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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 3339 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 7dz8:X (3.16) BS05 CHL ? GO:0009416 ... Q93WE0 34239095
    1602 7dz8:X (3.16) BS06 CHL ? GO:0009416 ... Q93WE0 34239095
    1603 7dz8:X (3.16) BS07 CHL ? GO:0009416 ... Q93WE0 34239095
    1604 7dz8:X (3.16) BS08 CHL ? GO:0009416 ... Q93WE0 34239095
    1605 7dz8:X (3.16) BS09 CHL ? GO:0009416 ... Q93WE0 34239095
    1606 7dz8:X (3.16) BS15 CHL ? GO:0009416 ... Q93WE0 34239095
    1607 7dz8:X (3.16) BS16 CHL ? GO:0009416 ... Q93WE0 34239095
    1608 7dz8:Y (3.16) BS02 CHL ? GO:0009416 ... Q93WL4 34239095
    1609 7dz8:Y (3.16) BS03 CHL ? GO:0009416 ... Q93WL4 34239095
    1610 7dz8:Y (3.16) BS04 CHL ? GO:0009416 ... Q93WL4 34239095
    1611 7dz8:Y (3.16) BS08 CHL ? GO:0009416 ... Q93WL4 34239095
    1612 7dz8:Y (3.16) BS09 CHL ? GO:0009416 ... Q93WL4 34239095
    1613 7dz8:Y (3.16) BS10 CHL ? GO:0009416 ... Q93WL4 34239095
    1614 7dz8:Y (3.16) BS11 CHL ? GO:0009416 ... Q93WL4 34239095
    1615 7dz8:Y (3.16) BS12 CHL ? GO:0009416 ... Q93WL4 34239095
    1616 7dz8:Z (3.16) BS01 CHL ? GO:0009416 ... Q93WL4 34239095
    1617 7dz8:Z (3.16) BS02 CHL ? GO:0009416 ... Q93WL4 34239095
    1618 7dz8:Z (3.16) BS03 CHL ? GO:0009416 ... Q93WL4 34239095
    1619 7dz8:Z (3.16) BS07 CHL ? GO:0009416 ... Q93WL4 34239095
    1620 7dz8:Z (3.16) BS08 CHL ? GO:0009416 ... Q93WL4 34239095
    1621 7dz8:Z (3.16) BS09 CHL ? GO:0009416 ... Q93WL4 34239095
    1622 7dz8:Z (3.16) BS10 CHL ? GO:0009416 ... Q93WL4 34239095
    1623 7dz8:Z (3.16) BS11 CHL ? GO:0009416 ... Q93WL4 34239095
    1624 7e0h:X (3.75) BS01 CHL ? GO:0009416 ... Q93WE0 34239095
    1625 7e0h:X (3.75) BS05 CHL ? GO:0009416 ... Q93WE0 34239095
    1626 7e0h:X (3.75) BS06 CHL ? GO:0009416 ... Q93WE0 34239095
    1627 7e0h:X (3.75) BS07 CHL ? GO:0009416 ... Q93WE0 34239095
    1628 7e0h:X (3.75) BS08 CHL ? GO:0009416 ... Q93WE0 34239095
    1629 7e0h:X (3.75) BS09 CHL ? GO:0009416 ... Q93WE0 34239095
    1630 7e0h:X (3.75) BS15 CHL ? GO:0009416 ... Q93WE0 34239095
    1631 7e0h:X (3.75) BS16 CHL ? GO:0009416 ... Q93WE0 34239095
    1632 7e0h:Y (3.75) BS02 CHL ? GO:0009416 ... Q93WL4 34239095
    1633 7e0h:Y (3.75) BS03 CHL ? GO:0009416 ... Q93WL4 34239095
    1634 7e0h:Y (3.75) BS04 CHL ? GO:0009416 ... Q93WL4 34239095
    1635 7e0h:Y (3.75) BS08 CHL ? GO:0009416 ... Q93WL4 34239095
    1636 7e0h:Y (3.75) BS09 CHL ? GO:0009416 ... Q93WL4 34239095
    1637 7e0h:Y (3.75) BS10 CHL ? GO:0009416 ... Q93WL4 34239095
    1638 7e0h:Y (3.75) BS11 CHL ? GO:0009416 ... Q93WL4 34239095
    1639 7e0h:Y (3.75) BS12 CHL ? GO:0009416 ... Q93WL4 34239095
