) BS01 CO ? GO:0008270 ... D0VX06 19615330
    687 3f4d:A (2.36) BS02 CO ? GO:0008270 ... D0VX06 19615330
    688 3f4d:B (2.36) BS01 CO ? GO:0008270 ... D0VX06 19615330
    689 3f4d:B (2.36) BS02 CO ? GO:0008270 ... D0VX06 19615330
    690 3g5k:A (1.7) BS02 CO 3.5.1.88 GO:0042586 ... Q9HBH1 19236878
    691 3g5k:B (1.7) BS02 CO 3.5.1.88 GO:0042586 ... Q9HBH1 19236878
    692 3g5k:C (1.7) BS02 CO 3.5.1.88 GO:0042586 ... Q9HBH1 19236878
    693 3g5k:D (1.7) BS02 CO 3.5.1.88 GO:0042586 ... Q9HBH1 19236878
    694 3g5p:A (1.7) BS01 CO 3.5.1.88 GO:0042586 ... Q9HBH1 19236878
    695 3g5p:B (1.7) BS01 CO 3.5.1.88 GO:0042586 ... Q9HBH1 19236878
    696 3g5p:C (1.7) BS01 CO 3.5.1.88 GO:0042586 ... Q9HBH1 19236878
    697 3g5p:D (1.7) BS01 CO 3.5.1.88 GO:0042586 ... Q9HBH1 19236878
    698 3gb4:A (2.05) BS02 CO 1.14.15.- GO:0004497 ... Q5S3I3 19616009
    699 3gb4:B (2.05) BS02 CO 1.14.15.- GO:0004497 ... Q5S3I3 19616009
    700 3gb4:C (2.05) BS02 CO 1.14.15.- GO:0004497 ... Q5S3I3 19616009
    701 3ggd:A (2.11) BS01 CO ? N/A Q3M3X1 N/A
    702 3gob:A (2.05) BS02 CO 1.14.15.- GO:0004497 ... Q5S3I3 19616009
    703 3gob:B (2.05) BS02 CO 1.14.15.- GO:0004497 ... Q5S3I3 19616009
    704 3gob:C (2.05) BS02 CO 1.14.15.- GO:0004497 ... Q5S3I3 19616009
    705 3gqa:A (2.1) BS01 CO ? N/A P20345 19450535
    706 3gqa:A (2.1) BS02 CO ? N/A P20345 19450535
    707 3gtf:A (1.98) BS01 CO ? GO:0008270 ... Q9RVU2 19631223
    708 3gtf:A (1.98) BS02 CO ? GO:0008270 ... Q9RVU2 19631223
    709 3gth:A (1.98) BS01 CO ? GO:0008270 ... Q9RVU2 19631223
    710 3gth:A (1.98) BS02 CO ? GO:0008270 ... Q9RVU2 19631223
    711 3gti:A (2.42) BS01 CO ? GO:0008270 ... Q9RVU2 19631223
    712 3gti:A (2.42) BS02 CO ? GO:0008270 ... Q9RVU2 19631223
    713 3gtx:A (1.62) BS01 CO ? GO:0008270 ... Q9RVU2 19631223
    714 3gtx:A (1.62) BS02 CO ? GO:0008270 ... Q9RVU2 19631223
    715 3gu1:A (2.0) BS01 CO ? GO:0008270 ... Q9RVU2 19631223
    716 3gu1:A (2.0) BS02 CO ? GO:0008270 ... Q9RVU2 19631223
    717 3gu2:A (2.0) BS01 CO ? GO:0008270 ... Q9RVU2 19631223
    718 3gu2:A (2.0) BS02 CO ? GO:0008270 ... Q9RVU2 19631223
    719 3gu9:A (2.06) BS01 CO ? GO:0008270 ... Q9RVU2 19631223
    720 3gu9:A (2.06) BS02 CO ? GO:0008270 ... Q9RVU2 19631223
    721 3h2w:A (2.66) BS06 CO 3.2.1.4 GO:0003824 ... Q9AJS0 19729024
    722 3h7j:A (1.87) BS01 CO 5.3.3.19 GO:0005506 ... P39639 19776011
    723 3h7j:A (1.87) BS02 CO 5.3.3.19 GO:0005506 ... P39639 19776011
    724 3h7j:B (1.87) BS01 CO 5.3.3.19 GO:0005506 ... P39639 19776011
    725 3h7j:B (1.87) BS02 CO 5.3.3.19 GO:0005506 ... P39639 19776011
    726 3h7y:A (2.22) BS01 CO 5.3.3.19 GO:0005506 ... P39639 19776011
