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BioLiP
Download all results in tab-seperated text for 2423 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1lri:A (1.45) BS01 CLR ? GO:0001907 ... P15570 12198300
    2 1n83:A (1.63) BS01 CLR ? GO:0003677 ... P35398 12467577
    3 1zhy:A (1.6) BS01 CLR ? GO:0000139 ... P35844 16136145 MOAD: Kd=300nM
    PDBbind: -logKd/Ki=6.52, Kd=300nM
    4 2rh1:A (2.4) BS04 CLR ?
    3.2.1.17    		 GO:0003796 ... P00720
    P07550    		 17962520
    5 2rh1:A (2.4) BS05 CLR ?
    3.2.1.17    		 GO:0003796 ... P00720
    P07550    		 17962520
    6 2zxe:A (2.4) BS06 CLR ? GO:0000166 ... Q4H132 19458722
    7 3a3y:A (2.8) BS07 CLR ? GO:0000166 ... Q4H132 19666591
    8 3am6:A (3.2) BS02 CLR ? GO:0005216 ... G1K3Q0 21726566
    9 3am6:A (3.2) BS03 CLR ? GO:0005216 ... G1K3Q0 21726566
    10 3am6:B (3.2) BS02 CLR ? GO:0005216 ... G1K3Q0 21726566
    11 3am6:B (3.2) BS03 CLR ? GO:0005216 ... G1K3Q0 21726566
    12 3am6:C (3.2) BS02 CLR ? GO:0005216 ... G1K3Q0 21726566
    13 3am6:C (3.2) BS03 CLR ? GO:0005216 ... G1K3Q0 21726566
    14 3am6:D (3.2) BS02 CLR ? GO:0005216 ... G1K3Q0 21726566
    15 3am6:D (3.2) BS03 CLR ? GO:0005216 ... G1K3Q0 21726566
    16 3d4s:A (2.8) BS02 CLR ?
    3.2.1.17    		 GO:0003796 ... P00720
    P07550    		 18547522
    17 3d4s:A (2.8) BS03 CLR ?
    3.2.1.17    		 GO:0003796 ... P00720
    P07550    		 18547522
    18 3gki:A (1.8) BS01 CLR ? N/A O15118 19563754
    19 3jd8:A (4.43) BS01 CLR ? GO:0005319 ... O15118 N/A
    20 3k2s:A (-1.00) BS01 CLR ? GO:0001540 ... P02647 19812036
    21 3k2s:B (-1.00) BS01 CLR ? GO:0001540 ... P02647 19812036
    22 3kdp:B (3.5) BS01 CLR ? GO:0001671 ... P05027 18075585
    23 3kdp:D (3.5) BS01 CLR ? GO:0001671 ... P05027 18075585
    24 3n9y:A (2.1) BS02 CLR 1.14.15.6 GO:0004497 ... P05108 21636783
    25 3n9y:B (2.1) BS02 CLR 1.14.15.6 GO:0004497 ... P05108 21636783
    26 3ny8:A (2.84) BS01 CLR ?
    3.2.1.17    		 GO:0003796 ... P00720
    P07550    		 20669948
    27 3ny8:A (2.84) BS02 CLR ?
    3.2.1.17    		 GO:0003796 ... P00720
    P07550    		 20669948
    28 3ny9:A (2.84) BS01 CLR ?
    3.2.1.17    		 GO:0003796 ... P00720
    P07550    		 20669948
    29 3ny9:A (2.84) BS02 CLR ?
    3.2.1.17    		 GO:0003796 ... P00720
    P07550    		 20669948
    30 3nya:A (3.16) BS01 CLR ?
