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BioLiP
Download all results in tab-seperated text for 3339 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3201 8iwy:Y (2.68) BS01 CHL ? GO:0009765 ... P12333 37653340
    3202 8iwy:Y (2.68) BS05 CHL ? GO:0009765 ... P12333 37653340
    3203 8iwy:Y (2.68) BS06 CHL ? GO:0009765 ... P12333 37653340
    3204 8iwy:Y (2.68) BS07 CHL ? GO:0009765 ... P12333 37653340
    3205 8iwy:Y (2.68) BS08 CHL ? GO:0009765 ... P12333 37653340
    3206 8iwy:Y (2.68) BS09 CHL ? GO:0009765 ... P12333 37653340
    3207 8iwz:G (2.52) BS01 CHL ? GO:0009765 ... P12333 37653340
    3208 8iwz:G (2.52) BS04 CHL ? GO:0009765 ... P12333 37653340
    3209 8iwz:G (2.52) BS05 CHL ? GO:0009765 ... P12333 37653340
    3210 8iwz:G (2.52) BS06 CHL ? GO:0009765 ... P12333 37653340
    3211 8iwz:G (2.52) BS07 CHL ? GO:0009765 ... P12333 37653340
    3212 8iwz:G (2.52) BS08 CHL ? GO:0009765 ... P12333 37653340
    3213 8iwz:G (2.52) BS14 CHL ? GO:0009765 ... P12333 37653340
    3214 8iwz:N (2.52) BS01 CHL ? GO:0009765 ... P12333 37653340
    3215 8iwz:N (2.52) BS04 CHL ? GO:0009765 ... P12333 37653340
    3216 8iwz:N (2.52) BS05 CHL ? GO:0009765 ... P12333 37653340
    3217 8iwz:N (2.52) BS06 CHL ? GO:0009765 ... P12333 37653340
    3218 8iwz:N (2.52) BS07 CHL ? GO:0009765 ... P12333 37653340
    3219 8iwz:N (2.52) BS08 CHL ? GO:0009765 ... P12333 37653340
    3220 8iwz:Y (2.52) BS01 CHL ? GO:0009765 ... P12333 37653340
    3221 8iwz:Y (2.52) BS02 CHL ? GO:0009765 ... P12333 37653340
    3222 8iwz:Y (2.52) BS03 CHL ? GO:0009765 ... P12333 37653340
    3223 8iwz:Y (2.52) BS07 CHL ? GO:0009765 ... P12333 37653340
    3224 8iwz:Y (2.52) BS08 CHL ? GO:0009765 ... P12333 37653340
    3225 8iwz:Y (2.52) BS09 CHL ? GO:0009765 ... P12333 37653340
    3226 8iwz:Y (2.52) BS10 CHL ? GO:0009765 ... P12333 37653340
    3227 8iwz:Y (2.52) BS11 CHL ? GO:0009765 ... P12333 37653340
    3228 8ix0:G (2.64) BS01 CHL ? GO:0009765 ... P12333 37653340
    3229 8ix0:G (2.64) BS03 CHL ? GO:0009765 ... P12333 37653340
    3230 8ix0:G (2.64) BS04 CHL ? GO:0009765 ... P12333 37653340
    3231 8ix0:G (2.64) BS05 CHL ? GO:0009765 ... P12333 37653340
    3232 8ix0:N (2.64) BS01 CHL ? GO:0009765 ... P12333 37653340
    3233 8ix0:N (2.64) BS03 CHL ? GO:0009765 ... P12333 37653340
    3234 8ix0:N (2.64) BS04 CHL ? GO:0009765 ... P12333 37653340
    3235 8ix0:N (2.64) BS05 CHL ? GO:0009765 ... P12333 37653340
    3236 8ix0:N (2.64) BS06 CHL ? GO:0009765 ... P12333 37653340
    3237 8ix0:Y (2.64) BS01 CHL ? GO:0009765 ... P12333 37653340
    3238 8ix0:Y (2.64) BS04 CHL ? GO:0009765 ... P12333 37653340
    3239 8ix0:Y (2.64) BS05 CHL ? GO:0009765 ... P12333 37653340
    3240 8ix0:Y (2.64) BS06 CHL ? GO:0009765 ... P12333 37653340
    3241 8ix1:G (2.63) BS01 CHL ? GO:0009765 ... P12333 37653340
    3242 8ix1:G (2.63) BS04 CHL ? GO:0009765 ... P12333 37653340
    3243 8ix1:G (2.63) BS05 CHL ? GO:0009765 ... P12333 37653340
    3244 8ix1:G (2.63) BS06 CHL ? GO:0009765 ... P12333 37653340
