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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2133 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 1r8k:A (2.1) BS01 CO 1.1.1.262 GO:0000287 ... P58717 N/A
    202 1r8k:B (2.1) BS01 CO 1.1.1.262 GO:0000287 ... P58717 N/A
    203 1rl4:A (2.18) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 15010544
    204 1rl4:B (2.18) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 15010544
    205 1rmq:A (2.0) BS01 CO 3.1.3.2 GO:0000287 ... P0AE22 N/A
    206 1rmq:B (2.0) BS01 CO 3.1.3.2 GO:0000287 ... P0AE22 N/A
    207 1rqb:A (1.9) BS01 CO 2.1.3.1 GO:0003824 ... Q70AC7 15329673
    208 1rqc:A (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 15010544
    209 1rqc:B (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 15010544
    210 1rqc:C (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 15010544
    211 1rqc:D (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 15010544
    212 1rqc:E (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 15010544
    213 1rqc:F (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 15010544
    214 1rqc:G (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 15010544
    215 1rqc:H (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 15010544
    216 1rqc:I (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 15010544
    217 1rqc:J (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 15010544
    218 1rqe:A (2.5) BS02 CO 2.1.3.1 GO:0003824 ... Q70AC7 15329673
    219 1rqh:A (2.0) BS01 CO 2.1.3.1 GO:0003824 ... Q70AC7 15329673
    220 1rr2:A (2.0) BS01 CO 2.1.3.1 GO:0003824 ... Q70AC7 15329673
    221 1rrk:A (2.0) BS01 CO 3.4.21.47 GO:0004252 ... P00751 15068800
    222 1rv8:A (2.3) BS03 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    223 1rv8:A (2.3) BS04 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    224 1rv8:B (2.3) BS03 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    225 1rv8:C (2.3) BS03 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    226 1rv8:D (2.3) BS02 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    227 1rvg:A (2.0) BS03 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    228 1rvg:A (2.0) BS04 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    229 1rvg:B (2.0) BS03 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    230 1rvg:C (2.0) BS02 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    231 1rvg:D (2.0) BS02 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    232 1rxt:C (3.0) BS01 CO 2.3.1.-
    2.3.1.97    		 GO:0001701 ... P30419 N/A
    233 1rza:A (1.9) BS01 CO 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 15299481
    234 1rzb:A (1.8) BS01 CO 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 15299481
    235 1s3h:A (2.5) BS01 CO 2.1.3.1 GO:0003824 ... Q70AC7 15329673
    236 1scs:A (1.6) BS01 CO ? GO:0030246 ... P02866 15299372
    237 1sth:A (1.85) BS01 CO 3.1.31.1 GO:0003676 ... P00644 7703245
    238 1t31:A (1.9) BS01 CO 3.4.21.39 GO:0002003 ... P23946 15741158
    239 1t5k:A (1.4) BS01 CO ? GO:0005507 ... P22364 15260481
    240 1t5k:B (1.4) BS01 CO ? GO:0005507 ... P22364 15260481
    241 1t5k:C (1.4) BS01 CO ? GO:0005507 ... P22364 15260481
    242 1t5k:D (1.4) BS01 CO ? GO:0005507 ... P22364 15260481
    243 1tu4:B (2.2) BS01 CO 3.6.5.2 GO:0003924 ... P20339 15378032
    244 1tu4:D (2.2) BS01 CO 3.6.5.2 GO:0003924 ... P20339 15378032
    245 1u5j:A (2.8) BS01 CO 2.1.3.1 GO:0003824 ... Q70AC7 15329673
    246 1u8r:A (2.75) BS03 CO ? GO:0003677 ... P9WMH1 15351642
    247 1u8r:A (2.75) BS04 CO ? GO:0003677 ... P9WMH1 15351642
