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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2423 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 7wz0:A (3.0) BS05 CLR ? GO:0000166 ... Q4H132 35380894
    1202 7wz0:B (3.0) BS01 CLR ? GO:0001671 ... C4IX13 35380894
    1203 7wz0:C (3.0) BS04 CLR ? GO:0000166 ... Q4H132 35380894
    1204 7wz0:C (3.0) BS05 CLR ? GO:0000166 ... Q4H132 35380894
    1205 7wz0:D (3.0) BS01 CLR ? GO:0001671 ... C4IX13 35380894
    1206 7x21:A (2.8) BS03 CLR 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 36085139
    1207 7x21:B (2.8) BS01 CLR ? GO:0001666 ... P07340 36085139
    1208 7x22:A (3.0) BS03 CLR 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 36085139
    1209 7x22:B (3.0) BS01 CLR ? GO:0001666 ... P07340 36085139
    1210 7x24:A (3.4) BS01 CLR 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 36085139
    1211 7x24:A (3.4) BS02 CLR 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 36085139
    1212 7x24:B (3.4) BS01 CLR ? GO:0001666 ... P07340 36085139
    1213 7x2c:F (3.2) BS01 CLR ? GO:0001588 ... P21728 35676276
    1214 7x2d:F (3.3) BS01 CLR ? GO:0001588 ... P21728 35676276
    1215 7x2f:F (3.0) BS02 CLR ? GO:0001588 ... P21728 35676276
    1216 7xbw:R (2.8) BS01 CLR ? GO:0004930 ... P49238 35767622
    1217 7xbw:R (2.8) BS02 CLR ? GO:0004930 ... P49238 35767622
    1218 7xbw:R (2.8) BS03 CLR ? GO:0004930 ... P49238 35767622
    1219 7xbx:R (3.4) BS01 CLR ? GO:0004930 ... P49238
    P78423    		 35767622
    1220 7xbx:R (3.4) BS02 CLR ? GO:0004930 ... P49238
    P78423    		 35767622
    1221 7xem:A (3.17) BS01 CLR ? GO:0005216 ... Q9WTR1 36163384
    1222 7xem:B (3.17) BS01 CLR ? GO:0005216 ... Q9WTR1 36163384
    1223 7xem:C (3.17) BS01 CLR ? GO:0005216 ... Q9WTR1 36163384
    1224 7xem:D (3.17) BS01 CLR ? GO:0005216 ... Q9WTR1 36163384
    1225 7xer:A (2.47) BS01 CLR ? GO:0005216 ... Q9WTR1 36163384
    1226 7xer:B (2.47) BS01 CLR ? GO:0005216 ... Q9WTR1 36163384
    1227 7xer:C (2.47) BS01 CLR ? GO:0005216 ... Q9WTR1 36163384
    1228 7xer:D (2.47) BS01 CLR ? GO:0005216 ... Q9WTR1 36163384
    1229 7xeu:A (2.77) BS01 CLR ? GO:0005216 ... Q9WTR1 36163384
    1230 7xeu:B (2.77) BS01 CLR ? GO:0005216 ... Q9WTR1 36163384
    1231 7xeu:C (2.77) BS01 CLR ? GO:0005216 ... Q9WTR1 36163384
    1232 7xeu:D (2.77) BS01 CLR ? GO:0005216 ... Q9WTR1 36163384
    1233 7xt8:R (3.1) BS01 CLR ? GO:0004930 ... P0ABE7
    Q13639    		 35714614
    1234 7xt8:R (3.1) BS02 CLR ? GO:0004930 ... P0ABE7
    Q13639    		 35714614
    1235 7xt8:R (3.1) BS03 CLR ? GO:0004930 ... P0ABE7
    Q13639    		 35714614
    1236 7xt9:R (3.2) BS01 CLR ? GO:0004930 ... P0ABE7
    Q13639    		 35714614
    1237 7xt9:R (3.2) BS02 CLR ? GO:0004930 ... P0ABE7
    Q13639    		 35714614
    1238 7xt9:R (3.2) BS03 CLR ? GO:0004930 ... P0ABE7