    727 3h7y:A (2.22) BS02 CO 5.3.3.19 GO:0005506 ... P39639 19776011
    728 3h7y:B (2.22) BS01 CO 5.3.3.19 GO:0005506 ... P39639 19776011
    729 3h7y:B (2.22) BS02 CO 5.3.3.19 GO:0005506 ... P39639 19776011
    730 3h9a:A (2.04) BS01 CO 5.3.3.19 GO:0005506 ... P39639 20445239
    731 3h9a:A (2.04) BS02 CO 5.3.3.19 GO:0005506 ... P39639 20445239
    732 3h9a:B (2.04) BS01 CO 5.3.3.19 GO:0005506 ... P39639 20445239
    733 3h9a:B (2.04) BS02 CO 5.3.3.19 GO:0005506 ... P39639 20445239
    734 3hdi:A (2.7) BS03 CO ? GO:0004222 ... Q9KA85 19913481
    735 3hdi:B (2.7) BS03 CO ? GO:0004222 ... Q9KA85 19913481
    736 3htw:A (1.9) BS01 CO ? GO:0008270 ... Q9RVU2 19631223
    737 3htw:A (1.9) BS02 CO ? GO:0008270 ... Q9RVU2 19631223
    738 3i11:A (1.45) BS01 CO 3.5.2.6 GO:0008270 ... P04190 20677753
    739 3i11:A (1.45) BS02 CO 3.5.2.6 GO:0008270 ... P04190 20677753
    740 3i14:A (1.55) BS01 CO 3.5.2.6 GO:0008270 ... P04190 20677753
    741 3i14:A (1.55) BS02 CO 3.5.2.6 GO:0008270 ... P04190 20677753
    742 3i15:A (1.55) BS01 CO 3.5.2.6 GO:0008270 ... P04190 20677753
    743 3igy:B (2.003) BS01 CO 5.4.2.12 GO:0003824 ... Q86N96 19781556
    744 3igy:B (2.003) BS02 CO 5.4.2.12 GO:0003824 ... Q86N96 19781556
    745 3igz:B (1.9) BS01 CO 5.4.2.12 GO:0003824 ... Q86N96 19781556
    746 3igz:B (1.9) BS02 CO 5.4.2.12 GO:0003824 ... Q86N96 19781556
    747 3isq:A (1.75) BS01 CO 1.13.11.27 GO:0000139 ... P32754 N/A
    748 3iuh:A (2.0) BS01 CO 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    749 3iuh:A (2.0) BS02 CO 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    750 3iuh:B (2.0) BS01 CO 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    751 3iuh:B (2.0) BS02 CO 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    752 3iuh:C (2.0) BS01 CO 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    753 3iuh:C (2.0) BS02 CO 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    754 3iuh:D (2.0) BS01 CO 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    755 3iuh:D (2.0) BS02 CO 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    756 3ivs:A (2.24) BS01 CO 2.3.3.14 GO:0003824 ... Q9Y823 19776021
    757 3ivs:B (2.24) BS01 CO 2.3.3.14 GO:0003824 ... Q9Y823 19776021
    758 3ivu:A (2.72) BS01 CO 2.3.3.14 GO:0003824 ... Q9Y823 19776021
    759 3ivu:B (2.72) BS01 CO 2.3.3.14 GO:0003824 ... Q9Y823 19776021
    760 3ka4:A (1.4) BS01 CO 1.16.3.1 GO:0004322 ... P07798 20866049
    761 3ka4:A (1.4) BS02 CO 1.16.3.1 GO:0004322 ... P07798 20866049
    762 3ka4:A (1.4) BS03 CO 1.16.3.1 GO:0004322 ... P07798 20866049
