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BioLiP
Download all results in tab-seperated text for 2133 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 7b23:D (2.15) BS04 CO ? GO:0003677 ... N/A 34417623
    1802 7b23:aa (2.15) BS01 CO ? GO:0003677 ... N/A 34417623
    1803 7b23:dd (2.15) BS01 CO ? GO:0003677 ... N/A 34417623
    1804 7b24:A (2.05) BS03 CO ? GO:0003677 ... N/A 34417623
    1805 7b24:A (2.05) BS04 CO ? GO:0003677 ... N/A 34417623
    1806 7b24:B (2.05) BS03 CO ? GO:0003677 ... N/A 34417623
    1807 7b24:B (2.05) BS04 CO ? GO:0003677 ... N/A 34417623
    1808 7b24:C (2.05) BS03 CO ? GO:0003677 ... N/A 34417623
    1809 7b24:C (2.05) BS04 CO ? GO:0003677 ... N/A 34417623
    1810 7b24:D (2.05) BS03 CO ? GO:0003677 ... N/A 34417623
    1811 7b24:D (2.05) BS04 CO ? GO:0003677 ... N/A 34417623
    1812 7b24:aa (2.05) BS01 CO ? GO:0003677 ... N/A 34417623
    1813 7b24:dd (2.05) BS01 CO ? GO:0003677 ... N/A 34417623
    1814 7b25:A (2.34) BS03 CO ? GO:0003677 ... N/A 34417623
    1815 7b25:A (2.34) BS04 CO ? GO:0003677 ... N/A 34417623
    1816 7b25:B (2.34) BS03 CO ? GO:0003677 ... N/A 34417623
    1817 7b25:B (2.34) BS04 CO ? GO:0003677 ... N/A 34417623
    1818 7b25:C (2.34) BS03 CO ? GO:0003677 ... N/A 34417623
    1819 7b25:C (2.34) BS04 CO ? GO:0003677 ... N/A 34417623
    1820 7b25:D (2.34) BS03 CO ? GO:0003677 ... N/A 34417623
    1821 7b25:D (2.34) BS04 CO ? GO:0003677 ... N/A 34417623
    1822 7b25:aa (2.34) BS01 CO ? GO:0003677 ... N/A 34417623
    1823 7b25:dd (2.34) BS01 CO ? GO:0003677 ... N/A 34417623
    1824 7cel:A (1.9) BS09 CO 3.2.1.91 GO:0004553 ... P62694 9466911
    1825 7cel:A (1.9) BS10 CO 3.2.1.91 GO:0004553 ... P62694 9466911
    1826 7cjk:A (1.698) BS02 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1827 7cqr:A (1.947) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1828 7cqs:A (1.998) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1829 7d1y:A (1.95) BS01 CO 2.3.2.5 GO:0005576 ... B7QK46 33774034
    1830 7d1y:A (1.95) BS02 CO 2.3.2.5 GO:0005576 ... B7QK46 33774034
    1831 7dgk:A (1.75) BS02 CO 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 33578251
    1832 7dgk:B (1.75) BS03 CO 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 33578251
    1833 7dgn:A (2.35) BS02 CO 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 33578251
    1834 7dgn:B (2.35) BS03 CO 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 33578251
    1835 7din:A (1.799) BS01 CO 1.8.4.2 GO:0015038 ... Q9NLB2 N/A
    1836 7e0x:A (1.887) BS01 CO 1.13.11.27 GO:0003868 ... P93836 34542283
    1837 7eta:A (1.9) BS02 CO 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    1838 7eta:B (1.9) BS02 CO 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    1839 7eta:C (1.9) BS02 CO 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    1840 7etg:A (1.9) BS02 CO 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    1841 7etg:B (1.9) BS03 CO 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    1842 7etg:C (1.9) BS03 CO 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    1843 7etl:A (1.99213) BS01 CO 1.14.11.38 GO:0005575 ... Q4WAW9 34796596
    1844 7etl:B (1.99213) BS01 CO 1.14.11.38 GO:0005575 ... Q4WAW9 34796596
    1845 7ezq:A (1.886) BS02 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1846 7l5f:A (1.51) BS01 CO 3.1.1.81 GO:0016787 ... P0CJ63 34095651
    1847 7l5f:A (1.51) BS02 CO 3.1.1.81 GO:0016787 ... P0CJ63 34095651