    248 1u8r:A (2.75) BS05 CO ? GO:0003677 ... P9WMH1 15351642
    249 1u8r:B (2.75) BS03 CO ? GO:0003677 ... P9WMH1 15351642
    250 1u8r:B (2.75) BS04 CO ? GO:0003677 ... P9WMH1 15351642
    251 1u8r:B (2.75) BS05 CO ? GO:0003677 ... P9WMH1 15351642
    252 1u8r:C (2.75) BS03 CO ? GO:0003677 ... P9WMH1 15351642
    253 1u8r:C (2.75) BS04 CO ? GO:0003677 ... P9WMH1 15351642
    254 1u8r:C (2.75) BS05 CO ? GO:0003677 ... P9WMH1 15351642
    255 1u8r:D (2.75) BS03 CO ? GO:0003677 ... P9WMH1 15351642
    256 1u8r:D (2.75) BS04 CO ? GO:0003677 ... P9WMH1 15351642
    257 1u8r:D (2.75) BS05 CO ? GO:0003677 ... P9WMH1 15351642
    258 1u8r:G (2.75) BS03 CO ? GO:0003677 ... P9WMH1 15351642
    259 1u8r:G (2.75) BS04 CO ? GO:0003677 ... P9WMH1 15351642
    260 1u8r:G (2.75) BS05 CO ? GO:0003677 ... P9WMH1 15351642
    261 1u8r:H (2.75) BS03 CO ? GO:0003677 ... P9WMH1 15351642
    262 1u8r:H (2.75) BS04 CO ? GO:0003677 ... P9WMH1 15351642
    263 1u8r:H (2.75) BS05 CO ? GO:0003677 ... P9WMH1 15351642
    264 1u8r:I (2.75) BS03 CO ? GO:0003677 ... P9WMH1 15351642
    265 1u8r:I (2.75) BS04 CO ? GO:0003677 ... P9WMH1 15351642
    266 1u8r:I (2.75) BS05 CO ? GO:0003677 ... P9WMH1 15351642
    267 1u8r:J (2.75) BS03 CO ? GO:0003677 ... P9WMH1 15351642
    268 1u8r:J (2.75) BS04 CO ? GO:0003677 ... P9WMH1 15351642
    269 1u8r:J (2.75) BS05 CO ? GO:0003677 ... P9WMH1 15351642
    270 1ugp:A (1.63) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 14717710
    271 1ugr:A (1.8) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 14717710
    272 1ugs:A (2.0) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 14717710
    273 1ukw:B (2.4) BS01 CO 1.3.99.- GO:0000166 ... Q72JJ3 N/A
    274 1v29:A (2.6) BS01 CO 4.2.1.84 GO:0003824 ... Q84FS5 14637142
    275 1vlx:A (1.9) BS01 CO ? GO:0005507 ... P00282 9094740
    276 1vlx:B (1.9) BS01 CO ? GO:0005507 ... P00282 9094740
    277 1vlx:C (1.9) BS01 CO ? GO:0005507 ... P00282 9094740
    278 1vlx:D (1.9) BS01 CO ? GO:0005507 ... P00282 9094740
    279 1vz0:A (2.3) BS01 CO ? GO:0003677 ... Q72H91 15228524
    280 1vz0:B (2.3) BS01 CO ? GO:0003677 ... Q72H91 15228524
    281 1vz0:B (2.3) BS02 CO ? GO:0003677 ... Q72H91 15228524
    282 1vz0:C (2.3) BS01 CO ? GO:0003677 ... Q72H91 15228524
    283 1vz0:C (2.3) BS02 CO ? GO:0003677 ... Q72H91 15228524
    284 1vz0:D (2.3) BS01 CO ? GO:0003677 ... Q72H91 15228524
    285 1vz0:D (2.3) BS02 CO ? GO:0003677 ... Q72H91 15228524
    286 1vz0:D (2.3) BS03 CO ? GO:0003677 ... Q72H91 15228524
    287 1w8q:A (2.85) BS01 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    288 1w8q:A (2.85) BS02 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    289 1w8q:A (2.85) BS03 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    290 1w8q:A (2.85) BS04 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    291 1w8q:B (2.85) BS01 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    292 1w8q:B (2.85) BS02 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    293 1w8q:B (2.85) BS03 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    294 1w8q:B (2.85) BS04 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    295 1w8q:C (2.85) BS01 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    296 1w8q:C (2.85) BS02 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    297 1w8q:C (2.85) BS03 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    298 1w8q:C (2.85) BS04 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    299 1w8q:D (2.85) BS01 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    300 1w8q:D (2.85) BS02 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    301 1w8q:D (2.85) BS03 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    302 1w8q:D (2.85) BS04 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    303 1wmn:A (1.8) BS01 CO 1.4.3.21 GO:0005507 ... P46881 16142901
