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BioLiP
Download all results in tab-seperated text for 3339 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 5xnn:3 (3.6) BS02 CHL ? GO:0009416 ... Q04918 28839073
    602 5xnn:3 (3.6) BS03 CHL ? GO:0009416 ... Q04918 28839073
    603 5xnn:3 (3.6) BS07 CHL ? GO:0009416 ... Q04918 28839073
    604 5xnn:3 (3.6) BS08 CHL ? GO:0009416 ... Q04918 28839073
    605 5xnn:3 (3.6) BS09 CHL ? GO:0009416 ... Q04918 28839073
    606 5xnn:3 (3.6) BS10 CHL ? GO:0009416 ... Q04918 28839073
    607 5xnn:3 (3.6) BS11 CHL ? GO:0009416 ... Q04918 28839073
    608 5xnn:4 (3.6) BS02 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    609 5xnn:4 (3.6) BS06 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    610 5xnn:4 (3.6) BS07 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    611 5xnn:4 (3.6) BS08 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    612 5xnn:4 (3.6) BS09 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    613 5xno:1 (3.5) BS01 CHL ? GO:0009765 ... P27490 28839073
    614 5xno:1 (3.5) BS04 CHL ? GO:0009765 ... P27490 28839073
    615 5xno:1 (3.5) BS05 CHL ? GO:0009765 ... P27490 28839073
    616 5xno:1 (3.5) BS06 CHL ? GO:0009765 ... P27490 28839073
    617 5xno:1 (3.5) BS07 CHL ? GO:0009765 ... P27490 28839073
    618 5xno:1 (3.5) BS08 CHL ? GO:0009765 ... P27490 28839073
    619 5xno:1 (3.5) BS14 CHL ? GO:0009765 ... P27490 28839073
    620 5xno:1 (3.5) BS15 CHL ? GO:0009765 ... P27490 28839073
    621 5xno:2 (3.5) BS01 CHL ? GO:0009765 ... P27490 28839073
    622 5xno:2 (3.5) BS05 CHL ? GO:0009765 ... P27490 28839073
    623 5xno:2 (3.5) BS06 CHL ? GO:0009765 ... P27490 28839073
    624 5xno:2 (3.5) BS07 CHL ? GO:0009765 ... P27490 28839073
    625 5xno:2 (3.5) BS08 CHL ? GO:0009765 ... P27490 28839073
    626 5xno:2 (3.5) BS09 CHL ? GO:0009765 ... P27490 28839073
    627 5xno:2 (3.5) BS15 CHL ? GO:0009765 ... P27490 28839073
    628 5xno:3 (3.5) BS01 CHL ? GO:0009416 ... Q04918 28839073
    629 5xno:3 (3.5) BS02 CHL ? GO:0009416 ... Q04918 28839073
    630 5xno:3 (3.5) BS03 CHL ? GO:0009416 ... Q04918 28839073
    631 5xno:3 (3.5) BS07 CHL ? GO:0009416 ... Q04918 28839073
    632 5xno:3 (3.5) BS08 CHL ? GO:0009416 ... Q04918 28839073
    633 5xno:3 (3.5) BS09 CHL ? GO:0009416 ... Q04918 28839073
    634 5xno:3 (3.5) BS10 CHL ? GO:0009416 ... Q04918 28839073
    635 5xno:3 (3.5) BS11 CHL ? GO:0009416 ... Q04918 28839073