    1640 7e0h:Z (3.75) BS01 CHL ? GO:0009416 ... Q93WL4 34239095
    1641 7e0h:Z (3.75) BS02 CHL ? GO:0009416 ... Q93WL4 34239095
    1642 7e0h:Z (3.75) BS03 CHL ? GO:0009416 ... Q93WL4 34239095
    1643 7e0h:Z (3.75) BS07 CHL ? GO:0009416 ... Q93WL4 34239095
    1644 7e0h:Z (3.75) BS08 CHL ? GO:0009416 ... Q93WL4 34239095
    1645 7e0h:Z (3.75) BS09 CHL ? GO:0009416 ... Q93WL4 34239095
    1646 7e0h:Z (3.75) BS10 CHL ? GO:0009416 ... Q93WL4 34239095
    1647 7e0h:Z (3.75) BS11 CHL ? GO:0009416 ... Q93WL4 34239095
    1648 7e0i:U (3.53) BS01 CHL ? GO:0009416 ... Q93WL4 34239095
    1649 7e0i:U (3.53) BS05 CHL ? GO:0009416 ... Q93WL4 34239095
    1650 7e0i:U (3.53) BS06 CHL ? GO:0009416 ... Q93WL4 34239095
    1651 7e0i:U (3.53) BS07 CHL ? GO:0009416 ... Q93WL4 34239095
    1652 7e0i:U (3.53) BS08 CHL ? GO:0009416 ... Q93WL4 34239095
    1653 7e0i:U (3.53) BS09 CHL ? GO:0009416 ... Q93WL4 34239095
    1654 7e0i:U (3.53) BS15 CHL ? GO:0009416 ... Q93WL4 34239095
    1655 7e0i:U (3.53) BS16 CHL ? GO:0009416 ... Q93WL4 34239095
    1656 7e0i:V (3.53) BS01 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1657 7e0i:V (3.53) BS02 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1658 7e0i:V (3.53) BS03 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1659 7e0i:V (3.53) BS07 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1660 7e0i:V (3.53) BS08 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1661 7e0i:V (3.53) BS09 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1662 7e0i:V (3.53) BS10 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1663 7e0i:V (3.53) BS11 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1664 7e0i:W (3.53) BS01 CHL ? GO:0009416 ... Q93WE0 34239095
    1665 7e0i:W (3.53) BS02 CHL ? GO:0009416 ... Q93WE0 34239095
    1666 7e0i:W (3.53) BS06 CHL ? GO:0009416 ... Q93WE0 34239095
    1667 7e0i:W (3.53) BS07 CHL ? GO:0009416 ... Q93WE0 34239095
    1668 7e0i:W (3.53) BS08 CHL ? GO:0009416 ... Q93WE0 34239095
    1669 7e0i:W (3.53) BS09 CHL ? GO:0009416 ... Q93WE0 34239095
    1670 7e0i:W (3.53) BS10 CHL ? GO:0009416 ... Q93WE0 34239095
    1671 7e0j:X (3.13) BS01 CHL ? GO:0009416 ... Q93WE0 34239095
    1672 7e0j:X (3.13) BS05 CHL ? GO:0009416 ... Q93WE0 34239095
    1673 7e0j:X (3.13) BS06 CHL ? GO:0009416 ... Q93WE0 34239095
    1674 7e0j:X (3.13) BS07 CHL ? GO:0009416 ... Q93WE0 34239095
    1675 7e0j:X (3.13) BS08 CHL ? GO:0009416 ... Q93WE0 34239095
    1676 7e0j:X (3.13) BS14 CHL ? GO:0009416 ... Q93WE0 34239095
    1677 7e0j:X (3.13) BS16 CHL ? GO:0009416 ... Q93WE0 34239095
    1678 7e0j:X (3.13) BS17 CHL ? GO:0009416 ... Q93WE0 34239095
    1679 7e0j:Y (3.13) BS01 CHL ? GO:0009416 ... Q93WL4 34239095
