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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2133 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a0c:A (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    2 1a0c:A (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    3 1a0c:B (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    4 1a0c:B (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    5 1a0c:C (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    6 1a0c:C (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    7 1a0c:D (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    8 1a0c:D (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    9 1a0e:A (2.7) BS01 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    10 1a0e:A (2.7) BS02 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    11 1a0e:D (2.7) BS01 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    12 1a0e:D (2.7) BS02 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    13 1b59:A (1.8) BS01 CO 3.4.11.18 GO:0006508 ... P50579 9812898
    14 1b59:A (1.8) BS02 CO 3.4.11.18 GO:0006508 ... P50579 9812898
    15 1b6a:A (1.6) BS01 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    16 1b6a:A (1.6) BS02 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    17 1bn5:A (1.8) BS01 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    18 1bn5:A (1.8) BS02 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    19 1boa:A (1.8) BS01 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    20 1boa:A (1.8) BS02 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    21 1bsj:A (3.0) BS01 CO 3.5.1.88 GO:0005515 ... P0A6K3 10200158
    22 1c0w:A (3.2) BS03 CO ? GO:0003677 ... P0DJL7 10497029
    23 1c0w:A (3.2) BS04 CO ? GO:0003677 ... P0DJL7 10497029
    24 1c0w:B (3.2) BS03 CO ? GO:0003677 ... P0DJL7 10497029
    25 1c0w:B (3.2) BS04 CO ? GO:0003677 ... P0DJL7 10497029
    26 1c0w:C (3.2) BS03 CO ? GO:0003677 ... P0DJL7 10497029
    27 1c0w:C (3.2) BS04 CO ? GO:0003677 ... P0DJL7 10497029
    28 1c0w:D (3.2) BS03 CO ? GO:0003677 ... P0DJL7 10497029
    29 1c0w:D (3.2) BS04 CO ? GO:0003677 ... P0DJL7 10497029
    30 1c21:A (1.8) BS01 CO 3.4.11.18 GO:0004177 ... P0AE18 10555963
    31 1c21:A (1.8) BS02 CO 3.4.11.18 GO:0004177 ... P0AE18 10555963
    32 1c22:A (1.75) BS01 CO 3.4.11.18 GO:0004177 ... P0AE18 10555963
    33 1c22:A (1.75) BS02 CO 3.4.11.18 GO:0004177 ... P0AE18 10555963
    34 1c23:A (2.0) BS01 CO 3.4.11.18 GO:0004177 ... P0AE18 10555963
    35 1c23:A (2.0) BS02 CO 3.4.11.18 GO:0004177 ... P0AE18 10555963
    36 1c24:A (1.7) BS01 CO 3.4.11.18 GO:0004177 ... P0AE18 10555963
    37 1c24:A (1.7) BS02 CO 3.4.11.18 GO:0004177 ... P0AE18 10555963
    38 1c27:A (1.95) BS01 CO 3.4.11.18 GO:0004177 ... P0AE18 10555963
    39 1c27:A (1.95) BS02 CO 3.4.11.18 GO:0004177 ... P0AE18 10555963
    40 1c4g:A (2.7) BS01 CO 5.4.2.2 GO:0000287 ... P00949 N/A
    41 1cah:A (1.88) BS01 CO 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 1474587
    42 1cia:A (2.5) BS01 CO 2.3.1.28 GO:0008811 ... P00484 7906544
    43 1cla:A (2.34) BS01 CO 2.3.1.28 GO:0008811 ... P00484 2109633
    44 1clk:A (1.9) BS02 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    45 1cob:A (2.0) BS02 CO 1.15.1.1 GO:0000209 ... P00442 1619651
    46 1cob:B (2.0) BS02 CO 1.15.1.1 GO:0000209 ... P00442 1619651
    47 1dy4:A (1.9) BS02 CO 3.2.1.91 GO:0004553 ... P62694 11114249
    48 1dy4:A (1.9) BS03 CO 3.2.1.91 GO:0004553 ... P62694 11114249
    49 1dzi:A (2.1) BS03 CO ? N/A P17301 10778855
    50 1egn:A (1.6) BS01 CO 3.2.1.91 GO:0004553 ... P62694 11336632
    51 1egn:A (1.6) BS02 CO 3.2.1.91 GO:0004553 ... P62694 11336632
    52 1ens:A (2.8) BS01 CO ? GO:0030246 ... P02866 8663112
    53 1ens:B (2.8) BS01 CO ? GO:0030246 ... P02866 8663112
    54 1epy:A (1.85) BS01 CO 3.2.1.17 GO:0003796 ... P00720 10835104
    55 1fa6:A (1.9) BS01 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    56 1fa6:A (1.9) BS02 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    57 1fa6:B (1.9) BS01 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    58 1fa6:B (1.9) BS02 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    59 1fof:A (2.0) BS01 CO 3.5.2.6 GO:0008658 ... P14489 11017203
    60 1fof:B (2.0) BS01 CO 3.5.2.6 GO:0008658 ... P14489 11017203
    61 1fqr:A (2.0) BS01 CO 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11076507
    62 1fsq:A (2.0) BS01 CO 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11076507
    63 1fsq:B (2.0) BS01 CO 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11076507