    Q13639    		 35714614
    1239 7xtc:R (3.2) BS02 CLR ? GO:0004930 ... P0ABE7
    P34969    		 35714614
    1240 7xve:A (2.7) BS01 CLR ? GO:0001518 ... Q15858 35878056
    1241 7xve:A (2.7) BS12 CLR ? GO:0001518 ... Q15858 35878056
    1242 7xve:A (2.7) BS13 CLR ? GO:0001518 ... Q15858 35878056
    1243 7xve:A (2.7) BS14 CLR ? GO:0001518 ... Q15858 35878056
    1244 7xvf:A (2.8) BS02 CLR ? GO:0001518 ... Q15858 35878056
    1245 7xw5:R (2.96) BS02 CLR ? GO:0004930 ... P16473 35940204
    1246 7xw5:R (2.96) BS03 CLR ? GO:0004930 ... P16473 35940204
    1247 7xw5:R (2.96) BS04 CLR ? GO:0004930 ... P16473 35940204
    1248 7xw5:R (2.96) BS05 CLR ? GO:0004930 ... P16473 35940204
    1249 7xw5:R (2.96) BS06 CLR ? GO:0004930 ... P16473 35940204
    1250 7xw5:R (2.96) BS07 CLR ? GO:0004930 ... P16473 35940204
    1251 7xw5:R (2.96) BS08 CLR ? GO:0004930 ... P16473 35940204
    1252 7xw5:R (2.96) BS09 CLR ? GO:0004930 ... P16473 35940204
    1253 7xw6:R (2.78) BS01 CLR ? GO:0004930 ... P16473 35940204
    1254 7xw6:R (2.78) BS02 CLR ? GO:0004930 ... P16473 35940204
    1255 7xw6:R (2.78) BS03 CLR ? GO:0004930 ... P16473 35940204
    1256 7xw6:R (2.78) BS04 CLR ? GO:0004930 ... P16473 35940204
    1257 7xw6:R (2.78) BS05 CLR ? GO:0004930 ... P16473 35940204
    1258 7xw6:R (2.78) BS06 CLR ? GO:0004930 ... P16473 35940204
    1259 7xw6:R (2.78) BS07 CLR ? GO:0004930 ... P16473 35940204
    1260 7xw6:R (2.78) BS08 CLR ? GO:0004930 ... P16473 35940204
    1261 7xw6:R (2.78) BS09 CLR ? GO:0004930 ... P16473 35940204
    1262 7xzh:A (2.78) BS02 CLR ? GO:0001678 ... Q8IWT6 N/A
    1263 7xzh:A (2.78) BS03 CLR ? GO:0001678 ... Q8IWT6 N/A
    1264 7xzh:B (2.78) BS02 CLR ? GO:0001678 ... Q8IWT6 N/A
    1265 7xzh:B (2.78) BS03 CLR ? GO:0001678 ... Q8IWT6 N/A
    1266 7xzh:C (2.78) BS02 CLR ? GO:0001678 ... Q8IWT6 N/A
    1267 7xzh:D (2.78) BS03 CLR ? GO:0001678 ... Q8IWT6 N/A
    1268 7xzh:D (2.78) BS04 CLR ? GO:0001678 ... Q8IWT6 N/A
    1269 7xzh:E (2.78) BS03 CLR ? GO:0001678 ... Q8IWT6 N/A
    1270 7xzh:E (2.78) BS04 CLR ? GO:0001678 ... Q8IWT6 N/A
    1271 7xzh:F (2.78) BS03 CLR ? GO:0001678 ... Q8IWT6 N/A
    1272 7xzh:F (2.78) BS04 CLR ? GO:0001678 ... Q8IWT6 N/A
    1273 7y45:A (3.3) BS01 CLR ? GO:0000166 ... Q4H132 35747985
    1274 7y45:A (3.3) BS02 CLR ? GO:0000166 ... Q4H132 35747985
    1275 7y45:B (3.3) BS01 CLR ? GO:0001671 ... C4IX13 35747985
    1276 7y45:C (3.3) BS01 CLR ? GO:0000166 ... Q4H132 35747985
    1277 7y45:C (3.3) BS02 CLR ? GO:0000166 ... Q4H132 35747985
    1278 7y45:D (3.3) BS01 CLR ? GO:0001671 ... C4IX13 35747985
    1279 7y46:A (7.2) BS02 CLR ? GO:0000166 ... Q4H132 35747985
    1280 7y46:A (7.2) BS03 CLR ? GO:0000166 ... Q4H132 35747985
    1281 7y46:B (7.2) BS01 CLR ? GO:0001671 ... C4IX13 35747985
    1282 7y46:B (7.2) BS02 CLR ? GO:0001671 ... C4IX13 35747985
