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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ilx:C (3.8) BS01 CLA N/A N/A N/A 11459991
    2 1ilx:L (3.8) BS01 CLA N/A N/A N/A 11459991
    3 1izl:A (3.7) BS01 CLA 1.10.3.9 GO:0005506 ... P51765 12518057
    4 1izl:A (3.7) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 12518057
    5 1izl:B (3.7) BS01 CLA ? GO:0009521 ... Q8DIQ1 12518057
    6 1izl:B (3.7) BS02 CLA ? GO:0009521 ... Q8DIQ1 12518057
    7 1izl:B (3.7) BS03 CLA ? GO:0009521 ... Q8DIQ1 12518057
    8 1izl:B (3.7) BS04 CLA ? GO:0009521 ... Q8DIQ1 12518057
    9 1izl:B (3.7) BS05 CLA ? GO:0009521 ... Q8DIQ1 12518057
    10 1izl:B (3.7) BS06 CLA ? GO:0009521 ... Q8DIQ1 12518057
    11 1izl:B (3.7) BS07 CLA ? GO:0009521 ... Q8DIQ1 12518057
    12 1izl:B (3.7) BS08 CLA ? GO:0009521 ... Q8DIQ1 12518057
    13 1izl:B (3.7) BS09 CLA ? GO:0009521 ... Q8DIQ1 12518057
    14 1izl:C (3.7) BS02 CLA ? GO:0005737 ... Q8DIF8 12518057
    15 1izl:C (3.7) BS03 CLA ? GO:0005737 ... Q8DIF8 12518057
    16 1izl:C (3.7) BS04 CLA ? GO:0005737 ... Q8DIF8 12518057
    17 1izl:C (3.7) BS05 CLA ? GO:0005737 ... Q8DIF8 12518057
    18 1izl:C (3.7) BS06 CLA ? GO:0005737 ... Q8DIF8 12518057
    19 1izl:C (3.7) BS07 CLA ? GO:0005737 ... Q8DIF8 12518057
    20 1izl:C (3.7) BS08 CLA ? GO:0005737 ... Q8DIF8 12518057
    21 1izl:C (3.7) BS09 CLA ? GO:0005737 ... Q8DIF8 12518057
    22 1izl:C (3.7) BS10 CLA ? GO:0005737 ... Q8DIF8 12518057
    23 1izl:C (3.7) BS11 CLA ? GO:0005737 ... Q8DIF8 12518057
    24 1izl:D (3.7) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    25 1izl:J (3.7) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 12518057
    26 1izl:J (3.7) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 12518057
    27 1izl:L (3.7) BS01 CLA ? GO:0009521 ... Q8DIQ1 12518057
    28 1izl:L (3.7) BS02 CLA ? GO:0009521 ... Q8DIQ1 12518057
    29 1izl:L (3.7) BS03 CLA ? GO:0009521 ... Q8DIQ1 12518057
    30 1izl:L (3.7) BS04 CLA ? GO:0009521 ... Q8DIQ1 12518057
    31 1izl:L (3.7) BS05 CLA ? GO:0009521 ... Q8DIQ1 12518057
    32 1izl:L (3.7) BS06 CLA ? GO:0009521 ... Q8DIQ1 12518057
    33 1izl:L (3.7) BS07 CLA ? GO:0009521 ... Q8DIQ1 12518057
    34 1izl:L (3.7) BS08 CLA ? GO:0009521 ... Q8DIQ1 12518057
    35 1izl:L (3.7) BS09 CLA ? GO:0009521 ... Q8DIQ1 12518057
    36 1izl:L (3.7) BS10 CLA ? GO:0009521 ... Q8DIQ1 12518057
    37 1izl:M (3.7) BS02 CLA ? GO:0005737 ... Q8DIF8 12518057
    38 1izl:M (3.7) BS03 CLA ? GO:0005737 ... Q8DIF8 12518057
    39 1izl:M (3.7) BS04 CLA ? GO:0005737 ... Q8DIF8 12518057
    40 1izl:M (3.7) BS05 CLA ? GO:0005737 ... Q8DIF8 12518057
    41 1izl:M (3.7) BS06 CLA ? GO:0005737 ... Q8DIF8 12518057
    42 1izl:M (3.7) BS07 CLA ? GO:0005737 ... Q8DIF8 12518057
    43 1izl:M (3.7) BS08 CLA ? GO:0005737 ... Q8DIF8 12518057
    44 1izl:M (3.7) BS09 CLA ? GO:0005737 ... Q8DIF8 12518057
    45 1izl:M (3.7) BS10 CLA ? GO:0005737 ... Q8DIF8 12518057
    46 1izl:N (3.7) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    47 1izl:N (3.7) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    48 1jb0:A (2.5) BS01 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    49 1jb0:A (2.5) BS02 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    50 1jb0:A (2.5) BS03 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    51 1jb0:A (2.5) BS04 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    52 1jb0:A (2.5) BS05 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    53 1jb0:A (2.5) BS06 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    54 1jb0:A (2.5) BS07 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    55 1jb0:A (2.5) BS08 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    56 1jb0:A (2.5) BS09 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    57 1jb0:A (2.5) BS10 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    58 1jb0:A (2.5) BS11 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    59 1jb0:A (2.5) BS12 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    60 1jb0:A (2.5) BS13 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    61 1jb0:A (2.5) BS14 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    62 1jb0:A (2.5) BS15 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    63 1jb0:A (2.5) BS16 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    64 1jb0:A (2.5) BS17 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    65 1jb0:A (2.5) BS18 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    66 1jb0:A (2.5) BS19 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    67 1jb0:A (2.5) BS20 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    68 1jb0:A (2.5) BS21 