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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 190 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4kt0:A (2.8) BS03 CL0 1.97.1.12 GO:0000287 ... P29254 24473073
    2 4kt0:A (2.8) BS13 CL0 1.97.1.12 GO:0000287 ... P29254 24473073
    3 4kt0:B (2.8) BS02 CL0 1.97.1.12 GO:0000287 ... P29255 24473073
    4 4rku:A (3.0) BS44 CL0 1.97.1.12 GO:0000287 ... P05310 N/A
    5 4rku:B (3.0) BS05 CL0 1.97.1.12 GO:0000287 ... P05311 N/A
    6 4y28:A (2.8) BS01 CL0 1.97.1.12 GO:0000287 ... P05310 26076232
    7 4y28:B (2.8) BS02 CL0 1.97.1.12 GO:0000287 ... P05311 26076232
    8 5l8r:A (2.6) BS01 CL0 1.97.1.12 GO:0000287 ... P05310 28248295
    9 5l8r:B (2.6) BS01 CL0 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    10 5zgb:A (3.63) BS01 CL0 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    11 5zgh:A (3.82) BS01 CL0 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    12 5zji:A (3.3) BS01 CL0 1.97.1.12 GO:0000287 ... P04966 29880686
    13 5zji:B (3.3) BS01 CL0 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    14 6jeo:aA (3.3) BS01 CL0 1.97.1.12 GO:0000287 ... P58576 31666526
    15 6jeo:aB (3.3) BS02 CL0 1.97.1.12 GO:0000287 ... P58565 31666526
    16 6jeo:bA (3.3) BS01 CL0 1.97.1.12 GO:0000287 ... P58576 31666526
    17 6jeo:cA (3.3) BS01 CL0 1.97.1.12 GO:0000287 ... P58576 31666526
    18 6jeo:cB (3.3) BS02 CL0 1.97.1.12 GO:0000287 ... P58565 31666526
    19 6jeo:dA (3.3) BS01 CL0 1.97.1.12 GO:0000287 ... P58576 31666526
    20 6jo5:A (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 31182847
    21 6jo5:B (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P09144 31182847
    22 6jo6:A (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 31182847
    23 6jo6:B (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P09144 31182847
    24 6k33:aA (2.74) BS01 CL0 1.97.1.12 GO:0000287 ... P25936 32393811
    25 6k33:bA (2.74) BS01 CL0 1.97.1.12 GO:0000287 ... P25936 32393811
    26 6k33:cA (2.74) BS01 CL0 1.97.1.12 GO:0000287 ... P25936 32393811
    27 6k61:A (2.37) BS01 CL0 1.97.1.12 GO:0000287 ... P58576 31595062
    28 6k61:B (2.37) BS01 CL0 1.97.1.12 GO:0000287 ... P58565 31595062
    29 6k61:a (2.37) BS01 CL0 1.97.1.12 GO:0000287 ... P58576 31595062
    30 6k61:b (2.37) BS01 CL0 1.97.1.12 GO:0000287 ... P58565 31595062
    31 6kmw:aA (2.35) BS01 CL0 1.97.1.12 GO:0000287 ... A0A1Z3HRW4 31932639
    32 6kmw:aB (2.35) BS01 CL0 1.97.1.12 GO:0000287 ... A0A1Z3HRY4 31932639
    33 6kmw:bA (2.35) BS01 CL0 1.97.1.12 GO:0000287 ... A0A1Z3HRW4 31932639
    34 6kmw:bB (2.35) BS01 CL0 1.97.1.12 GO:0000287 ... A0A1Z3HRY4 31932639
    35 6kmw:cA (2.35) BS01 CL0 1.97.1.12 GO:0000287 ... A0A1Z3HRW4 31932639
    36 6kmw:cB (2.35) BS03 CL0 1.97.1.12 GO:0000287 ... A0A1Z3HRY4 31932639
    37 6kmx:aA (2.41) BS01 CL0 1.97.1.12 GO:0000287 ... A0A1Z3HIN6 31932639
    38 6kmx:aB (2.41) BS01 CL0 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    39 6kmx:bA (2.41) BS01 CL0 1.97.1.12 GO:0000287 ... A0A1Z3HIN6 31932639
    40 6kmx:bB (2.41) BS01 CL0 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    41 6kmx:cA (2.41) BS01 CL0 1.97.1.12 GO:0000287 ... A0A1Z3HIN6 31932639
    42 6kmx:cB (2.41) BS01 CL0 1.97.1.12 GO:0000287 ... A0A1Z3HIL0 31932639
    43 6l4u:A (2.4) BS01 CL0 N/A GO:0009579 ... N/A N/A
    44 6l4u:B (2.4) BS01 CL0 N/A GO:0009522 ... N/A N/A
    45 6nwa:A (3.48) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 31133699
    46 6nwa:H (3.48) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 31133699
    47 6nwa:a (3.48) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 31133699