    763 3ka4:A (1.4) BS04 CO 1.16.3.1 GO:0004322 ... P07798 20866049
    764 3ka4:A (1.4) BS05 CO 1.16.3.1 GO:0004322 ... P07798 20866049
    765 3ka4:A (1.4) BS06 CO 1.16.3.1 GO:0004322 ... P07798 20866049
    766 3ka6:A (1.4) BS01 CO 1.16.3.1 GO:0004322 ... P07798 20866049
    767 3ka6:A (1.4) BS02 CO 1.16.3.1 GO:0004322 ... P07798 20866049
    768 3ka6:A (1.4) BS03 CO 1.16.3.1 GO:0004322 ... P07798 20866049
    769 3ka6:A (1.4) BS04 CO 1.16.3.1 GO:0004322 ... P07798 20866049
    770 3ka6:A (1.4) BS05 CO 1.16.3.1 GO:0004322 ... P07798 20866049
    771 3ka8:A (1.35) BS01 CO 1.16.3.1 GO:0004322 ... P07798 20866049
    772 3ka8:A (1.35) BS02 CO 1.16.3.1 GO:0004322 ... P07798 20866049
    773 3ka8:A (1.35) BS03 CO 1.16.3.1 GO:0004322 ... P07798 20866049
    774 3ka9:A (1.45) BS01 CO 1.16.3.1 GO:0004322 ... P07798 N/A
    775 3ka9:A (1.45) BS02 CO 1.16.3.1 GO:0004322 ... P07798 N/A
    776 3ka9:A (1.45) BS03 CO 1.16.3.1 GO:0004322 ... P07798 N/A
    777 3ka9:A (1.45) BS04 CO 1.16.3.1 GO:0004322 ... P07798 N/A
    778 3khb:A (2.9) BS01 CO 1.14.11.33 GO:0005515 ... P05050 20084272
    779 3khb:B (2.9) BS01 CO 1.14.11.33 GO:0005515 ... P05050 20084272
    780 3khc:A (2.2) BS01 CO 1.14.11.33 GO:0005515 ... P05050 20084272
    781 3khc:B (2.2) BS02 CO 1.14.11.33 GO:0005515 ... P05050 20084272
    782 3kok:A (1.5) BS01 CO 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20637176
    783 3kol:A (1.9) BS01 CO ? GO:0004462 ... B2IY64 N/A
    784 3kon:A (1.5) BS01 CO 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20637176
    785 3krg:A (1.9) BS04 CO 4.2.2.2 GO:0005576 ... P39116 20000851
    786 3l0s:A (2.0) BS01 CO 2.7.4.3 GO:0004017 ... C7U112 20821240
    787 3l0s:C (2.0) BS01 CO 2.7.4.3 GO:0004017 ... C7U112 20821240
    788 3lmm:A (3.0) BS01 CO ? N/A Q6NEG3 N/A
    789 3lmm:B (3.0) BS01 CO ? N/A Q6NEG3 N/A
    790 3lmm:C (3.0) BS01 CO ? N/A Q6NEG3 N/A
    791 3lmm:D (3.0) BS01 CO ? N/A Q6NEG3 N/A
    792 3m4z:A (1.94) BS01 CO 4.99.1.9 GO:0004325 ... P32396 N/A
    793 3m59:A (1.7) BS03 CO 2.1.1.364 GO:0005694 ... Q8WTS6 20675860
    794 3m5a:A (1.75) BS03 CO 2.1.1.364 GO:0005694 ... Q8WTS6 20675860
    795 3m5a:A (1.75) BS04 CO 2.1.1.364 GO:0005694 ... Q8WTS6 20675860
    796 3m5a:A (1.75) BS05 CO 2.1.1.364 GO:0005694 ... Q8WTS6 20675860
    797 3mat:A (2.0) BS02 CO 3.4.11.18 GO:0004177 ... P0AE18 10387007
    798 3mat:A (2.0) BS03 CO 3.4.11.18 GO:0004177 ... P0AE18 10387007
    799 3mcr:A (2.65) BS01 CO 7.1.1.- GO:0008137 ... Q47LE6 N/A
    800 3mf3:A (2.5) BS01 CO 4.2.1.1 GO:0004089 ... P45148 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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