    636 5xno:4 (3.5) BS02 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    637 5xno:4 (3.5) BS06 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    638 5xno:4 (3.5) BS07 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    639 5xno:4 (3.5) BS08 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    640 5xno:4 (3.5) BS09 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    641 5zji:1 (3.3) BS01 CHL ? GO:0009416 ... B6SSN3 29880686
    642 5zji:1 (3.3) BS06 CHL ? GO:0009416 ... B6SSN3 29880686
    643 5zji:2 (3.3) BS01 CHL ? GO:0009416 ... B6T892 29880686
    644 5zji:2 (3.3) BS05 CHL ? GO:0009416 ... B6T892 29880686
    645 5zji:2 (3.3) BS06 CHL ? GO:0009416 ... B6T892 29880686
    646 5zji:2 (3.3) BS07 CHL ? GO:0009416 ... B6T892 29880686
    647 5zji:2 (3.3) BS13 CHL ? GO:0009416 ... B6T892 29880686
    648 5zji:3 (3.3) BS01 CHL ? GO:0009416 ... B6SUC4 29880686
    649 5zji:3 (3.3) BS08 CHL ? GO:0009416 ... B6SUC4 29880686
    650 5zji:4 (3.3) BS01 CHL ? GO:0009507 ... B6SZR1 29880686
    651 5zji:4 (3.3) BS06 CHL ? GO:0009507 ... B6SZR1 29880686
    652 5zji:4 (3.3) BS07 CHL ? GO:0009507 ... B6SZR1 29880686
    653 5zji:4 (3.3) BS08 CHL ? GO:0009507 ... B6SZR1 29880686
    654 5zji:4 (3.3) BS16 CHL ? GO:0009507 ... B6SZR1 29880686
    655 5zji:X (3.3) BS01 CHL ? GO:0009765 ... P12329 29880686
    656 5zji:X (3.3) BS04 CHL ? GO:0009765 ... P12329 29880686
    657 5zji:X (3.3) BS05 CHL ? GO:0009765 ... P12329 29880686
    658 5zji:X (3.3) BS06 CHL ? GO:0009765 ... P12329 29880686
    659 5zji:X (3.3) BS07 CHL ? GO:0009765 ... P12329 29880686
    660 5zji:X (3.3) BS08 CHL ? GO:0009765 ... P12329 29880686
    661 5zji:Y (3.3) BS01 CHL ? GO:0009765 ... B6SZT9 29880686
    662 5zji:Y (3.3) BS05 CHL ? GO:0009765 ... B6SZT9 29880686
    663 5zji:Y (3.3) BS06 CHL ? GO:0009765 ... B6SZT9 29880686
    664 5zji:Y (3.3) BS07 CHL ? GO:0009765 ... B6SZT9 29880686
    665 5zji:Y (3.3) BS08 CHL ? GO:0009765 ... B6SZT9 29880686
    666 5zji:Y (3.3) BS09 CHL ? GO:0009765 ... B6SZT9 29880686
    667 5zji:Y (3.3) BS15 CHL ? GO:0009765 ... B6SZT9 29880686
    668 5zji:Z (3.3) BS01 CHL ? GO:0009765 ... P12329 29880686
    669 5zji:Z (3.3) BS02 CHL ? GO:0009765 ... P12329 29880686
    670 5zji:Z (3.3) BS06 CHL ? GO:0009765 ... P12329 29880686
    671 5zji:Z (3.3) BS07 CHL ? GO:0009765 ... P12329 29880686
    672 5zji:Z (3.3) BS08 CHL ? GO:0009765 ... P12329 29880686
    673 5zji:Z (3.3) BS09 CHL ? GO:0009765 ... P12329 29880686
    674 5zji:Z (3.3) BS10 CHL ? GO:0009765 ... P12329 29880686
    675 6gix:A (2.8) BS01 CHL ? GO:0004866 ... O04797 30297830
    676 6gix:A (2.8) BS02 CHL ? GO:0004866 ... O04797 30297830
    677 6gix:B (2.8) BS01 CHL ? GO:0004866 ... O04797 30297830
    678 6gix:B (2.8) BS02 CHL ? GO:0004866 ... O04797 30297830
    679 6gix:C (2.8) BS01 CHL ? GO:0004866 ... O04797 30297830
