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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 3339 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 5xnl:N (2.7) BS04 CHL ? GO:0009765 ... P27490 28839073
    402 5xnl:N (2.7) BS08 CHL ? GO:0009765 ... P27490 28839073
    403 5xnl:N (2.7) BS09 CHL ? GO:0009765 ... P27490 28839073
    404 5xnl:N (2.7) BS10 CHL ? GO:0009765 ... P27490 28839073
    405 5xnl:N (2.7) BS11 CHL ? GO:0009765 ... P27490 28839073
    406 5xnl:N (2.7) BS12 CHL ? GO:0009765 ... P27490 28839073
    407 5xnl:R (2.7) BS05 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    408 5xnl:R (2.7) BS06 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    409 5xnl:R (2.7) BS07 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    410 5xnl:R (2.7) BS13 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    411 5xnl:R (2.7) BS15 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    412 5xnl:S (2.7) BS02 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    413 5xnl:S (2.7) BS03 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    414 5xnl:S (2.7) BS07 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    415 5xnl:S (2.7) BS08 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    416 5xnl:S (2.7) BS09 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    417 5xnl:Y (2.7) BS02 CHL ? GO:0009765 ... P27490 28839073
    418 5xnl:Y (2.7) BS03 CHL ? GO:0009765 ... P27490 28839073
    419 5xnl:Y (2.7) BS04 CHL ? GO:0009765 ... P27490 28839073
    420 5xnl:Y (2.7) BS08 CHL ? GO:0009765 ... P27490 28839073
    421 5xnl:Y (2.7) BS09 CHL ? GO:0009765 ... P27490 28839073
    422 5xnl:Y (2.7) BS10 CHL ? GO:0009765 ... P27490 28839073
    423 5xnl:Y (2.7) BS11 CHL ? GO:0009765 ... P27490 28839073
    424 5xnl:Y (2.7) BS12 CHL ? GO:0009765 ... P27490 28839073
    425 5xnl:g (2.7) BS01 CHL ? GO:0009765 ... P27490 28839073
    426 5xnl:g (2.7) BS05 CHL ? GO:0009765 ... P27490 28839073
    427 5xnl:g (2.7) BS06 CHL ? GO:0009765 ... P27490 28839073
    428 5xnl:g (2.7) BS07 CHL ? GO:0009765 ... P27490 28839073
    429 5xnl:g (2.7) BS08 CHL ? GO:0009765 ... P27490 28839073
    430 5xnl:g (2.7) BS09 CHL ? GO:0009765 ... P27490 28839073
    431 5xnl:g (2.7) BS15 CHL ? GO:0009765 ... P27490 28839073
    432 5xnl:g (2.7) BS16 CHL ? GO:0009765 ... P27490 28839073
    433 5xnl:g (2.7) BS17 CHL ? GO:0009765 ... P27490 28839073
    434 5xnl:n (2.7) BS02 CHL ? GO:0009765 ... P27490 28839073
    435 5xnl:n (2.7) BS03 CHL ? GO:0009765 ... P27490 28839073
    436 5xnl:n (2.7) BS04 CHL ? GO:0009765 ... P27490 28839073
    437 5xnl:n (2.7) BS08 CHL ? GO:0009765 ... P27490 28839073
    438 5xnl:n (2.7) BS09 CHL ? GO:0009765 ... P27490 28839073
    439 5xnl:n (2.7) BS10 CHL ? GO:0009765 ... P27490 28839073
    440 5xnl:n (2.7) BS11 CHL ? GO:0009765 ... P27490 28839073
    441 5xnl:n (2.7) BS12 CHL ? GO:0009765 ... P27490 28839073
    442 5xnl:r (2.7) BS01 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    443 5xnl:r (2.7) BS06 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    444 5xnl:r (2.7) BS07 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    445 5xnl:r (2.7) BS08 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    446 5xnl:r (2.7) BS14 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    447 5xnl:s (2.7) BS02 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    448 5xnl:s (2.7) BS03 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    449 5xnl:s (2.7) BS07 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    450 5xnl:s (2.7) BS08 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    451 5xnl:s (2.7) BS09 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    452 5xnl:y (2.7) BS02 CHL ? GO:0009765 ... P27490 28839073
    453 5xnl:y (2.7) BS03 CHL ? GO:0009765 ... P27490 28839073
    454 5xnl:y (2.7) BS04 CHL ? GO:0009765 ... P27490 28839073
    455 5xnl:y (2.7) BS08 CHL ? GO:0009765 ... P27490 28839073
    456 5xnl:y (2.7) BS09 CHL ? GO:0009765 ... P27490 28839073
    457 5xnl:y (2.7) BS10 CHL ? GO:0009765 ... P27490 28839073
    458 5xnl:y (2.7) BS11 CHL ? GO:0009765 ... P27490 28839073
    459 5xnl:y (2.7) BS12 CHL ? GO:0009765 ... P27490 28839073