    304 1wmn:B (1.8) BS01 CO 1.4.3.21 GO:0005507 ... P46881 16142901
    305 1wmp:A (2.0) BS01 CO 1.4.3.21 GO:0005507 ... P46881 16142901
    306 1wmp:B (2.0) BS01 CO 1.4.3.21 GO:0005507 ... P46881 16142901
    307 1wn1:A (2.25) BS01 CO 3.4.-.- GO:0016787 ... O58691 N/A
    308 1wn1:A (2.25) BS02 CO 3.4.-.- GO:0016787 ... O58691 N/A
    309 1wn1:B (2.25) BS01 CO 3.4.-.- GO:0016787 ... O58691 N/A
    310 1wn1:B (2.25) BS02 CO 3.4.-.- GO:0016787 ... O58691 N/A
    311 1xeo:A (1.3) BS01 CO 3.5.1.88 GO:0005515 ... P0A6K3 15796505
    312 1xgm:A (2.8) BS01 CO 3.4.11.18 GO:0004177 ... P56218 9811545
    313 1xgm:A (2.8) BS02 CO 3.4.11.18 GO:0004177 ... P56218 9811545
    314 1xgm:B (2.8) BS01 CO 3.4.11.18 GO:0004177 ... P56218 9811545
    315 1xgm:B (2.8) BS02 CO 3.4.11.18 GO:0004177 ... P56218 9811545
    316 1xgn:A (2.9) BS01 CO 3.4.11.18 GO:0004177 ... P56218 9811545
    317 1xgn:A (2.9) BS02 CO 3.4.11.18 GO:0004177 ... P56218 9811545
    318 1xgn:B (2.9) BS01 CO 3.4.11.18 GO:0004177 ... P56218 9811545
    319 1xgn:B (2.9) BS02 CO 3.4.11.18 GO:0004177 ... P56218 9811545
    320 1xgs:A (1.75) BS01 CO 3.4.11.18 GO:0004177 ... P56218 9811545
    321 1xgs:A (1.75) BS02 CO 3.4.11.18 GO:0004177 ... P56218 9811545
    322 1xgs:B (1.75) BS01 CO 3.4.11.18 GO:0004177 ... P56218 9811545
    323 1xgs:B (1.75) BS02 CO 3.4.11.18 GO:0004177 ... P56218 9811545
    324 1xim:A (2.2) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    325 1xim:A (2.2) BS03 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    326 1xim:B (2.2) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    327 1xim:B (2.2) BS03 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    328 1xim:C (2.2) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    329 1xim:C (2.2) BS03 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    330 1xim:D (2.2) BS02 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    331 1xim:D (2.2) BS03 CO 5.3.1.5 GO:0000287 ... P12851 1540579
    332 1xmh:A (2.32) BS01 CO 1.14.13.25 GO:0004497 ... P22869 15610020
    333 1xmh:A (2.32) BS02 CO 1.14.13.25 GO:0004497 ... P22869 15610020
    334 1xmh:B (2.32) BS01 CO 1.14.13.25 GO:0004497 ... P22869 15610020
    335 1xmh:B (2.32) BS02 CO 1.14.13.25 GO:0004497 ... P22869 15610020
    336 1xuh:A (2.2) BS01 CO 3.4.21.4 GO:0004175 ... P00760 9468142
    337 1y6v:A (1.6) BS01 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    338 1y6v:A (1.6) BS02 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    339 1y6v:A (1.6) BS03 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    340 1y6v:B (1.6) BS01 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    341 1y6v:B (1.6) BS02 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    342 1y6v:B (1.6) BS03 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    343 1y7a:A (1.77) BS01 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    344 1y7a:A (1.77) BS02 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    345 1y7a:A (1.77) BS03 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    346 1y7a:B (1.77) BS01 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    347 1y7a:B (1.77) BS02 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    348 1y7a:B (1.77) BS03 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    349 1ycl:A (1.8) BS01 CO 4.4.1.21 GO:0005506 ... O34667 15751951
    350 1yj3:A (1.6) BS01 CO 3.4.11.18 GO:0004177 ... P9WK19 15882055