    3.2.1.17    		 GO:0003796 ... P00720
    P07550    		 20669948
    31 3pds:A (3.5) BS02 CLR 3.2.1.17 GO:0003796 ... P00720
    P07550    		 21228876
    32 3wgu:A (2.8) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 N/A
    33 3wgu:A (2.8) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 N/A
    34 3wgu:A (2.8) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 N/A
    35 3wgu:C (2.8) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 N/A
    36 3wgu:C (2.8) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 N/A
    37 3wgu:E (2.8) BS01 CLR ? GO:0001671 ... Q58K79 N/A
    38 3wgu:G (2.8) BS01 CLR ? GO:0001671 ... Q58K79 N/A
    39 3wgv:A (2.8) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 N/A
    40 3wgv:A (2.8) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 N/A
    41 3wgv:A (2.8) BS07 CLR 7.2.2.13 GO:0000166 ... P05024 N/A
    42 3wgv:B (2.8) BS01 CLR ? GO:0001671 ... P05027 N/A
    43 3wgv:C (2.8) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 N/A
    44 3wgv:C (2.8) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 N/A
    45 3wgv:D (2.8) BS01 CLR ? GO:0001671 ... P05027 N/A
    46 3wgv:E (2.8) BS01 CLR ? GO:0001671 ... Q58K79 N/A
    47 3wgv:G (2.8) BS01 CLR ? GO:0001671 ... Q58K79 N/A
    48 4boe:A (2.24) BS01 CLR ? GO:0005576 ... M1MR49 29167574
    49 4bqu:A (2.36) BS01 CLR ? GO:0005576 ... M1MR49 29167574
    50 4bqu:B (2.36) BS01 CLR ? GO:0005576 ... M1MR49 29167574
    51 4dkl:A (2.8) BS02 CLR 3.2.1.17 GO:0003796 ... P00720
    P42866    		 22437502
    52 4eiy:A (1.8) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 22798613
    53 4eiy:A (1.8) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 22798613
    54 4eiy:A (1.8) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274    		 22798613
    55 4hqj:A (4.3) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 24051246
    56 4hqj:A (4.3) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 24051246
    57 4hqj:B (4.3) BS02 CLR ? GO:0001671 ... P05027 24051246
    58 4hqj:C (4.3) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 24051246
    59 4hqj:C (4.3) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 24051246
    60 4hyt:A (3.404) BS08 CLR 7.2.2.13 GO:0000166 ... P05024 23776223
    61 4hyt:C (3.404) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 23776223
    62 4hyt:C (3.404) BS07 CLR 7.2.2.13 GO:0000166 ... P05024 23776223
    63 4hyt:D (3.404) BS01 CLR ? GO:0001671 ... P05027 23776223
    64 4hyt:E (3.404) BS01 CLR ? GO:0001671 ... Q58K79 23776223
    65 4hyt:G (3.404) BS01 CLR ? GO:0001671 ... Q58K79 23776223
    66 4ib4:A (2.7) BS02 CLR ? GO:0004930 ... P0ABE7
    P41595    		 23519215
    67 4m48:A (2.955) BS04 CLR ? GO:0016020 ... Q7K4Y6 24037379
    68 4nc3:A (2.8) BS02 CLR ? GO:0004930 ... P0ABE7
    P41595    		 24357322
    69 4ntj:A (2.62) BS02 CLR ? GO:0004930 ... P0ABE7
    Q9H244    		 24670650
    70 4ntj:A (2.62) BS03 CLR ? GO:0004930 ... P0ABE7
    Q9H244    		 24670650
    71 4or2:A (2.8) BS02 CLR ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    72 4or2:A (2.8) BS03 CLR ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    73 4or2:A (2.8) BS04 CLR ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    74 4or2:A (2.8) BS05 CLR ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    75 4or2:B (2.8) BS01 CLR ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    76 4or2:B (2.8) BS03 CLR ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    77 4or2:B (2.8) BS04 CLR ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    78 4pxz:A (2.5) BS02 CLR ? GO:0004930 ... P0ABE7
    Q9H244    		 24784220
    79 4res:A (3.408) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 25624492
    80 4res:C (3.408) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 25624492
    81 4res:E (3.408) BS01 CLR ? GO:0001671 ... Q58K79 25624492
    82 4res:G (3.408) BS01 CLR ? GO:0001671 ... Q58K79 25624492
    83 4ret:A (4.0) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 25624492
    84 4ret:A (4.0) BS10 CLR 7.2.2.13 GO:0000166 ... P05024 25624492
    85 4ret:C (4.0) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 25624492
    86 4ret:C (4.0) BS07 CLR 7.2.2.13 GO:0000166 ... P05024 25624492
    87 4ret:E (4.0) BS01 CLR ? GO:0001671 ... Q58K79 25624492
    88 4ret:G (4.0) BS01 CLR ? GO:0001671 ... Q58K79 25624492
    89 4xe5:A (3.901) BS04 CLR 7.2.2.13 GO:0000166 ... Q08DA1 27050261
    90 4xe5:A (3.901) BS05 CLR 7.2.2.13 GO:0000166 ... Q08DA1 27050261
    91 4xe5:B (3.901) BS01 CLR ? GO:0001671 ... G3MWR4 27050261
    92 4xe5:G (3.901) BS01 CLR ? GO:0006811 ... Q04645 27050261
    93 4xnu:A (2.98) BS01 CLR ? GO:0016020 ... Q7K4Y6 25961798
    94 4xnx:A (3.0) BS02 CLR ? GO:0016020 ... Q7K4Y6 25961798
    95 4xnx:A (3.0) BS03 CLR ? GO:0016020 ... Q7K4Y6 25961798
    96 4xp1:A (2.89) BS07 CLR ? GO:0016020 ... Q7K4Y6 25970245
    97 4xp5:A (3.3) BS04 CLR ? GO:0016020 ... Q7K4Y6 25970245
    98 4xp5:A (3.3) BS05 CLR ? GO:0016020 ... Q7K4Y6 25970245
    99 4xp6:A (3.1) BS06 CLR ? GO:0016020 ... Q7K4Y6 25970245
    100 4xpa:A (2.95) BS02 CLR ? GO:0016020 ... Q7K4Y6 25970245
    101 4xpa:A (2.95) BS03 CLR ? GO:0016020 ... Q7K4Y6 25970245
    102 4xpb:A (3.05) BS04 CLR ? GO:0016020 ... Q7K4Y6 25970245
    103 4xpb:A (3.05) BS05 CLR ? GO:0016020 ... Q7K4Y6 25970245
    104 4xpf:A (3.273) BS03 CLR ? GO:0016020 ... Q7K4Y6 25970245
    105 4xpg:A (3.21) BS02 CLR ? GO:0016020 ... Q7K4Y6 25970245
    106 4xph:A (2.9) BS06 CLR ? GO:0016020 ... Q7K4Y6 25970245
    107 4xph:A (2.9) BS07 CLR ? GO:0016020 ... Q7K4Y6 25970245
    108 4xpt:A (3.36) BS05 CLR ? GO:0016020 ... Q7K4Y6 25970245
    109 4xt1:A (2.886) BS01 CLR ? GO:0004930 ... P69332 25745166
    110 5avq:A (2.6) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    111 5avr:A (2.7) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    112 5avs:A (2.9) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    113 5avt:A (2.9) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    114 5avu:A (2.55) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    115 5avv:A (2.9) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    116 5avw:A (2.6) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    117 5avx:A (3.3) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    118 5avy:A (3.45) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    119 5avz:A (3.2) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    120 5avz:B (3.2) BS01 CLR ? GO:0001671 ... C4IX13 26258479