    1283 7y46:C (7.2) BS02 CLR ? GO:0000166 ... Q4H132 35747985
    1284 7y46:C (7.2) BS03 CLR ? GO:0000166 ... Q4H132 35747985
    1285 7y46:D (7.2) BS01 CLR ? GO:0001671 ... C4IX13 35747985
    1286 7y46:D (7.2) BS02 CLR ? GO:0001671 ... C4IX13 35747985
    1287 7y5t:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 36272978
    1288 7y5t:C (2.9) BS02 CLR ? GO:0000139 ... Q96BI3 36272978
    1289 7y5t:C (2.9) BS03 CLR ? GO:0000139 ... Q96BI3 36272978
    1290 7y5x:C (3.0) BS01 CLR ? GO:0000139 ... Q96BI3 36272978
    1291 7y5x:C (3.0) BS02 CLR ? GO:0000139 ... Q96BI3 36272978
    1292 7y5z:C (3.4) BS01 CLR ? GO:0000139 ... Q96BI3 36272978
    1293 7y5z:C (3.4) BS02 CLR ? GO:0000139 ... Q96BI3 36272978
    1294 7y5z:C (3.4) BS03 CLR ? GO:0000139 ... Q96BI3 36272978
    1295 7yae:E (3.37) BS02 CLR ? GO:0004930 ... P30874 36810324
    1296 7yfc:R (3.0) BS02 CLR ? GO:0004930 ... Q9H3N8 37863901
    1297 7yfd:R (3.1) BS02 CLR ? GO:0004930 ... Q9H3N8 37863901
    1298 7yfd:R (3.1) BS03 CLR ? GO:0004930 ... Q9H3N8 37863901
    1299 7ykd:A (2.81) BS02 CLR ? GO:0001501 ... Q99788 36881626
    1300 7ykd:A (2.81) BS03 CLR ? GO:0001501 ... Q99788 36881626
    1301 7ykd:A (2.81) BS04 CLR ? GO:0001501 ... Q99788 36881626
    1302 7ykd:A (2.81) BS05 CLR ? GO:0001501 ... Q99788 36881626
    1303 7zi0:A (3.0) BS02 CLR ? GO:0004888 ... P0ABE7
    Q99835    		 35658032
    1304 7zi0:B (3.0) BS02 CLR ? GO:0004888 ... P0ABE7
    Q99835    		 35658032
    1305 7zxn:A (3.06) BS01 CLR ? GO:0005243 ... P08034 37647412
    1306 7zxn:A (3.06) BS02 CLR ? GO:0005243 ... P08034 37647412
    1307 7zxn:B (3.06) BS01 CLR ? GO:0005243 ... P08034 37647412
    1308 7zxn:B (3.06) BS02 CLR ? GO:0005243 ... P08034 37647412
    1309 7zxn:C (3.06) BS01 CLR ? GO:0005243 ... P08034 37647412
    1310 7zxn:C (3.06) BS02 CLR ? GO:0005243 ... P08034 37647412
    1311 7zxn:D (3.06) BS01 CLR ? GO:0005243 ... P08034 37647412
    1312 7zxn:D (3.06) BS02 CLR ? GO:0005243 ... P08034 37647412
    1313 7zxn:E (3.06) BS01 CLR ? GO:0005243 ... P08034 37647412
    1314 7zxn:E (3.06) BS02 CLR ? GO:0005243 ... P08034 37647412
    1315 7zxn:F (3.06) BS01 CLR ? GO:0005243 ... P08034 37647412
    1316 7zxn:F (3.06) BS02 CLR ? GO:0005243 ... P08034 37647412
    1317 7zyi:A (2.88) BS01 CLR ? GO:0001618 ... Q14973 35726088
    1318 7zyi:A (2.88) BS04 CLR ? GO:0001618 ... Q14973 35726088
    1319 8a2o:A (3.45) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37791355
    1320 8a2o:A (3.45) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37791355
    1321 8a2p:A (3.5) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37791355
    1322 8a2p:A (3.5) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37791355
    1323 8a2p:A (3.5) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37791355