    1848 7lrb:A (1.78) BS02 CO ? GO:0005506 ... P0ABE7 35236987
    1849 7lrb:A (1.78) BS03 CO ? GO:0005506 ... P0ABE7 35236987
    1850 7lrb:B (1.78) BS01 CO ? GO:0005506 ... P0ABE7 35236987
    1851 7lrb:B (1.78) BS03 CO ? GO:0005506 ... P0ABE7 35236987
    1852 7lrr:A (1.89) BS02 CO ? GO:0005506 ... P0ABE7 35236987
    1853 7lrr:A (1.89) BS03 CO ? GO:0005506 ... P0ABE7 35236987
    1854 7lrr:B (1.89) BS01 CO ? GO:0005506 ... P0ABE7 35236987
    1855 7lrr:B (1.89) BS03 CO ? GO:0005506 ... P0ABE7 35236987
    1856 7mbl:A (2.7) BS01 CO ? GO:0003677 ... P35747 37325156
    1857 7mbl:A (2.7) BS02 CO ? GO:0003677 ... P35747 37325156
    1858 7mk4:A (1.27) BS02 CO ? GO:0005506 ... P0ABE7 35236987
    1859 7mk4:A (1.27) BS03 CO ? GO:0005506 ... P0ABE7 35236987
    1860 7mk4:B (1.27) BS01 CO ? GO:0005506 ... P0ABE7 35236987
    1861 7mk4:B (1.27) BS03 CO ? GO:0005506 ... P0ABE7 35236987
    1862 7n4g:A (1.93) BS02 CO ? GO:0005506 ... P0ABE7 35236987
    1863 7n4g:C (1.93) BS02 CO ? GO:0005506 ... P0ABE7 35236987
    1864 7njg:A (1.9) BS01 CO 5.3.1.5 GO:0000287 ... P24300 34076595
    1865 7nqf:A (2.02) BS03 CO ? N/A H2J4R1 35508653
    1866 7nqf:A (2.02) BS04 CO ? N/A H2J4R1 35508653
    1867 7nqf:B (2.02) BS03 CO ? N/A H2J4R1 35508653
    1868 7nqf:B (2.02) BS04 CO ? N/A H2J4R1 35508653
    1869 7nyt:A (1.09) BS04 CO 3.2.1.91 GO:0004553 ... P62694 35997626
    1870 7nyt:A (1.09) BS05 CO 3.2.1.91 GO:0004553 ... P62694 35997626
    1871 7o99:A (1.24) BS01 CO ? GO:0016491 ... F9VPE5 34757735
    1872 7o99:A (1.24) BS02 CO ? GO:0016491 ... F9VPE5 34757735
    1873 7o99:B (1.24) BS01 CO ? GO:0016491 ... F9VPE5 34757735
    1874 7o99:B (1.24) BS02 CO ? GO:0016491 ... F9VPE5 34757735
    1875 7o99:B (1.24) BS03 CO ? GO:0016491 ... F9VPE5 34757735
    1876 7o9d:A (1.28) BS01 CO ? GO:0016491 ... F9VPE5 34757735
    1877 7o9d:A (1.28) BS02 CO ? GO:0016491 ... F9VPE5 34757735
    1878 7o9d:B (1.28) BS02 CO ? GO:0016491 ... F9VPE5 34757735
    1879 7o9d:B (1.28) BS03 CO ? GO:0016491 ... F9VPE5 34757735
    1880 7o9d:B (1.28) BS04 CO ? GO:0016491 ... F9VPE5 34757735
    1881 7oc8:A (1.6) BS05 CO 3.2.1.91 GO:0004553 ... P62694 35997626
    1882 7oc8:A (1.6) BS06 CO 3.2.1.91 GO:0004553 ... P62694 35997626
    1883 7oc8:A (1.6) BS07 CO 3.2.1.91 GO:0004553 ... P62694 35997626
    1884 7p3b:A (2.3) BS02 CO 6.5.1.8 GO:0001701 ... Q9Y3I0 34854379
    1885 7p3b:A (2.3) BS03 CO 6.5.1.8 GO:0001701 ... Q9Y3I0 34854379
    1886 7p3b:B (2.3) BS02 CO 6.5.1.8 GO:0001701 ... Q9Y3I0 34854379
    1887 7p3b:B (2.3) BS03 CO 6.5.1.8 GO:0001701 ... Q9Y3I0 34854379
    1888 7p9j:A (1.9) BS01 CO ? N/A H2J4R1 35508653
    1889 7p9j:A (1.9) BS02 CO ? N/A H2J4R1 35508653
    1890 7p9j:B (1.9) BS02 CO ? N/A H2J4R1 35508653
    1891 7p9j:B (1.9) BS03 CO ? N/A H2J4R1 35508653
    1892 7p9j:C (1.9) BS01 CO ? N/A H2J4R1 35508653
    1893 7p9j:C (1.9) BS02 CO ? N/A H2J4R1 35508653
    1894 7q9e:B (1.7) BS02 CO 1.14.14.- GO:0004497 ... D5DF35 36151590
    1895 7qaz:A (2.11) BS01 CO ? N/A H2J4R1 35508653
    1896 7qaz:B (2.11) BS02 CO ? N/A H2J4R1 35508653
    1897 7qaz:B (2.11) BS03 CO ? N/A H2J4R1 35508653
    1898 7qaz:C (2.11) BS01 CO ? N/A H2J4R1 35508653
    1899 7qaz:C (2.11) BS02 CO ? N/A H2J4R1 35508653
    1900 7qom:A (1.45) BS01 CO 4.2.1.84 GO:0003824 ... Q84FS5 N/A
    1901 7qop:A (1.8) BS01 CO 4.2.1.84 GO:0003824 ... Q84FS5 36106339
    1902 7qou:A (1.3) BS01 CO 4.2.1.84 GO:0003824 ... Q84FS5 36106339
    1903 7qte:A (1.81) BS01 CO ? GO:0005737 ... Q2I752 N/A