    121 5aw0:A (3.3) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    122 5aw1:A (3.35) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    123 5aw2:A (3.2) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    124 5aw3:A (3.35) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    125 5aw3:B (3.35) BS01 CLR ? GO:0001671 ... C4IX13 26258479
    126 5aw4:A (2.8) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    127 5aw5:A (2.9) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    128 5aw6:A (2.8) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    129 5aw7:A (2.9) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    130 5aw8:A (2.8) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    131 5c1m:A (2.07) BS01 CLR ? GO:0004930 ... P42866 26245379
    132 5d5a:A (2.4826) BS04 CLR 3.2.1.17 GO:0003796 ... P00720
    P07550    		 26894538
    133 5d5a:A (2.4826) BS05 CLR 3.2.1.17 GO:0003796 ... P00720
    P07550    		 26894538
    134 5d5b:A (3.8) BS04 CLR 3.2.1.17 GO:0003796 ... P00720
    P07550    		 26894538
    135 5d6l:A (3.2) BS04 CLR 3.2.1.17 GO:0003796 ... P00720
    P07550    		 28771236
    136 5i71:A (3.15) BS02 CLR ? GO:0016020 ... P31645 27049939
    137 5i73:A (3.24) BS02 CLR ? GO:0016020 ... P31645 27049939
    138 5i74:A (3.395) BS02 CLR ? GO:0016020 ... P31645 27049939
    139 5i75:A (3.49) BS02 CLR ? GO:0016020 ... P31645 27049939
    140 5iu4:A (1.72) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    141 5iu4:A (1.72) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    142 5iu4:A (1.72) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    143 5iu4:A (1.72) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    144 5iu7:A (1.9) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    145 5iu7:A (1.9) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    146 5iu7:A (1.9) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    147 5iu7:A (1.9) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    148 5iu8:A (2.002) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    149 5iu8:A (2.002) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    150 5iu8:A (2.002) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    151 5iu8:A (2.002) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    152 5iua:A (2.2) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    153 5iua:A (2.2) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    154 5iua:A (2.2) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    155 5iua:A (2.2) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    156 5iub:A (2.1) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    157 5iub:A (2.1) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    158 5iub:A (2.1) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27312113
    159 5jtb:A (2.8) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28508075
    160 5jtb:A (2.8) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28508075
    161 5jtb:A (2.8) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28508075
    162 5k2a:A (2.5) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27679816
    163 5k2a:A (2.5) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27679816
    164 5k2a:A (2.5) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27679816
    165 5k2b:A (2.5) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27679816
    166 5k2b:A (2.5) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27679816
    167 5k2b:A (2.5) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27679816
    168 5k2c:A (1.9) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27679816
    169 5k2c:A (1.9) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27679816
    170 5k2d:A (1.9) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27679816
    171 5k2d:A (1.9) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 27679816
    172 5l7d:A (3.2) BS01 CLR ? GO:0004888 ... P0ABE7
    Q99835    		 27437577
    173 5mzj:A (2.0) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28712806
    174 5mzj:A (2.0) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28712806
    175 5mzj:A (2.0) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28712806
    176 5mzp:A (2.1) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28712806
    177 5mzp:A (2.1) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28712806
    178 5mzp:A (2.1) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28712806
    179 5n2r:A (2.8) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28712806
    180 5n2r:A (2.8) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28712806
    181 5n2r:A (2.8) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28712806
    182 5nlx:A (2.14) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28912485
    183 5nm2:A (1.948) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28912485
    184 5nm2:A (1.948) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28912485
    185 5nm2:A (1.948) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28912485
    186 5nm4:A (1.7) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28912485
    187 5nm4:A (1.7) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28912485
    188 5olg:A (1.87) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    189 5olg:A (1.87) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    190 5olg:A (1.87) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    191 5olh:A (2.6) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    192 5olh:A (2.6) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    193 5olh:A (2.6) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    194 5olo:A (3.1) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    195 5olo:A (3.1) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    196 5olo:A (3.1) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    197 5olv:A (1.998) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    198 5olv:A (1.998) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    199 5olv:A (1.998) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    200 5olv:A (1.998) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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