    680 6gix:C (2.8) BS02 CHL ? GO:0004866 ... O04797 30297830
    681 6gix:D (2.8) BS01 CHL ? GO:0004866 ... O04797 30297830
    682 6igz:0 (3.49) BS01 CHL ? GO:0009416 ... A0A4V8H004 30850820
    683 6igz:0 (3.49) BS06 CHL ? GO:0009416 ... A0A4V8H004 30850820
    684 6igz:1 (3.49) BS05 CHL ? GO:0009416 ... A0A4V8GZZ6 30850820
    685 6igz:1 (3.49) BS13 CHL ? GO:0009416 ... A0A4V8GZZ6 30850820
    686 6igz:2 (3.49) BS01 CHL ? GO:0009416 ... A0A4V8GZZ7 30850820
    687 6igz:2 (3.49) BS05 CHL ? GO:0009416 ... A0A4V8GZZ7 30850820
    688 6igz:2 (3.49) BS06 CHL ? GO:0009416 ... A0A4V8GZZ7 30850820
    689 6igz:2 (3.49) BS07 CHL ? GO:0009416 ... A0A4V8GZZ7 30850820
    690 6igz:3 (3.49) BS02 CHL ? GO:0009416 ... A0A4V8GZZ8 30850820
    691 6igz:3 (3.49) BS08 CHL ? GO:0009416 ... A0A4V8GZZ8 30850820
    692 6igz:4 (3.49) BS03 CHL ? GO:0009416 ... A0A4V8GZZ9 30850820
    693 6igz:4 (3.49) BS07 CHL ? GO:0009416 ... A0A4V8GZZ9 30850820
    694 6igz:4 (3.49) BS08 CHL ? GO:0009416 ... A0A4V8GZZ9 30850820
    695 6igz:4 (3.49) BS09 CHL ? GO:0009416 ... A0A4V8GZZ9 30850820
    696 6igz:5 (3.49) BS01 CHL ? GO:0009416 ... A0A4V8GZZ6 30850820
    697 6igz:5 (3.49) BS06 CHL ? GO:0009416 ... A0A4V8GZZ6 30850820
    698 6igz:6 (3.49) BS02 CHL ? GO:0009416 ... A0A4V8H000 30850820
    699 6igz:6 (3.49) BS06 CHL ? GO:0009416 ... A0A4V8H000 30850820
    700 6igz:6 (3.49) BS07 CHL ? GO:0009416 ... A0A4V8H000 30850820
    701 6igz:6 (3.49) BS08 CHL ? GO:0009416 ... A0A4V8H000 30850820
    702 6igz:6 (3.49) BS15 CHL ? GO:0009416 ... A0A4V8H000 30850820
    703 6igz:7 (3.49) BS02 CHL ? GO:0009416 ... A0A4V8H001 30850820
    704 6igz:7 (3.49) BS10 CHL ? GO:0009416 ... A0A4V8H001 30850820
    705 6igz:8 (3.49) BS02 CHL ? GO:0009416 ... A0A4V8GZZ9 30850820
    706 6igz:8 (3.49) BS06 CHL ? GO:0009416 ... A0A4V8GZZ9 30850820
    707 6igz:8 (3.49) BS07 CHL ? GO:0009416 ... A0A4V8GZZ9 30850820
    708 6igz:8 (3.49) BS08 CHL ? GO:0009416 ... A0A4V8GZZ9 30850820
    709 6igz:8 (3.49) BS15 CHL ? GO:0009416 ... A0A4V8GZZ9 30850820
    710 6igz:9 (3.49) BS02 CHL ? GO:0009416 ... A0A4V8H002 30850820
    711 6igz:9 (3.49) BS07 CHL ? GO:0009416 ... A0A4V8H002 30850820
    712 6igz:9 (3.49) BS13 CHL ? GO:0009416 ... A0A4V8H002 30850820
    713 6jo5:1 (2.9) BS01 CHL ? GO:0009765 ... Q05093 31182847
    714 6jo5:1 (2.9) BS06 CHL ? GO:0009765 ... Q05093 31182847
    715 6jo5:3 (2.9) BS08 CHL N/A GO:0009765 ... N/A 31182847
    716 6jo5:4 (2.9) BS01 CHL ? GO:0009765 ... Q75VZ0 31182847
    717 6jo5:4 (2.9) BS06 CHL ? GO:0009765 ... Q75VZ0 31182847
    718 6jo5:4 (2.9) BS07 CHL ? GO:0009765 ... Q75VZ0 31182847