    48 6pfy:A (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 31685819
    49 6pfy:B (2.9) BS02 CL0 1.97.1.12 GO:0000287 ... P0A407 31685819
    50 6pfy:G (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 31685819
    51 6pfy:Y (2.9) BS04 CL0 1.97.1.12 GO:0000287 ... P0A405 31685819
    52 6pfy:Z (2.9) BS03 CL0 1.97.1.12 GO:0000287 ... P0A407 31685819
    53 6pgk:A (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 31685819
    54 6pgk:B (2.9) BS02 CL0 1.97.1.12 GO:0000287 ... P0A407 31685819
    55 6pgk:G (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 31685819
    56 6pgk:Y (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 31685819
    57 6pnj:A (3.19) BS01 CL0 1.97.1.12 GO:0000287 ... G6FME9 N/A
    58 6pnj:B (3.19) BS02 CL0 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    59 6pnj:G (3.19) BS01 CL0 1.97.1.12 GO:0000287 ... G6FME9 N/A
    60 6pnj:H (3.19) BS02 CL0 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    61 6pnj:a (3.19) BS01 CL0 1.97.1.12 GO:0000287 ... G6FME9 N/A
    62 6pnj:b (3.19) BS02 CL0 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    63 6qph:A (3.4) BS01 CL0 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    64 6rhz:A (3.2) BS01 CL0 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    65 6sl5:A (2.84) BS01 CL0 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    66 6sl5:B (2.84) BS01 CL0 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    67 6tcl:A (3.2) BS03 CL0 1.97.1.12 GO:0000287 ... P58576 32170279
    68 6tcl:A1 (3.2) BS02 CL0 1.97.1.12 GO:0000287 ... P58576 32170279
    69 6tcl:A2 (3.2) BS02 CL0 1.97.1.12 GO:0000287 ... P58576 32170279
    70 6tcl:AA (3.2) BS03 CL0 1.97.1.12 GO:0000287 ... P58576 32170279
    71 6tcl:B (3.2) BS02 CL0 1.97.1.12 GO:0000287 ... P58565 32170279
    72 6tcl:B1 (3.2) BS02 CL0 1.97.1.12 GO:0000287 ... P58565 32170279
    73 6tcl:B2 (3.2) BS02 CL0 1.97.1.12 GO:0000287 ... P58565 32170279
    74 6tcl:BB (3.2) BS02 CL0 1.97.1.12 GO:0000287 ... P58565 32170279
    75 6tra:A (2.85) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 N/A
    76 6trc:1 (2.98) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 N/A
    77 6trc:A (2.98) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 N/A
    78 6trc:a (2.98) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 N/A
    79 6trd:1 (3.16) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 N/A
    80 6trd:A (3.16) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 N/A
    81 6trd:a (3.16) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 N/A
    82 6uzv:1 (3.1) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 33077842
    83 6uzv:2 (3.1) BS02 CL0 1.97.1.12 GO:0009522 ... P29255 33077842
    84 6uzv:A (3.1) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 33077842
    85 6uzv:B (3.1) BS01 CL0 1.97.1.12 GO:0009522 ... P29255 33077842
    86 6uzv:a (3.1) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 33077842
    87 6uzv:b (3.1) BS01 CL0 1.97.1.12 GO:0009522 ... P29255 33077842
    88 6vpv:1 (2.7) BS01 CL0 1.97.1.12 GO:0000287 ... K9Z0B2 34435952
    89 6vpv:2 (2.7) BS01 CL0 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    90 6vpv:A (2.7) BS01 CL0 1.97.1.12 GO:0000287 ... K9Z0B2 34435952
    91 6vpv:B (2.7) BS01 CL0 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    92 6vpv:a (2.7) BS01 CL0 1.97.1.12 GO:0000287 ... K9Z0B2 34435952