    3245 8ix1:G (2.63) BS07 CHL ? GO:0009765 ... P12333 37653340
    3246 8ix1:N (2.63) BS01 CHL ? GO:0009765 ... P12333 37653340
    3247 8ix1:N (2.63) BS04 CHL ? GO:0009765 ... P12333 37653340
    3248 8ix1:N (2.63) BS05 CHL ? GO:0009765 ... P12333 37653340
    3249 8ix1:N (2.63) BS06 CHL ? GO:0009765 ... P12333 37653340
    3250 8ix1:N (2.63) BS07 CHL ? GO:0009765 ... P12333 37653340
    3251 8ix1:N (2.63) BS08 CHL ? GO:0009765 ... P12333 37653340
    3252 8ix1:Y (2.63) BS01 CHL ? GO:0009765 ... P12333 37653340
    3253 8ix1:Y (2.63) BS04 CHL ? GO:0009765 ... P12333 37653340
    3254 8ix1:Y (2.63) BS05 CHL ? GO:0009765 ... P12333 37653340
    3255 8ix1:Y (2.63) BS06 CHL ? GO:0009765 ... P12333 37653340
    3256 8ix1:Y (2.63) BS07 CHL ? GO:0009765 ... P12333 37653340
    3257 8ix2:G (2.8) BS02 CHL ? GO:0009765 ... P12333 37653340
    3258 8ix2:G (2.8) BS03 CHL ? GO:0009765 ... P12333 37653340
    3259 8ix2:G (2.8) BS04 CHL ? GO:0009765 ... P12333 37653340
    3260 8ix2:G (2.8) BS05 CHL ? GO:0009765 ... P12333 37653340
    3261 8ix2:N (2.8) BS02 CHL ? GO:0009765 ... P12333 37653340
    3262 8ix2:N (2.8) BS03 CHL ? GO:0009765 ... P12333 37653340
    3263 8ix2:N (2.8) BS04 CHL ? GO:0009765 ... P12333 37653340
    3264 8ix2:Y (2.8) BS03 CHL ? GO:0009765 ... P12333 37653340
    3265 8ix2:Y (2.8) BS04 CHL ? GO:0009765 ... P12333 37653340
    3266 8ix2:Y (2.8) BS05 CHL ? GO:0009765 ... P12333 37653340
    3267 8j6z:1 (2.79) BS01 CHL ? GO:0003729 ... Q01667 37936349
    3268 8j6z:2 (2.79) BS04 CHL ? GO:0005515 ... Q9SYW8 37936349
    3269 8j6z:2 (2.79) BS05 CHL ? GO:0005515 ... Q9SYW8 37936349
    3270 8j6z:2 (2.79) BS06 CHL ? GO:0005515 ... Q9SYW8 37936349
    3271 8j6z:2 (2.79) BS08 CHL ? GO:0005515 ... Q9SYW8 37936349
    3272 8j6z:2 (2.79) BS11 CHL ? GO:0005515 ... Q9SYW8 37936349
    3273 8j6z:3 (2.79) BS06 CHL ? GO:0003729 ... Q9SY97 37936349
    3274 8j6z:4 (2.79) BS01 CHL ? GO:0003729 ... P27521 37936349
    3275 8j6z:4 (2.79) BS02 CHL ? GO:0003729 ... P27521 37936349
    3276 8j6z:4 (2.79) BS03 CHL ? GO:0003729 ... P27521 37936349
    3277 8j6z:4 (2.79) BS07 CHL ? GO:0003729 ... P27521 37936349
    3278 8j6z:4 (2.79) BS15 CHL ? GO:0003729 ... P27521 37936349
    3279 8j6z:O (2.79) BS04 CHL ? GO:0003729 ... Q949Q5 37936349
    3280 8j6z:x (2.79) BS01 CHL ? GO:0003729 ... P0CJ48 37936349
    3281 8j6z:x (2.79) BS02 CHL ? GO:0003729 ... P0CJ48 37936349
    3282 8j6z:x (2.79) BS04 CHL ? GO:0003729 ... P0CJ48 37936349
    3283 8j6z:x (2.79) BS07 CHL ? GO:0003729 ... P0CJ48 37936349
    3284 8j6z:x (2.79) BS09 CHL ? GO:0003729 ... P0CJ48 37936349
    3285 8j6z:x (2.79) BS14 CHL ? GO:0003729 ... P0CJ48 37936349
    3286 8j6z:y (2.79) BS03 CHL ? GO:0003729 ... P0CJ48 37936349
    3287 8j6z:y (2.79) BS05 CHL ? GO:0003729 ... P0CJ48 37936349
    3288 8j6z:y (2.79) BS06 CHL ? GO:0003729 ... P0CJ48 37936349
    3289 8j6z:y (2.79) BS10 CHL ? GO:0003729 ... P0CJ48 37936349
    3290 8j6z:y (2.79) BS12 CHL ? GO:0003729 ... P0CJ48 37936349
    3291 8j6z:y (2.79) BS13 CHL ? GO:0003729 ... P0CJ48 37936349