    1324 8bht:A (3.1) BS02 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 36580587
    1325 8bht:B (3.1) BS02 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 36580587
    1326 8bi0:A (3.2) BS02 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 36580587
    1327 8bi0:A (3.2) BS03 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 36580587
    1328 8bi0:B (3.2) BS02 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 36580587
    1329 8bi0:B (3.2) BS03 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 36580587
    1330 8bjf:A (3.0) BS01 CLR 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0001409 ... O15439 37683641
    1331 8bjf:A (3.0) BS05 CLR 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0001409 ... O15439 37683641
    1332 8c9w:A (2.114) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37264098
    1333 8c9w:A (2.114) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37264098
    1334 8c9w:A (2.114) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37264098
    1335 8cic:A (2.102) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37264098
    1336 8cic:A (2.102) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37264098
    1337 8cic:A (2.102) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37264098
    1338 8cic:A (2.102) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37264098
    1339 8crq:B (3.2) BS01 CLR ? GO:0016020 ... P02724 35835865
    1340 8crq:C (3.2) BS01 CLR ? GO:0005452 ... P02730 35835865
    1341 8crq:E (3.2) BS01 CLR ? GO:0005452 ... P02730 35835865
    1342 8crr:C (3.0) BS01 CLR ? GO:0005452 ... P02730 35835865
    1343 8crr:E (3.0) BS02 CLR ? GO:0005452 ... P02730 35835865
    1344 8crt:C (3.0) BS01 CLR ? GO:0005452 ... P02730 35835865
    1345 8crt:E (3.0) BS01 CLR ? GO:0005452 ... P02730 35835865
    1346 8cs9:L (2.74) BS01 CLR ? GO:0005515 ... Q02094 35835865
    1347 8cs9:L (2.74) BS02 CLR ? GO:0005515 ... Q02094 35835865
    1348 8cs9:R (2.74) BS01 CLR ? GO:0016020 ... P02724 35835865
    1349 8cs9:V (2.74) BS01 CLR ? GO:0005452 ... P02730 35835865
    1350 8cs9:Y (2.74) BS01 CLR ? GO:0005452 ... P02730 35835865
    1351 8cs9:Z (2.74) BS01 CLR ? GO:0005452 ... P02730 35835865
    1352 8cs9:b (2.74) BS01 CLR ? GO:0016020 ... P02724 35835865
    1353 8cs9:e (2.74) BS02 CLR ? GO:0005452 ... P02730 35835865
    1354 8cs9:f (2.74) BS02 CLR ? GO:0005452 ... P02730 35835865
    1355 8cs9:g (2.74) BS01 CLR ? GO:0005452 ... P02730 35835865
    1356 8csx:L (2.4) BS01 CLR ? GO:0005515 ... Q02094 35835865
    1357 8csx:L (2.4) BS02 CLR ? GO:0005515 ... Q02094 35835865
    1358 8ct2:A (3.1) BS01 CLR ? GO:0003091 ... P29972 35835865
    1359 8ct2:B (3.1) BS01 CLR ? GO:0003091 ... P29972 35835865
    1360 8ct2:C (3.1) BS01 CLR ? GO:0003091 ... P29972 35835865
    1361 8ct2:D (3.1) BS01 CLR ? GO:0003091 ... P29972 35835865