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    69 1jb0:A (2.5) BS22 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    70 1jb0:A (2.5) BS23 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    71 1jb0:A (2.5) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    72 1jb0:A (2.5) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    73 1jb0:A (2.5) BS26 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    74 1jb0:A (2.5) BS27 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    75 1jb0:A (2.5) BS28 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    76 1jb0:A (2.5) BS29 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    77 1jb0:A (2.5) BS30 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    78 1jb0:A (2.5) BS31 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    79 1jb0:A (2.5) BS32 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    80 1jb0:A (2.5) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    81 1jb0:A (2.5) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    82 1jb0:A (2.5) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    83 1jb0:A (2.5) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    84 1jb0:A (2.5) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    85 1jb0:A (2.5) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    86 1jb0:A (2.5) BS39 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    87 1jb0:A (2.5) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    88 1jb0:A (2.5) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    89 1jb0:A (2.5) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    90 1jb0:A (2.5) BS43 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    91 1jb0:A (2.5) BS44 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    92 1jb0:A (2.5) BS45 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    93 1jb0:A (2.5) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    94 1jb0:A (2.5) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    95 1jb0:A (2.5) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    96 1jb0:A (2.5) BS51 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    97 1jb0:A (2.5) BS52 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    98 1jb0:B (2.5) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    99 1jb0:B (2.5) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    100 1jb0:B (2.5) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    101 1jb0:B (2.5) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    102 1jb0:B (2.5) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    103 1jb0:B (2.5) BS07 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    104 1jb0:B (2.5) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    105 1jb0:B (2.5) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    106 1jb0:B (2.5) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    107 1jb0:B (2.5) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    108 1jb0:B (2.5) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    109 1jb0:B (2.5) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    110 1jb0:B (2.5) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    111 1jb0:B (2.5) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    112 1jb0:B (2.5) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    113 1jb0:B (2.5) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    114 1jb0:B (2.5) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    115 1jb0:B (2.5) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    116 1jb0:B (2.5) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    117 1jb0:B (2.5) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    118 1jb0:B (2.5) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    119 1jb0:B (2.5) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    120 1jb0:B (2.5) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    121 1jb0:B (2.5) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    122 1jb0:B (2.5) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    123 1jb0:B (2.5) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    124 1jb0:B (2.5) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    125 1jb0:B (2.5) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    126 1jb0:B (2.5) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    127 1jb0:B (2.5) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    128 1jb0:B (2.5) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    129 1jb0:B (2.5) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    130 1jb0:B (2.5) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    131 1jb0:B (2.5) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    