    3292 8j6z:y (2.79) BS15 CHL ? GO:0003729 ... P0CJ48 37936349
    3293 8j6z:y (2.79) BS16 CHL ? GO:0003729 ... P0CJ48 37936349
    3294 8j6z:z (2.79) BS01 CHL ? GO:0005739 ... Q9SHR7 37936349
    3295 8j6z:z (2.79) BS07 CHL ? GO:0005739 ... Q9SHR7 37936349
    3296 8j6z:z (2.79) BS08 CHL ? GO:0005739 ... Q9SHR7 37936349
    3297 8j6z:z (2.79) BS09 CHL ? GO:0005739 ... Q9SHR7 37936349
    3298 8j6z:z (2.79) BS10 CHL ? GO:0005739 ... Q9SHR7 37936349
    3299 8j6z:z (2.79) BS13 CHL ? GO:0005739 ... Q9SHR7 37936349
    3300 8j6z:z (2.79) BS14 CHL ? GO:0005739 ... Q9SHR7 37936349
    3301 8j7a:1 (3.06) BS01 CHL ? GO:0003729 ... Q01667 37936349
    3302 8j7a:2 (3.06) BS01 CHL ? GO:0005515 ... Q9SYW8 37936349
    3303 8j7a:2 (3.06) BS04 CHL ? GO:0005515 ... Q9SYW8 37936349
    3304 8j7a:2 (3.06) BS05 CHL ? GO:0005515 ... Q9SYW8 37936349
    3305 8j7a:2 (3.06) BS08 CHL ? GO:0005515 ... Q9SYW8 37936349
    3306 8j7a:2 (3.06) BS10 CHL ? GO:0005515 ... Q9SYW8 37936349
    3307 8j7a:3 (3.06) BS02 CHL ? GO:0003729 ... Q9SY97 37936349
    3308 8j7a:3 (3.06) BS10 CHL ? GO:0003729 ... Q9SY97 37936349
    3309 8j7a:4 (3.06) BS02 CHL ? GO:0003729 ... P27521 37936349
    3310 8j7a:4 (3.06) BS05 CHL ? GO:0003729 ... P27521 37936349
    3311 8j7a:4 (3.06) BS06 CHL ? GO:0003729 ... P27521 37936349
    3312 8j7a:4 (3.06) BS10 CHL ? GO:0003729 ... P27521 37936349
    3313 8j7b:1 (3.22) BS01 CHL ? GO:0003729 ... Q01667 37936349
    3314 8j7b:2 (3.22) BS01 CHL ? GO:0005515 ... Q9SYW8 37936349
    3315 8j7b:2 (3.22) BS02 CHL ? GO:0005515 ... Q9SYW8 37936349
    3316 8j7b:2 (3.22) BS04 CHL ? GO:0005515 ... Q9SYW8 37936349
    3317 8j7b:2 (3.22) BS06 CHL ? GO:0005515 ... Q9SYW8 37936349
    3318 8j7b:2 (3.22) BS09 CHL ? GO:0005515 ... Q9SYW8 37936349
    3319 8j7b:3 (3.22) BS01 CHL ? GO:0003729 ... Q9SY97 37936349
    3320 8j7b:3 (3.22) BS04 CHL ? GO:0003729 ... Q9SY97 37936349
    3321 8j7b:4 (3.22) BS01 CHL ? GO:0003729 ... P27521 37936349
    3322 8j7b:4 (3.22) BS02 CHL ? GO:0003729 ... P27521 37936349
    3323 8j7b:4 (3.22) BS05 CHL ? GO:0003729 ... P27521 37936349
    3324 8j7b:4 (3.22) BS07 CHL ? GO:0003729 ... P27521 37936349
    3325 8j7b:4 (3.22) BS09 CHL ? GO:0003729 ... P27521 37936349
    3326 8wgh:1 (2.4) BS01 CHL N/A N/A N/A 39060282
    3327 8wgh:1 (2.4) BS06 CHL N/A N/A N/A 39060282
    3328 8wgh:2 (2.4) BS01 CHL N/A N/A N/A 39060282
    3329 8wgh:2 (2.4) BS05 CHL N/A N/A N/A 39060282
    3330 8wgh:2 (2.4) BS06 CHL N/A N/A N/A 39060282
    3331 8wgh:2 (2.4) BS07 CHL N/A N/A N/A 39060282
    3332 8wgh:2 (2.4) BS14 CHL N/A N/A N/A 39060282
    3333 8wgh:3 (2.4) BS01 CHL N/A N/A N/A 39060282
    3334 8wgh:3 (2.4) BS07 CHL N/A N/A N/A 39060282
    3335 8wgh:4 (2.4) BS01 CHL N/A N/A N/A 39060282
    3336 8wgh:4 (2.4) BS07 CHL N/A N/A N/A 39060282
    3337 8wgh:4 (2.4) BS08 CHL N/A N/A N/A 39060282
    3338 8wgh:4 (2.4) BS09 CHL N/A N/A N/A 39060282
    3339 8wgh:4 (2.4) BS17 CHL N/A N/A N/A 39060282
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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