    1680 7e0j:Y (3.13) BS02 CHL ? GO:0009416 ... Q93WL4 34239095
    1681 7e0j:Y (3.13) BS03 CHL ? GO:0009416 ... Q93WL4 34239095
    1682 7e0j:Y (3.13) BS07 CHL ? GO:0009416 ... Q93WL4 34239095
    1683 7e0j:Y (3.13) BS08 CHL ? GO:0009416 ... Q93WL4 34239095
    1684 7e0j:Y (3.13) BS09 CHL ? GO:0009416 ... Q93WL4 34239095
    1685 7e0j:Y (3.13) BS10 CHL ? GO:0009416 ... Q93WL4 34239095
    1686 7e0j:Y (3.13) BS11 CHL ? GO:0009416 ... Q93WL4 34239095
    1687 7e0j:Z (3.13) BS01 CHL ? GO:0009416 ... Q93VE0 34239095
    1688 7e0j:Z (3.13) BS02 CHL ? GO:0009416 ... Q93VE0 34239095
    1689 7e0j:Z (3.13) BS03 CHL ? GO:0009416 ... Q93VE0 34239095
    1690 7e0j:Z (3.13) BS07 CHL ? GO:0009416 ... Q93VE0 34239095
    1691 7e0j:Z (3.13) BS08 CHL ? GO:0009416 ... Q93VE0 34239095
    1692 7e0j:Z (3.13) BS09 CHL ? GO:0009416 ... Q93VE0 34239095
    1693 7e0j:Z (3.13) BS10 CHL ? GO:0009416 ... Q93VE0 34239095
    1694 7e0j:Z (3.13) BS11 CHL ? GO:0009416 ... Q93VE0 34239095
    1695 7e0k:U (3.09) BS01 CHL ? GO:0009416 ... Q93WL4 34239095
    1696 7e0k:U (3.09) BS05 CHL ? GO:0009416 ... Q93WL4 34239095
    1697 7e0k:U (3.09) BS06 CHL ? GO:0009416 ... Q93WL4 34239095
    1698 7e0k:U (3.09) BS07 CHL ? GO:0009416 ... Q93WL4 34239095
    1699 7e0k:U (3.09) BS08 CHL ? GO:0009416 ... Q93WL4 34239095
    1700 7e0k:U (3.09) BS09 CHL ? GO:0009416 ... Q93WL4 34239095
    1701 7e0k:U (3.09) BS15 CHL ? GO:0009416 ... Q93WL4 34239095
    1702 7e0k:U (3.09) BS16 CHL ? GO:0009416 ... Q93WL4 34239095
    1703 7e0k:V (3.09) BS01 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1704 7e0k:V (3.09) BS02 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1705 7e0k:V (3.09) BS03 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1706 7e0k:V (3.09) BS06 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1707 7e0k:V (3.09) BS07 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1708 7e0k:V (3.09) BS08 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1709 7e0k:V (3.09) BS09 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1710 7e0k:V (3.09) BS10 CHL ? GO:0009416 ... Q9ZSJ4 34239095
    1711 7e0k:W (3.09) BS01 CHL ? GO:0009416 ... Q93WE0 34239095
    1712 7e0k:W (3.09) BS02 CHL ? GO:0009416 ... Q93WE0 34239095
    1713 7e0k:W (3.09) BS03 CHL ? GO:0009416 ... Q93WE0 34239095
    1714 7e0k:W (3.09) BS07 CHL ? GO:0009416 ... Q93WE0 34239095
    1715 7e0k:W (3.09) BS08 CHL ? GO:0009416 ... Q93WE0 34239095
    1716 7e0k:W (3.09) BS09 CHL ? GO:0009416 ... Q93WE0 34239095
    1717 7e0k:W (3.09) BS10 CHL ? GO:0009416 ... Q93WE0 34239095
    1718 7e0k:W (3.09) BS11 CHL ? GO:0009416 ... Q93WE0 34239095
    1719 7ew6:1 (3.4) BS06 CHL ? GO:0009416 ... Q9SDM1 34879391