    719 6jo5:4 (2.9) BS08 CHL ? GO:0009765 ... Q75VZ0 31182847
    720 6jo5:4 (2.9) BS16 CHL ? GO:0009765 ... Q75VZ0 31182847
    721 6jo5:5 (2.9) BS07 CHL ? GO:0009765 ... Q75VY8 31182847
    722 6jo5:5 (2.9) BS08 CHL ? GO:0009765 ... Q75VY8 31182847
    723 6jo5:5 (2.9) BS17 CHL ? GO:0009765 ... Q75VY8 31182847
    724 6jo5:6 (2.9) BS08 CHL ? GO:0009416 ... Q75VY6 31182847
    725 6jo5:6 (2.9) BS09 CHL ? GO:0009416 ... Q75VY6 31182847
    726 6jo5:6 (2.9) BS10 CHL ? GO:0009416 ... Q75VY6 31182847
    727 6jo5:6 (2.9) BS19 CHL ? GO:0009416 ... Q75VY6 31182847
    728 6jo5:7 (2.9) BS06 CHL ? GO:0009765 ... Q84Y02 31182847
    729 6jo5:8 (2.9) BS01 CHL ? GO:0009765 ... Q75VY7 31182847
    730 6jo5:8 (2.9) BS06 CHL ? GO:0009765 ... Q75VY7 31182847
    731 6jo5:9 (2.9) BS06 CHL ? GO:0009765 ... A8ITV3 31182847
    732 6jo5:9 (2.9) BS07 CHL ? GO:0009765 ... A8ITV3 31182847
    733 6jo5:Z (2.9) BS01 CHL ? GO:0009765 ... Q05093 31182847
    734 6jo5:Z (2.9) BS06 CHL ? GO:0009765 ... Q05093 31182847
    735 6jo6:1 (2.9) BS01 CHL ? GO:0009765 ... Q05093 31182847
    736 6jo6:1 (2.9) BS06 CHL ? GO:0009765 ... Q05093 31182847
    737 6jo6:3 (2.9) BS08 CHL N/A GO:0009765 ... N/A 31182847
    738 6jo6:4 (2.9) BS01 CHL ? GO:0009765 ... Q75VZ0 31182847
    739 6jo6:4 (2.9) BS07 CHL ? GO:0009765 ... Q75VZ0 31182847
    740 6jo6:4 (2.9) BS08 CHL ? GO:0009765 ... Q75VZ0 31182847
    741 6jo6:4 (2.9) BS09 CHL ? GO:0009765 ... Q75VZ0 31182847
    742 6jo6:4 (2.9) BS17 CHL ? GO:0009765 ... Q75VZ0 31182847
    743 6jo6:5 (2.9) BS07 CHL ? GO:0009765 ... Q75VY8 31182847
    744 6jo6:5 (2.9) BS08 CHL ? GO:0009765 ... Q75VY8 31182847
    745 6jo6:5 (2.9) BS17 CHL ? GO:0009765 ... Q75VY8 31182847
    746 6jo6:6 (2.9) BS08 CHL ? GO:0009416 ... Q75VY6 31182847
    747 6jo6:6 (2.9) BS09 CHL ? GO:0009416 ... Q75VY6 31182847
    748 6jo6:6 (2.9) BS10 CHL ? GO:0009416 ... Q75VY6 31182847
    749 6jo6:6 (2.9) BS19 CHL ? GO:0009416 ... Q75VY6 31182847
    750 6jo6:7 (2.9) BS06 CHL ? GO:0009765 ... Q84Y02 31182847
    751 6jo6:8 (2.9) BS05 CHL ? GO:0009765 ... Q75VY7 31182847
    752 6jo6:Z (2.9) BS01 CHL ? GO:0009765 ... Q05093 31182847
    753 6jo6:Z (2.9) BS06 CHL ? GO:0009765 ... Q05093 31182847
    754 6kac:G (2.7) BS01 CHL ? GO:0009416 ... Q93WE0 31768031
    755 6kac:G (2.7) BS05 CHL ? GO:0009416 ... Q93WE0 31768031
    756 6kac:G (2.7) BS06 CHL ? GO:0009416 ... Q93WE0 31768031
    757 6kac:G (2.7) BS07 CHL ? GO:0009416 ... Q93WE0 31768031
    758 6kac:G (2.7) BS08 CHL ? GO:0009416 ... Q93WE0 31768031
    759 6kac:G (2.7) BS09 CHL ? GO:0009416 ... Q93WE0 31768031
    760 6kac:G (2.7) BS15 CHL ? GO:0009416 ... Q93WE0 31768031