    1904 7qte:B (1.81) BS01 CO ? GO:0005737 ... Q2I752 N/A
    1905 7rzk:A (1.9) BS04 CO ? GO:0004371 ... Q2FZ58 N/A
    1906 7s0w:A (2.5) BS01 CO 5.4.2.2 GO:0000287 ... P36871 35506765
    1907 7s0w:B (2.5) BS01 CO 5.4.2.2 GO:0000287 ... P36871 35506765
    1908 7su2:A (2.0) BS01 CO ? GO:0005506 ... P0ABE7 35642584
    1909 7su2:A (2.0) BS03 CO ? GO:0005506 ... P0ABE7 35642584
    1910 7su2:C (2.0) BS02 CO ? GO:0005506 ... P0ABE7 35642584
    1911 7su2:D (2.0) BS02 CO ? GO:0005506 ... P0ABE7 35642584
    1912 7su2:G (2.0) BS01 CO ? GO:0005506 ... P0ABE7 35642584
    1913 7su2:G (2.0) BS03 CO ? GO:0005506 ... P0ABE7 35642584
    1914 7t7k:A (1.9) BS02 CO 3.1.3.- GO:0004427 ... Q9UT55 35314193
    1915 7t7k:A (1.9) BS03 CO 3.1.3.- GO:0004427 ... Q9UT55 35314193
    1916 7t7k:B (1.9) BS03 CO 3.1.3.- GO:0004427 ... Q9UT55 35314193
    1917 7t7k:B (1.9) BS04 CO 3.1.3.- GO:0004427 ... Q9UT55 35314193
    1918 7t7o:A (2.16) BS01 CO 3.1.3.- GO:0004427 ... Q9UT55 35314193
    1919 7t7o:B (2.16) BS01 CO 3.1.3.- GO:0004427 ... Q9UT55 35314193
    1920 7u1y:A (1.81) BS04 CO 3.1.3.- GO:0004427 ... Q9UT55 35314193
    1921 7v6x:A (1.8) BS01 CO 1.13.11.27 GO:0003868 ... P93836 35618678
    1922 7vc8:A (1.606) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1923 7vo8:A (1.75) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1924 7w6v:A (2.47) BS01 CO ? GO:0005507 ... Q9XAL8 36322668
    1925 7w8l:A (2.301) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 35919716
    1926 7w8m:A (2.6) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 35919716
    1927 7waj:A (2.254) BS02 CO 6.1.1.17 GO:0000166 ... Q8IDK7 36370911
    1928 7waj:A (2.254) BS03 CO 6.1.1.17 GO:0000166 ... Q8IDK7 36370911
    1929 7wal:A (2.29) BS01 CO 6.1.1.17 GO:0000166 ... Q8IDK7 36370911
    1930 7wal:A (2.29) BS02 CO 6.1.1.17 GO:0000166 ... Q8IDK7 36370911
    1931 7wj8:A (1.805) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1932 7wjj:A (1.603) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1933 7wjk:A (1.704) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1934 7wsb:A (2.87) BS01 CO 1.14.11.38 GO:0005575 ... Q4WAW9 35911443
    1935 7wsb:B (2.87) BS01 CO 1.14.11.38 GO:0005575 ... Q4WAW9 35911443
    1936 7wsb:C (2.87) BS01 CO 1.14.11.38 GO:0005575 ... Q4WAW9 35911443
    1937 7wsb:D (2.87) BS01 CO 1.14.11.38 GO:0005575 ... Q4WAW9 35911443
    1938 7wsb:E (2.87) BS01 CO 1.14.11.38 GO:0005575 ... Q4WAW9 35911443
    1939 7wsb:F (2.87) BS01 CO 1.14.11.38 GO:0005575 ... Q4WAW9 35911443
    1940 7x5r:A (1.644) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1941 7x5s:A (1.706) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1942 7x5u:A (1.6) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1943 7x5w:A (1.598) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1944 7x5x:A (2.196) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1945 7x5y:A (1.498) BS01 CO 1.13.11.27 GO:0003868 ... P93836 36599124
    1946 7x5z:A (1.688) BS01 CO 1.13.11.27 GO:0003868 ... P93836 36599124
    1947 7x62:A (2.004) BS01 CO 1.13.11.27 GO:0003868 ... P93836 36599124
    1948 7x64:A (2.288) BS01 CO 1.13.11.27 GO:0003868 ... P93836 36599124
    1949 7x67:A (1.996) BS01 CO 1.13.11.27 GO:0003868 ... P93836 36599124
    1950 7x69:A (1.797) BS01 CO 1.13.11.27 GO:0003868 ... P93836 36599124
    1951 7x6m:A (1.815) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1952 7x6n:A (1.691) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1953 7x7l:A (1.887) BS01 CO ? GO:0003868 ... A0A1D6H1G0 N/A