    1720 7ew6:1 (3.4) BS08 CHL ? GO:0009416 ... Q9SDM1 34879391
    1721 7ew6:1 (3.4) BS10 CHL ? GO:0009416 ... Q9SDM1 34879391
    1722 7ew6:2 (3.4) BS08 CHL ? GO:0009416 ... Q43485 34879391
    1723 7ew6:2 (3.4) BS09 CHL ? GO:0009416 ... Q43485 34879391
    1724 7ew6:2 (3.4) BS11 CHL ? GO:0009416 ... Q43485 34879391
    1725 7ew6:2 (3.4) BS12 CHL ? GO:0009416 ... Q43485 34879391
    1726 7ew6:2 (3.4) BS13 CHL ? GO:0009416 ... Q43485 34879391
    1727 7ew6:3 (3.4) BS02 CHL ? GO:0009507 ... F2DAN8 34879391
    1728 7ew6:3 (3.4) BS10 CHL ? GO:0009507 ... F2DAN8 34879391
    1729 7ew6:5 (3.4) BS01 CHL ? GO:0009507 ... F2CW18 34879391
    1730 7ew6:5 (3.4) BS08 CHL ? GO:0009507 ... F2CW18 34879391
    1731 7ew6:5 (3.4) BS09 CHL ? GO:0009507 ... F2CW18 34879391
    1732 7ewk:1 (3.88) BS08 CHL ? GO:0009765 ... Q9SDM1 34879391
    1733 7ewk:1 (3.88) BS10 CHL ? GO:0009765 ... Q9SDM1 34879391
    1734 7ewk:3 (3.88) BS09 CHL N/A GO:0009765 ... N/A 34879391
    1735 7ewk:3 (3.88) BS12 CHL N/A GO:0009765 ... N/A 34879391
    1736 7ewk:4 (3.88) BS08 CHL ? GO:0009765 ... Q9LKC7 34879391
    1737 7ewk:4 (3.88) BS09 CHL ? GO:0009765 ... Q9LKC7 34879391
    1738 7ewk:4 (3.88) BS11 CHL ? GO:0009765 ... Q9LKC7 34879391
    1739 7ewk:6 (3.88) BS08 CHL N/A GO:0009765 ... N/A 34879391
    1740 7ewk:6 (3.88) BS09 CHL N/A GO:0009765 ... N/A 34879391
    1741 7ewk:6 (3.88) BS11 CHL N/A GO:0009765 ... N/A 34879391
    1742 7ewk:6 (3.88) BS12 CHL N/A GO:0009765 ... N/A 34879391
    1743 7f9o:1 (4.5) BS06 CHL N/A GO:0009765 ... N/A 34879391
    1744 7f9o:1 (4.5) BS08 CHL N/A GO:0009765 ... N/A 34879391
    1745 7f9o:1 (4.5) BS10 CHL N/A GO:0009765 ... N/A 34879391
    1746 7f9o:2 (4.5) BS08 CHL ? GO:0009416 ... Q43485 34879391
    1747 7f9o:2 (4.5) BS09 CHL ? GO:0009416 ... Q43485 34879391
    1748 7f9o:2 (4.5) BS11 CHL ? GO:0009416 ... Q43485 34879391
    1749 7f9o:2 (4.5) BS12 CHL ? GO:0009416 ... Q43485 34879391
    1750 7f9o:2 (4.5) BS13 CHL ? GO:0009416 ... Q43485 34879391
    1751 7f9o:3 (4.5) BS02 CHL ? GO:0009507 ... F2DAN8 34879391
    1752 7f9o:3 (4.5) BS10 CHL ? GO:0009507 ... F2DAN8 34879391
    1753 7f9o:5 (4.5) BS01 CHL N/A GO:0009765 ... N/A 34879391
    1754 7f9o:5 (4.5) BS08 CHL N/A GO:0009765 ... N/A 34879391
    1755 7f9o:5 (4.5) BS09 CHL N/A GO:0009765 ... N/A 34879391
    1756 7f9o:p (4.5) BS08 CHL N/A GO:0009765 ... N/A 34879391
    1757 7f9o:p (4.5) BS10 CHL N/A GO:0009765 ... N/A 34879391
    1758 7f9o:q (4.5) BS09 CHL ? GO:0009507 ... F2DAN8 34879391
    1759 7f9o:q (4.5) BS12 CHL ? GO:0009507 ... F2DAN8 34879391
    1760 7f9o:r (4.5) BS08 CHL ? GO:0009765 ... Q9LKC7 34879391
    1761 7f9o:r (4.5) BS09 CHL ? GO:0009765 ... Q9LKC7 34879391
    1762 7f9o:r (4.5) BS11 CHL ? GO:0009765 ... Q9LKC7 34879391