    93 6vpv:b (2.7) BS01 CL0 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    94 6yac:A (2.5) BS01 CL0 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    95 6yez:A (2.7) BS01 CL0 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    96 6yez:B (2.7) BS01 CL0 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    97 6yxr:A (3.4) BS01 CL0 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    98 6zoo:A (2.74) BS01 CL0 1.97.1.12 GO:0000287 ... A0A0F6NFW5 34085703
    99 6zoo:B (2.74) BS01 CL0 1.97.1.12 GO:0000287 ... A0A0F6NGI2 34085703
    100 6zxs:A (3.0) BS01 CL0 1.97.1.12 GO:0000287 ... A0A0F6NFW5 N/A
    101 6zxs:B (3.0) BS01 CL0 1.97.1.12 GO:0000287 ... A0A0F6NGI2 N/A
    102 6zzx:A (2.7) BS01 CL0 1.97.1.12 GO:0000287 ... W8SY74 34462576
    103 6zzx:B (2.7) BS01 CL0 1.97.1.12 GO:0000287 ... W8SUA3 34462576
    104 6zzy:A (3.16) BS01 CL0 1.97.1.12 GO:0000287 ... W8SY74 34462576
    105 6zzy:B (3.16) BS01 CL0 1.97.1.12 GO:0000287 ... W8SUA3 34462576
    106 7a4p:A (4.2) BS01 CL0 1.97.1.12 GO:0000287 ... W8SY74 34462576
    107 7a4p:B (4.2) BS01 CL0 1.97.1.12 GO:0000287 ... W8SUA3 34462576
    108 7bgi:A (2.54) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 N/A
    109 7bgi:B (2.54) BS01 CL0 1.97.1.12 GO:0000287 ... P09144 N/A
    110 7blx:A (3.15) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 N/A
    111 7blz:A (3.1) BS02 CL0 1.97.1.12 GO:0000287 ... Q85FY7 N/A
    112 7blz:B (3.1) BS02 CL0 1.97.1.12 GO:0000287 ... Q85FY6 N/A
    113 7dr0:A (3.3) BS01 CL0 1.97.1.12 GO:0000287 ... P48112 N/A
    114 7dr0:B (3.3) BS02 CL0 1.97.1.12 GO:0000287 ... P48113 N/A
    115 7dr1:A (3.2) BS01 CL0 1.97.1.12 GO:0000287 ... P48112 N/A
    116 7dr1:B (3.2) BS02 CL0 1.97.1.12 GO:0000287 ... P48113 N/A
    117 7dr2:aA (3.8) BS01 CL0 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    118 7dr2:aB (3.8) BS02 CL0 1.97.1.12 GO:0000287 ... P48113 N/A
    119 7dr2:bA (3.8) BS01 CL0 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    120 7dr2:cA (3.8) BS01 CL0 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    121 7dr2:cB (3.8) BS02 CL0 1.97.1.12 GO:0000287 ... P48113 N/A
    122 7dr2:dA (3.8) BS01 CL0 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    123 7ew6:A (3.4) BS01 CL0 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    124 7ewk:A (3.88) BS01 CL0 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    125 7f4v:aA (2.04) BS01 CL0 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    126 7f4v:bA (2.04) BS02 CL0 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    127 7f4v:cA (2.04) BS02 CL0 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    128 7f9o:A (4.5) BS01 CL0 1.97.1.12 GO:0000287 ... S4Z1K7 34879391
    129 7f9o:e (4.5) BS01 CL0 1.97.1.12 GO:0000287 ... S4Z1K7 34879391
    130 7fix:A1 (1.97) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 36097054
    131 7fix:A2 (1.97) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 36097054
    132 7fix:A3 (1.97) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 36097054
    133 7fix:B1 (1.97) BS02 CL0 1.97.1.12 GO:0000287 ... P0A407 36097054
    134 7fix:B2 (1.97) BS02 CL0 1.97.1.12 GO:0000287 ... P0A407 36097054
    135 7fix:B3 (1.97) BS02 CL0 1.97.1.12 GO:0000287 ... P0A407 36097054
    136 7ksq:A (2.8) BS01 CL0 1.97.1.12 GO:0000287 ... Q8MFA3 35190662
    137 7ksq:B (2.8) BS01 CL0 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    138 7kux:A (2.8) BS01 CL0 1.97.1.12 GO:0000287 ... Q8MFA3 35190662
    139 7kux:B (2.8) BS01 CL0 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    140 7lx0:A (2.96) BS01 CL0 1.97.1.12 GO:0000287 ... G6FME9 N/A
    141 7lx0:B (2.96) BS02 CL0 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    142 7lx0:G (2.96) BS01 CL0 1.97.1.12 GO:0000287 ... G6FME9 N/A
    143 7lx0:H (2.96) BS02 CL0 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    144 7lx0:a (2.96) BS01 CL0 1.97.1.12 GO:0000287 ... G6FME9 N/A