    351 1yj3:A (1.6) BS02 CO 3.4.11.18 GO:0004177 ... P9WK19 15882055
    352 1yvm:A (1.6) BS01 CO 3.4.11.18 GO:0004177 ... P0AE18 15880695
    353 1yvm:A (1.6) BS02 CO 3.4.11.18 GO:0004177 ... P0AE18 15880695
    354 1zjc:A (1.8) BS01 CO 3.4.11.- GO:0004177 ... A0A0H3K3S3 15932875
    355 1zjc:A (1.8) BS02 CO 3.4.11.- GO:0004177 ... A0A0H3K3S3 15932875
    356 1zjc:A (1.8) BS03 CO 3.4.11.- GO:0004177 ... A0A0H3K3S3 15932875
    357 1zzb:A (2.3) BS01 CO 1.11.1.23 GO:0003677 ... Q56185 16015285
    358 1zzb:B (2.3) BS01 CO 1.11.1.23 GO:0003677 ... Q56185 16015285
    359 1zzc:A (1.8) BS01 CO 1.11.1.23 GO:0003677 ... Q56185 16015285
    360 1zzc:B (1.8) BS01 CO 1.11.1.23 GO:0003677 ... Q56185 16015285
    361 259l:A (1.92) BS01 CO 3.2.1.17 GO:0003796 ... P00720 10835104
    362 2adu:A (1.9) BS01 CO 3.4.11.18 GO:0006508 ... P50579 16134930
    363 2adu:A (1.9) BS02 CO 3.4.11.18 GO:0006508 ... P50579 16134930
    364 2amx:A (2.02) BS01 CO 3.5.4.4 GO:0004000 ... Q7RMV2 17125854
    365 2amx:A (2.02) BS02 CO 3.5.4.4 GO:0004000 ... Q7RMV2 17125854
    366 2amx:B (2.02) BS01 CO 3.5.4.4 GO:0004000 ... Q7RMV2 17125854
    367 2amx:B (2.02) BS02 CO 3.5.4.4 GO:0004000 ... Q7RMV2 17125854
    368 2amx:B (2.02) BS03 CO 3.5.4.4 GO:0004000 ... Q7RMV2 17125854
    369 2b3h:A (1.1) BS01 CO 3.4.11.18 GO:0006508 ... P53582 16274222
    370 2b3h:A (1.1) BS02 CO 3.4.11.18 GO:0006508 ... P53582 16274222
    371 2b3k:A (1.55) BS01 CO 3.4.11.18 GO:0006508 ... P53582 16274222
    372 2b3k:A (1.55) BS02 CO 3.4.11.18 GO:0006508 ... P53582 16274222
    373 2bdi:A (3.0) BS01 CO 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    374 2bdi:E (3.0) BS01 CO 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    375 2bdi:M (3.0) BS01 CO 3.4.21.- GO:0004252 ... Q9Y5K2 16950394
    376 2bo7:A (2.95) BS02 CO 2.4.1.269 GO:0016740 ... Q9RFR0 15951819
    377 2bo7:B (2.95) BS02 CO 2.4.1.269 GO:0016740 ... Q9RFR0 15951819
    378 2bo7:C (2.95) BS02 CO 2.4.1.269 GO:0016740 ... Q9RFR0 15951819
    379 2bo7:D (2.95) BS02 CO 2.4.1.269 GO:0016740 ... Q9RFR0 15951819
    380 2bo7:E (2.95) BS02 CO 2.4.1.269 GO:0016740 ... Q9RFR0 15951819
    381 2bo7:F (2.95) BS02 CO 2.4.1.269 GO:0016740 ... Q9RFR0 15951819
    382 2bo7:G (2.95) BS02 CO 2.4.1.269 GO:0016740 ... Q9RFR0 15951819
    383 2bo7:H (2.95) BS02 CO 2.4.1.269 GO:0016740 ... Q9RFR0 15951819
    384 2bo7:I (2.95) BS02 CO 2.4.1.269 GO:0016740 ... Q9RFR0 15951819
    385 2bo7:J (2.95) BS02 CO 2.4.1.269 GO:0016740 ... Q9RFR0 15951819
    386 2c79:A (1.5) BS01 CO 3.2.1.8 GO:0005975 ... O87119 16431911
    387 2cf4:A (3.08) BS01 CO 3.4.11.- GO:0004177 ... O58255 16973604
    388 2cf4:A (3.08) BS02 CO 3.4.11.- GO:0004177 ... O58255 16973604
    389 2cla:A (2.35) BS01 CO 2.3.1.28 GO:0008811 ... P00484 2271709
    390 2d2g:A (1.85) BS01 CO 3.1.8.1 GO:0008270 ... Q93LD7 16054447
    391 2d2g:A (1.85) BS02 CO 3.1.8.1 GO:0008270 ... Q93LD7 16054447
    392 2d2h:A (1.8) BS01 CO 3.1.8.1 GO:0008270 ... Q93LD7 16054447
    393 2d2h:A (1.8) BS02 CO 3.1.8.1 GO:0008270 ... Q93LD7 16054447
    394 2d2j:A (1.75) BS01 CO 3.1.8.1 GO:0008270 ... Q93LD7 16054447
    395 2d2j:A (1.75) BS02 CO 3.1.8.1 GO:0008270 ... Q93LD7 16054447
    396 2d2x:A (2.3) BS01 CO 4.2.3.124 GO:0003856 ... Q9S5E2 17879343
    397 2d2x:A (2.3) BS02 CO 4.2.3.124 GO:0003856 ... Q9S5E2 17879343
    398 2d2x:A (2.3) BS03 CO 4.2.3.124 GO:0003856 ... Q9S5E2 17879343
    399 2d2x:B (2.3) BS01 CO 4.2.3.124 GO:0003856 ... Q9S5E2 17879343
    400 2dds:A (1.8) BS01 CO 3.1.4.12 GO:0003824 ... P11889 16595670
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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