    1763 7f9o:s (4.5) BS08 CHL ? GO:0009765 ... F2D0D5 34879391
    1764 7f9o:s (4.5) BS09 CHL ? GO:0009765 ... F2D0D5 34879391
    1765 7f9o:s (4.5) BS11 CHL ? GO:0009765 ... F2D0D5 34879391
    1766 7f9o:s (4.5) BS12 CHL ? GO:0009765 ... F2D0D5 34879391
    1767 7ksq:1 (2.8) BS05 CHL ? GO:0009765 ... A0A2K1JLZ3 35190662
    1768 7ksq:1 (2.8) BS14 CHL ? GO:0009765 ... A0A2K1JLZ3 35190662
    1769 7ksq:2 (2.8) BS01 CHL ? GO:0009765 ... A0A2K1IW94 35190662
    1770 7ksq:2 (2.8) BS04 CHL ? GO:0009765 ... A0A2K1IW94 35190662
    1771 7ksq:2 (2.8) BS05 CHL ? GO:0009765 ... A0A2K1IW94 35190662
    1772 7ksq:2 (2.8) BS06 CHL ? GO:0009765 ... A0A2K1IW94 35190662
    1773 7ksq:2 (2.8) BS09 CHL ? GO:0009765 ... A0A2K1IW94 35190662
    1774 7ksq:2 (2.8) BS13 CHL ? GO:0009765 ... A0A2K1IW94 35190662
    1775 7ksq:2 (2.8) BS14 CHL ? GO:0009765 ... A0A2K1IW94 35190662
    1776 7ksq:3 (2.8) BS05 CHL ? GO:0009765 ... A0A2K1IB10 35190662
    1777 7ksq:3 (2.8) BS12 CHL ? GO:0009765 ... A0A2K1IB10 35190662
    1778 7ksq:4 (2.8) BS01 CHL ? GO:0009765 ... A0A2K1K0E4 35190662
    1779 7ksq:4 (2.8) BS07 CHL ? GO:0009765 ... A0A2K1K0E4 35190662
    1780 7ksq:4 (2.8) BS08 CHL ? GO:0009765 ... A0A2K1K0E4 35190662
    1781 7ksq:4 (2.8) BS09 CHL ? GO:0009765 ... A0A2K1K0E4 35190662
    1782 7ksq:4 (2.8) BS15 CHL ? GO:0009765 ... A0A2K1K0E4 35190662
    1783 7kux:1 (2.8) BS05 CHL ? GO:0009765 ... A0A2K1JLZ3 35190662
    1784 7kux:1 (2.8) BS14 CHL ? GO:0009765 ... A0A2K1JLZ3 35190662
    1785 7kux:2 (2.8) BS01 CHL ? GO:0009765 ... A0A2K1IW94 35190662
    1786 7kux:2 (2.8) BS04 CHL ? GO:0009765 ... A0A2K1IW94 35190662
    1787 7kux:2 (2.8) BS05 CHL ? GO:0009765 ... A0A2K1IW94 35190662
    1788 7kux:2 (2.8) BS06 CHL ? GO:0009765 ... A0A2K1IW94 35190662
    1789 7kux:2 (2.8) BS09 CHL ? GO:0009765 ... A0A2K1IW94 35190662
    1790 7kux:2 (2.8) BS13 CHL ? GO:0009765 ... A0A2K1IW94 35190662
    1791 7kux:2 (2.8) BS14 CHL ? GO:0009765 ... A0A2K1IW94 35190662
    1792 7kux:3 (2.8) BS05 CHL ? GO:0009765 ... A0A2K1IB10 35190662
    1793 7kux:3 (2.8) BS12 CHL ? GO:0009765 ... A0A2K1IB10 35190662
    1794 7kux:4 (2.8) BS01 CHL ? GO:0009765 ... A0A2K1K0E4 35190662
    1795 7kux:4 (2.8) BS07 CHL ? GO:0009765 ... A0A2K1K0E4 35190662
    1796 7kux:4 (2.8) BS08 CHL ? GO:0009765 ... A0A2K1K0E4 35190662
    1797 7kux:4 (2.8) BS09 CHL ? GO:0009765 ... A0A2K1K0E4 35190662
    1798 7kux:4 (2.8) BS15 CHL ? GO:0009765 ... A0A2K1K0E4 35190662
    1799 7oui:1 (2.79) BS01 CHL ? GO:0005783 ... Q39142 34330992
    1800 7oui:1 (2.79) BS02 CHL ? GO:0005783 ... Q39142 34330992
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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