    145 7lx0:b (2.96) BS02 CL0 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    146 7m75:A (2.75) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 34750381
    147 7m76:A (3.0) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 34750381
    148 7m76:B (3.0) BS02 CL0 1.97.1.12 GO:0000287 ... P0A407 34750381
    149 7m78:A (3.0) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 34750381
    150 7r3k:A (2.52) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 36979472
    151 7r3k:B (2.52) BS01 CL0 1.97.1.12 GO:0000287 ... P09144 36979472
    152 7s3d:A (2.91) BS01 CL0 1.97.1.12 GO:0000287 ... B4WP20 34793839
    153 7s3d:B (2.91) BS01 CL0 1.97.1.12 GO:0000287 ... B4WP21 34793839
    154 7s3d:G (2.91) BS02 CL0 1.97.1.12 GO:0000287 ... B4WP20 34793839
    155 7s3d:H (2.91) BS01 CL0 1.97.1.12 GO:0000287 ... B4WP21 34793839
    156 7s3d:a (2.91) BS02 CL0 1.97.1.12 GO:0000287 ... B4WP20 34793839
    157 7s3d:b (2.91) BS01 CL0 1.97.1.12 GO:0000287 ... B4WP21 34793839
    158 7umh:A (2.6) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 37532717
    159 7umh:B (2.6) BS01 CL0 1.97.1.12 GO:0000287 ... P29255 37532717
    160 7umh:G (2.6) BS43 CL0 1.97.1.12 GO:0000287 ... P29255 37532717
    161 7umh:H (2.6) BS06 CL0 1.97.1.12 GO:0000287 ... P29254 37532717
    162 7umh:a (2.6) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 37532717
    163 7wyi:A (3.9) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 37270022
    164 7wzn:A (4.9) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 37270022
    165 7y3f:A (2.62) BS01 CL0 1.97.1.12 GO:0000287 ... P58576 36805598
    166 7y3f:B (2.62) BS02 CL0 1.97.1.12 GO:0000287 ... P58565 36805598
    167 7yca:A (2.94) BS01 CL0 1.97.1.12 GO:0000287 ... Q0P3K1 36951548
    168 7yca:B (2.94) BS01 CL0 1.97.1.12 GO:0000287 ... Q0P3K2 36951548
    169 7zq9:A (2.74) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 36229605
    170 7zqc:A (2.31) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 36229605
    171 7zqd:A (2.97) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 36229605
    172 7zqd:A2 (2.97) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 36229605
    173 7zqd:B (2.97) BS01 CL0 1.97.1.12 GO:0000287 ... P09144 36229605
    174 7zqd:B2 (2.97) BS01 CL0 1.97.1.12 GO:0000287 ... P09144 36229605
    175 8am5:a (3.1) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 37542031
    176 8asl:a (3.15) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 37542031
    177 8asl:b (3.15) BS01 CL0 1.97.1.12 GO:0000287 ... P29255 37542031
    178 8asp:a (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 37542031
    179 8asp:b (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P29255 37542031
    180 8bcv:A (2.2) BS01 CL0 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    181 8bcv:H (2.2) BS01 CL0 N/A GO:0009522 ... N/A N/A
    182 8bcw:A (2.11) BS01 CL0 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    183 8bcw:H (2.11) BS01 CL0 N/A GO:0009522 ... N/A N/A
    184 8cmo:A (2.81) BS01 CL0 N/A GO:0009579 ... N/A N/A
    185 8cmo:B (2.81) BS01 CL0 N/A GO:0009522 ... N/A N/A
    186 8j6z:A (2.79) BS27 CL0 1.97.1.12 GO:0000287 ... P56766 37936349
    187 8j7a:A (3.06) BS02 CL0 1.97.1.12 GO:0000287 ... P56766 37936349
    188 8j7b:A (3.22) BS10 CL0 1.97.1.12 GO:0000287 ... P56766 37936349
    189 8wey:A (1.92) BS01 CL0 N/A GO:0009579 ... N/A 38442179
    190 8wey:B (1.92) BS02 CL0 N/A GO:0009522 ... N/A 38442179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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