132 1jb0:B (2.5) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    133 1jb0:B (2.5) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    134 1jb0:B (2.5) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    135 1jb0:B (2.5) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    136 1jb0:B (2.5) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    137 1jb0:B (2.5) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    138 1jb0:B (2.5) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    139 1jb0:B (2.5) BS44 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    140 1jb0:B (2.5) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    141 1jb0:B (2.5) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    142 1jb0:B (2.5) BS47 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    143 1jb0:B (2.5) BS48 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    144 1jb0:F (2.5) BS01 CLA ? GO:0009522 ... P0A401 11418848
    145 1jb0:F (2.5) BS02 CLA ? GO:0009522 ... P0A401 11418848
    146 1jb0:F (2.5) BS03 CLA ? GO:0009522 ... P0A401 11418848
    147 1jb0:F (2.5) BS04 CLA ? GO:0009522 ... P0A401 11418848
    148 1jb0:I (2.5) BS01 CLA ? GO:0009522 ... P0A427 11418848
    149 1jb0:I (2.5) BS02 CLA ? GO:0009522 ... P0A427 11418848
    150 1jb0:I (2.5) BS03 CLA ? GO:0009522 ... P0A427 11418848
    151 1jb0:I (2.5) BS04 CLA ? GO:0009522 ... P0A427 11418848
    152 1jb0:J (2.5) BS01 CLA ? GO:0009522 ... P0A429 11418848
    153 1jb0:J (2.5) BS02 CLA ? GO:0009522 ... P0A429 11418848
    154 1jb0:J (2.5) BS03 CLA ? GO:0009522 ... P0A429 11418848
    155 1jb0:J (2.5) BS04 CLA ? GO:0009522 ... P0A429 11418848
    156 1jb0:J (2.5) BS05 CLA ? GO:0009522 ... P0A429 11418848
    157 1jb0:J (2.5) BS06 CLA ? GO:0009522 ... P0A429 11418848
    158 1jb0:K (2.5) BS01 CLA ? GO:0009522 ... P0A425 11418848
    159 1jb0:L (2.5) BS01 CLA ? GO:0009522 ... Q8DGB4 11418848
    160 1jb0:L (2.5) BS02 CLA ? GO:0009522 ... Q8DGB4 11418848
    161 1jb0:L (2.5) BS03 CLA ? GO:0009522 ... Q8DGB4 11418848
    162 1jb0:L (2.5) BS05 CLA ? GO:0009522 ... Q8DGB4 11418848
    163 1jb0:L (2.5) BS06 CLA ? GO:0009522 ... Q8DGB4 11418848
    164 1jb0:L (2.5) BS07 CLA ? GO:0009522 ... Q8DGB4 11418848
    165 1jb0:M (2.5) BS01 CLA ? GO:0009522 ... P0A403 11418848
    166 1jb0:M (2.5) BS02 CLA ? GO:0009522 ... P0A403 11418848
    167 1ppr:M (2.0) BS01 CLA ? GO:0016168 ... P80484 8650577
    168 1ppr:M (2.0) BS02 CLA ? GO:0016168 ... P80484 8650577
    169 1ppr:N (2.0) BS01 CLA ? GO:0016168 ... P80484 8650577
    170 1ppr:N (2.0) BS02 CLA ? GO:0016168 ... P80484 8650577
    171 1ppr:O (2.0) BS01 CLA ? GO:0016168 ... P80484 8650577
    172 1ppr:O (2.0) BS02 CLA ? GO:0016168 ... P80484 8650577
    173 1q90:B (3.1) BS05 CLA ? GO:0009055 ... Q00471 14647374
    174 1q90:D (3.1) BS02 CLA ? GO:0005739 ... P23230 14647374
    175 1rwt:A (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    176 1rwt:A (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    177 1rwt:A (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    178 1rwt:A (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    179 1rwt:A (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    180 1rwt:A (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    181 1rwt:A (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    182 1rwt:A (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    183 1rwt:B (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    184 1rwt:B (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    185 1rwt:B (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    186 1rwt:B (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    187 1rwt:B (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    188 1rwt:B (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    189 1rwt:B (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    190 1rwt:B (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    191 1rwt:B (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    192 1rwt:C (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    193 1rwt:C (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    194 1rwt:C (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    195 1rwt:C (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    196 1rwt:C (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    197 1rwt:C (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    198 1rwt:C (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    199 1rwt:C (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    200 1rwt:D (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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