    1954 7x7l:B (1.887) BS01 CO ? GO:0003868 ... A0A1D6H1G0 N/A
    1955 7x7l:C (1.887) BS01 CO ? GO:0003868 ... A0A1D6H1G0 N/A
    1956 7x7l:D (1.887) BS01 CO ? GO:0003868 ... A0A1D6H1G0 N/A
    1957 7x8d:A (1.695) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    1958 7x8e:A (2.749) BS01 CO N/A GO:0003868 ... N/A N/A
    1959 7x8e:B (2.749) BS01 CO N/A GO:0003868 ... N/A N/A
    1960 7x8e:C (2.749) BS01 CO N/A GO:0003868 ... N/A N/A
    1961 7x8e:D (2.749) BS01 CO N/A GO:0003868 ... N/A N/A
    1962 7x8e:E (2.749) BS01 CO N/A GO:0003868 ... N/A N/A
    1963 7x8e:F (2.749) BS01 CO N/A GO:0003868 ... N/A N/A
    1964 7x8e:G (2.749) BS01 CO N/A GO:0003868 ... N/A N/A
    1965 7x8e:H (2.749) BS01 CO N/A GO:0003868 ... N/A N/A
    1966 7x8h:A (1.986) BS01 CO 1.13.11.27 GO:0003868 ... P93836 36599124
    1967 7x8i:A (2.096) BS01 CO 1.13.11.27 GO:0003868 ... P93836 36599124
    1968 7x9z:A (2.29) BS01 CO 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    1969 7x9z:A (2.29) BS02 CO 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    1970 7x9z:A (2.29) BS03 CO 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    1971 7x9z:A (2.29) BS04 CO 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    1972 7x9z:A (2.29) BS05 CO 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    1973 7x9z:A (2.29) BS06 CO 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    1974 7x9z:B (2.29) BS01 CO 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    1975 7x9z:B (2.29) BS02 CO 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    1976 7x9z:B (2.29) BS03 CO 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    1977 7x9z:B (2.29) BS04 CO 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    1978 7x9z:B (2.29) BS05 CO 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    1979 7xnt:A (1.822) BS01 CO N/A GO:0003868 ... N/A N/A
    1980 7xnt:B (1.822) BS01 CO N/A GO:0003868 ... N/A N/A
    1981 7xnt:C (1.822) BS01 CO N/A GO:0003868 ... N/A N/A
    1982 7xnt:G (1.822) BS01 CO N/A GO:0003868 ... N/A N/A
    1983 7xvh:A (1.83) BS01 CO 1.13.11.27 GO:0003868 ... P93836 36599124
    1984 7z0v:A (1.45) BS01 CO 4.2.1.84 GO:0003824 ... Q84FS5 36106339
    1985 7zd2:A (2.16) BS03 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    1986 7zd2:A (2.16) BS04 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    1987 7zd2:B (2.16) BS04 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    1988 7zd2:B (2.16) BS05 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    1989 7zd2:C (2.16) BS04 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    1990 7zd2:C (2.16) BS05 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    1991 7zd2:D (2.16) BS05 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    1992 7zd2:D (2.16) BS06 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    1993 7zzl:B (1.7) BS02 CO 1.14.14.- GO:0004497 ... D5DF35 36151590
    1994 8c6z:A (1.85) BS01 CO ? GO:0005975 ... F8UNI4 N/A
    1995 8cge:A (2.5) BS01 CO N/A N/A N/A 37507458
    1996 8cge:A (2.5) BS02 CO N/A N/A N/A 37507458
    1997 8cge:B (2.5) BS01 CO N/A N/A N/A 37507458
    1998 8cge:B (2.5) BS02 CO N/A N/A N/A 37507458
    1999 8cop:A (1.8) BS03 CO 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    2000 8cop:A (1.8) BS04 CO 1.5.1.3 GO:0004146 ... P9WNX1 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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