    1362 8ct3:C (3.3) BS01 CLR ? GO:0005452 ... P02730 35835865
    1363 8ct3:C (3.3) BS02 CLR ? GO:0005452 ... P02730 35835865
    1364 8ct3:E (3.3) BS02 CLR ? GO:0005452 ... P02730 35835865
    1365 8ct3:E (3.3) BS03 CLR ? GO:0005452 ... P02730 35835865
    1366 8cte:L (2.9) BS01 CLR ? GO:0005515 ... Q02094 35835865
    1367 8cte:L (2.9) BS02 CLR ? GO:0005515 ... Q02094 35835865
    1368 8cte:M (2.9) BS01 CLR ? GO:0003091 ... P29972 35835865
    1369 8cte:O (2.9) BS01 CLR ? GO:0003091 ... P29972 35835865
    1370 8cte:P (2.9) BS01 CLR ? GO:0005452 ... P02730 35835865
    1371 8cte:R (2.9) BS01 CLR ? GO:0003091 ... P29972 35835865
    1372 8cte:S (2.9) BS01 CLR ? GO:0003091 ... P29972 35835865
    1373 8cte:T (2.9) BS02 CLR ? GO:0005452 ... P02730 35835865
    1374 8cu6:A (2.8) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 35977382
    1375 8cu6:A (2.8) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 35977382
    1376 8cu6:A (2.8) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 35977382
    1377 8cu7:A (2.05) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 35977382
    1378 8cu7:A (2.05) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 35977382
    1379 8cub:A (4.05) BS01 CLR 7.6.2.- GO:0005515 ... Q9H222 35988751
    1380 8cub:C (4.05) BS01 CLR 7.6.2.- GO:0005515 ... Q9H222 35988751
    1381 8cxo:A (3.7) BS01 CLR ? GO:0004888 ... P56726
    Q9V2J8    		 35902590
    1382 8dpg:A (3.6) BS02 CLR ? GO:0004930 ... P28335 35977511
    1383 8dpi:A (3.4) BS02 CLR ? GO:0004930 ... P28335 35977511
    1384 8du3:A (2.5) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 35933788
    1385 8du3:A (2.5) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 35933788
    1386 8du3:A (2.5) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 35933788
    1387 8e0g:A (2.1) BS01 CLR ? GO:0004930 ... P42866 37817141
    1388 8ef5:M (3.3) BS02 CLR ? GO:0001965 ... P35372 36368306
    1389 8ef5:M (3.3) BS04 CLR ? GO:0001965 ... P35372 36368306
    1390 8ef5:M (3.3) BS05 CLR ? GO:0001965 ... P35372 36368306
    1391 8ef5:M (3.3) BS06 CLR ? GO:0001965 ... P35372 36368306
    1392 8ef5:M (3.3) BS07 CLR ? GO:0001965 ... P35372 36368306
    1393 8ef5:M (3.3) BS08 CLR ? GO:0001965 ... P35372 36368306
    1394 8ef5:R (3.3) BS02 CLR ? GO:0001965 ... P35372 36368306
    1395 8ef5:R (3.3) BS03 CLR ? GO:0001965 ... P35372 36368306
    1396 8ef5:R (3.3) BS04 CLR ? GO:0001965 ... P35372 36368306
    1397 8ef6:M (3.2) BS02 CLR ? GO:0001965 ... P35372 36368306
    1398 8ef6:M (3.2) BS04 CLR ? GO:0001965 ... P35372 36368306
    1399 8ef6:M (3.2) BS05 CLR ? GO:0001965 ... P35372 36368306
    1400 8ef6:M (3.2) BS06 CLR ? GO:0001965 ... P35372 36368306
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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