    64 1fx7:A (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    65 1fx7:A (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    66 1fx7:A (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    67 1fx7:B (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    68 1fx7:B (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    69 1fx7:B (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    70 1fx7:C (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    71 1fx7:C (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    72 1fx7:C (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    73 1fx7:D (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    74 1fx7:D (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    75 1fx7:D (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    76 1g16:A (1.8) BS01 CO ? GO:0003924 ... P07560 11099382
    77 1g16:D (1.8) BS01 CO ? GO:0003924 ... P07560 11099382
    78 1gqi:A (1.48) BS01 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    79 1gqi:A (1.48) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    80 1gqi:A (1.48) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    81 1gqi:B (1.48) BS01 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    82 1gqi:B (1.48) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    83 1gqi:B (1.48) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    84 1gqi:B (1.48) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    85 1gqj:A (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    86 1gqj:A (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    87 1gqj:A (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    88 1gqj:A (1.9) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    89 1gqj:B (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    90 1gqj:B (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    91 1gqj:B (1.9) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    92 1gqk:A (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    93 1gqk:A (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    94 1gqk:A (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    95 1gqk:B (1.9) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    96 1gqk:B (1.9) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    97 1gqk:B (1.9) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    98 1gql:A (1.67) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    99 1gql:A (1.67) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    100 1gql:A (1.67) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    101 1gql:A (1.67) BS06 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    102 1gql:B (1.67) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    103 1gql:B (1.67) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    104 1gql:B (1.67) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 11937059
    105 1gwm:A (1.15) BS04 CO ? N/A Q9C171 12391332
    106 1h0n:A (2.4) BS01 CO 1.17.4.1 GO:0001824 ... P11157 12087093
    107 1h0n:A (2.4) BS02 CO 1.17.4.1 GO:0001824 ... P11157 12087093
    108 1h0o:A (2.2) BS01 CO 1.17.4.1 GO:0001824 ... P11157 12087093
    109 1h41:A (1.5) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    110 1h41:A (1.5) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    111 1h41:A (1.5) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    112 1h41:A (1.5) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    113 1h41:A (1.5) BS06 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    114 1h41:B (1.5) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    115 1h41:B (1.5) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    116 1h41:B (1.5) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    117 1h41:B (1.5) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    118 1hv9:B (2.1) BS01 CO 2.3.1.157
    2.7.7.23    		 GO:0000287 ... P0ACC7 11329257
    119 1iab:A (1.79) BS01 CO 3.4.24.21 GO:0004222 ... P07584 8006015
    120 1iqx:A (2.0) BS01 CO 1.4.3.21 GO:0005507 ... P46881 12537504
    121 1iqx:B (2.0) BS01 CO 1.4.3.21 GO:0005507 ... P46881 12537504
    122 1ire:A (1.8) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 11700034
    123 1jn1:A (2.9) BS01 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    124 1jn1:B (2.9) BS01 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    125 1jn1:C (2.9) BS01 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    126 1jn1:C (2.9) BS02 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    127 1jym:A (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    128 1jym:B (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    129 1jym:C (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    130 1jym:D (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    131 1jym:E (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    132 1jym:F (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    