    761 6kac:G (2.7) BS16 CHL ? GO:0009416 ... Q93WE0 31768031
    762 6kac:N (2.7) BS01 CHL ? GO:0009416 ... Q93WL4 31768031
    763 6kac:N (2.7) BS05 CHL ? GO:0009416 ... Q93WL4 31768031
    764 6kac:N (2.7) BS06 CHL ? GO:0009416 ... Q93WL4 31768031
    765 6kac:N (2.7) BS07 CHL ? GO:0009416 ... Q93WL4 31768031
    766 6kac:N (2.7) BS08 CHL ? GO:0009416 ... Q93WL4 31768031
    767 6kac:N (2.7) BS09 CHL ? GO:0009416 ... Q93WL4 31768031
    768 6kac:N (2.7) BS15 CHL ? GO:0009416 ... Q93WL4 31768031
    769 6kac:N (2.7) BS16 CHL ? GO:0009416 ... Q93WL4 31768031
    770 6kac:R (2.7) BS03 CHL ? GO:0009503 ... Q93WD2 31768031
    771 6kac:R (2.7) BS04 CHL ? GO:0009503 ... Q93WD2 31768031
    772 6kac:R (2.7) BS05 CHL ? GO:0009503 ... Q93WD2 31768031
    773 6kac:R (2.7) BS08 CHL ? GO:0009503 ... Q93WD2 31768031
    774 6kac:S (2.7) BS02 CHL ? GO:0003729 ... Q9FEK6 31768031
    775 6kac:S (2.7) BS03 CHL ? GO:0003729 ... Q9FEK6 31768031
    776 6kac:S (2.7) BS08 CHL ? GO:0003729 ... Q9FEK6 31768031
    777 6kac:S (2.7) BS09 CHL ? GO:0003729 ... Q9FEK6 31768031
    778 6kac:S (2.7) BS10 CHL ? GO:0003729 ... Q9FEK6 31768031
    779 6kac:Y (2.7) BS01 CHL ? GO:0009416 ... Q93VE0 31768031
    780 6kac:Y (2.7) BS02 CHL ? GO:0009416 ... Q93VE0 31768031
    781 6kac:Y (2.7) BS06 CHL ? GO:0009416 ... Q93VE0 31768031
    782 6kac:Y (2.7) BS07 CHL ? GO:0009416 ... Q93VE0 31768031
    783 6kac:Y (2.7) BS08 CHL ? GO:0009416 ... Q93VE0 31768031
    784 6kac:Y (2.7) BS09 CHL ? GO:0009416 ... Q93VE0 31768031
    785 6kac:Y (2.7) BS10 CHL ? GO:0009416 ... Q93VE0 31768031
    786 6kac:g (2.7) BS01 CHL ? GO:0009416 ... Q93WE0 31768031
    787 6kac:g (2.7) BS05 CHL ? GO:0009416 ... Q93WE0 31768031
    788 6kac:g (2.7) BS06 CHL ? GO:0009416 ... Q93WE0 31768031
    789 6kac:g (2.7) BS07 CHL ? GO:0009416 ... Q93WE0 31768031
    790 6kac:g (2.7) BS08 CHL ? GO:0009416 ... Q93WE0 31768031
    791 6kac:g (2.7) BS09 CHL ? GO:0009416 ... Q93WE0 31768031
    792 6kac:g (2.7) BS15 CHL ? GO:0009416 ... Q93WE0 31768031
    793 6kac:n (2.7) BS01 CHL ? GO:0009416 ... Q93WL4 31768031
    794 6kac:n (2.7) BS05 CHL ? GO:0009416 ... Q93WL4 31768031
    795 6kac:n (2.7) BS06 CHL ? GO:0009416 ... Q93WL4 31768031
    796 6kac:n (2.7) BS07 CHL ? GO:0009416 ... Q93WL4 31768031
    797 6kac:n (2.7) BS08 CHL ? GO:0009416 ... Q93WL4 31768031
    798 6kac:n (2.7) BS09 CHL ? GO:0009416 ... Q93WL4 31768031
    799 6kac:n (2.7) BS15 CHL ? GO:0009416 ... Q93WL4 31768031
    800 6kac:n (2.7) BS16 CHL ? GO:0009416 ... Q93WL4 31768031
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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