133 1jym:G (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    134 1jym:H (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    135 1jym:I (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    136 1jym:J (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    137 1k1e:A (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    138 1k1e:B (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    139 1k1e:C (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    140 1k1e:D (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    141 1k1e:E (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    142 1k1e:F (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    143 1k1e:G (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    144 1k1e:H (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    145 1k1e:I (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    146 1k1e:J (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    147 1k1e:K (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    148 1k1e:L (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    149 1kej:A (3.0) BS01 CO 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 11823435
    150 1kej:A (3.0) BS02 CO 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 11823435
    151 1l8x:B (2.7) BS01 CO 4.98.1.1 GO:0004325 ... P16622 12427010
    152 1lna:E (1.9) BS03 CO 3.4.24.27 GO:0004222 ... P00800 8535232
    153 1lna:E (1.9) BS06 CO 3.4.24.27 GO:0004222 ... P00800 8535232
    154 1m38:A (1.8) BS01 CO 3.6.1.1 GO:0000287 ... P00817 N/A
    155 1m38:A (1.8) BS02 CO 3.6.1.1 GO:0000287 ... P00817 N/A
    156 1m38:B (1.8) BS01 CO 3.6.1.1 GO:0000287 ... P00817 N/A
    157 1mat:A (2.4) BS01 CO 3.4.11.18 GO:0004177 ... P0AE18 8471602
    158 1mat:A (2.4) BS02 CO 3.4.11.18 GO:0004177 ... P0AE18 8471602
    159 1of8:A (1.5) BS01 CO 2.5.1.54 GO:0003849 ... P32449 15019786
    160 1of8:B (1.5) BS01 CO 2.5.1.54 GO:0003849 ... P32449 15019786
    161 1ofa:A (2.02) BS02 CO 2.5.1.54 GO:0003849 ... P32449 15019786
    162 1ofa:B (2.02) BS01 CO 2.5.1.54 GO:0003849 ... P32449 15019786
    163 1ovu:A (3.1) BS01 CO N/A N/A N/A 16332076
    164 1ovu:B (3.1) BS01 CO N/A N/A N/A 16332076
    165 1ovu:C (3.1) BS01 CO N/A N/A N/A 16332076
    166 1ovu:D (3.1) BS01 CO N/A N/A N/A 16332076
    167 1ovu:D (3.1) BS02 CO N/A N/A N/A 16332076
    168 1ovv:A (2.9) BS01 CO N/A N/A N/A 16332076
    169 1ovv:B (2.9) BS01 CO N/A N/A N/A 16332076
    170 1ovv:C (2.9) BS01 CO N/A N/A N/A 16332076
    171 1ovv:D (2.9) BS01 CO N/A N/A N/A 16332076
    172 1ovv:E (2.9) BS01 CO N/A N/A N/A 16332076
    173 1ovv:F (2.9) BS01 CO N/A N/A N/A 16332076
    174 1ovv:F (2.9) BS02 CO N/A N/A N/A 16332076
    175 1q2b:A (1.6) BS01 CO 3.2.1.91 GO:0004553 ... P62694 14568538
    176 1q2b:A (1.6) BS02 CO 3.2.1.91 GO:0004553 ... P62694 14568538
    177 1qca:A (2.2) BS01 CO 2.3.1.28 GO:0008811 ... P00484 7500366
    178 1qq0:A (1.76) BS01 CO 4.2.1.1 N/A P40881 10924115
    179 1qre:A (1.46) BS02 CO 4.2.1.1 N/A P40881 10924115
    180 1qrf:A (1.55) BS01 CO 4.2.1.1 GO:0004089 ... P40881 10924115
    181 1qt1:A (1.85) BS01 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    182 1qt1:A (1.85) BS02 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    183 1qt1:B (1.85) BS01 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    184 1qt1:B (1.85) BS02 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    185 1qw7:A (1.9) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 16188223
    186 1qw7:A (1.9) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 16188223
    187 1qw7:B (1.9) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 16188223
    188 1qw7:B (1.9) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 16188223
    189 1qxw:A (1.67) BS01 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    190 1qxw:A (1.67) BS02 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    191 1qxy:A (1.04) BS01 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    192 1qxy:A (1.04) BS02 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    193 1qxy:A (1.04) BS03 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    194 1qxz:A (1.68) BS01 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    195 1qxz:A (1.68) BS02 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    196 1qxz:A (1.68) BS03 CO 3.4.11.18 GO:0004177 ... P0A078 14998322
    197 1qzy:A (1.6) BS01 CO 3.4.11.18 GO:0003723 ... P50579 14534293
    198 1qzy:A (1.6) BS02 CO 3.4.11.18 GO:0003723 ... P50579 14534293
    199 1r0h:A (1.7) BS01 CO ? GO:0005506 ... P00268 14747706
    200 1r6x:A (1.4) BS03 CO 2.7.7.4 GO:0000103 ... P08536 14983089
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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