    460 5xnm:1 (3.2) BS01 CHL ? GO:0009765 ... P27490 28839073
    461 5xnm:1 (3.2) BS04 CHL ? GO:0009765 ... P27490 28839073
    462 5xnm:1 (3.2) BS05 CHL ? GO:0009765 ... P27490 28839073
    463 5xnm:1 (3.2) BS06 CHL ? GO:0009765 ... P27490 28839073
    464 5xnm:1 (3.2) BS07 CHL ? GO:0009765 ... P27490 28839073
    465 5xnm:1 (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    466 5xnm:1 (3.2) BS14 CHL ? GO:0009765 ... P27490 28839073
    467 5xnm:1 (3.2) BS15 CHL ? GO:0009765 ... P27490 28839073
    468 5xnm:2 (3.2) BS01 CHL ? GO:0009765 ... P27490 28839073
    469 5xnm:2 (3.2) BS05 CHL ? GO:0009765 ... P27490 28839073
    470 5xnm:2 (3.2) BS06 CHL ? GO:0009765 ... P27490 28839073
    471 5xnm:2 (3.2) BS07 CHL ? GO:0009765 ... P27490 28839073
    472 5xnm:2 (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    473 5xnm:2 (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    474 5xnm:2 (3.2) BS15 CHL ? GO:0009765 ... P27490 28839073
    475 5xnm:3 (3.2) BS01 CHL ? GO:0009416 ... Q04918 28839073
    476 5xnm:3 (3.2) BS02 CHL ? GO:0009416 ... Q04918 28839073
    477 5xnm:3 (3.2) BS03 CHL ? GO:0009416 ... Q04918 28839073
    478 5xnm:3 (3.2) BS07 CHL ? GO:0009416 ... Q04918 28839073
    479 5xnm:3 (3.2) BS08 CHL ? GO:0009416 ... Q04918 28839073
    480 5xnm:3 (3.2) BS09 CHL ? GO:0009416 ... Q04918 28839073
    481 5xnm:3 (3.2) BS10 CHL ? GO:0009416 ... Q04918 28839073
    482 5xnm:3 (3.2) BS11 CHL ? GO:0009416 ... Q04918 28839073
    483 5xnm:4 (3.2) BS02 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    484 5xnm:4 (3.2) BS06 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    485 5xnm:4 (3.2) BS07 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    486 5xnm:4 (3.2) BS08 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    487 5xnm:4 (3.2) BS09 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    488 5xnm:5 (3.2) BS01 CHL ? GO:0009765 ... P27490 28839073
    489 5xnm:5 (3.2) BS04 CHL ? GO:0009765 ... P27490 28839073
    490 5xnm:5 (3.2) BS05 CHL ? GO:0009765 ... P27490 28839073
    491 5xnm:5 (3.2) BS06 CHL ? GO:0009765 ... P27490 28839073
    492 5xnm:5 (3.2) BS07 CHL ? GO:0009765 ... P27490 28839073
    493 5xnm:5 (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    494 5xnm:5 (3.2) BS14 CHL ? GO:0009765 ... P27490 28839073
    495 5xnm:5 (3.2) BS15 CHL ? GO:0009765 ... P27490 28839073
    496 5xnm:6 (3.2) BS01 CHL ? GO:0009765 ... P27490 28839073
    497 5xnm:6 (3.2) BS05 CHL ? GO:0009765 ... P27490 28839073
    498 5xnm:6 (3.2) BS06 CHL ? GO:0009765 ... P27490 28839073
    499 5xnm:6 (3.2) BS07 CHL ? GO:0009765 ... P27490 28839073
    500 5xnm:6 (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    501 5xnm:6 (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    502 5xnm:6 (3.2) BS15 CHL ? GO:0009765 ... P27490 28839073
    503 5xnm:7 (3.2) BS01 CHL ? GO:0009416 ... Q04918 28839073
    504 5xnm:7 (3.2) BS02 CHL ? GO:0009416 ... Q04918 28839073
    505 5xnm:7 (3.2) BS03 CHL ? GO:0009416 ... Q04918 28839073
    506 5xnm:7 (3.2) BS07 CHL ? GO:0009416 ... Q04918 28839073
    507 5xnm:7 (3.2) BS08 CHL ? GO:0009416 ... Q04918 28839073
    508 5xnm:7 (3.2) BS09 CHL ? GO:0009416 ... Q04918 28839073
    509 5xnm:7 (3.2) BS10 CHL ? GO:0009416 ... Q04918 28839073
    510 5xnm:7 (3.2) BS11 CHL ? GO:0009416 ... Q04918 28839073
    511 5xnm:8 (3.2) BS02 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    512 5xnm:8 (3.2) BS06 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    513 5xnm:8 (3.2) BS07 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    514 5xnm:8 (3.2) BS08 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    515 5xnm:8 (3.2) BS09 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    516 5xnm:B (3.2) BS19 CHL ? GO:0009507 ... Q9XQR6 28839073
    517 5xnm:G (3.2) BS01 CHL ? GO:0009765 ... P27490 28839073
    518 5xnm:G (3.2) BS05 CHL ? GO:0009765 ... P27490 28839073
    519 5xnm:G (3.2) BS06 CHL ? GO:0009765 ... P27490 28839073
    520 5xnm:G (3.2) BS07 CHL ? GO:0009765 ... P27490 28839073
    521 5xnm:G (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    522 5xnm:G (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    523 5xnm:G (3.2) BS15 CHL ? GO:0009765 ... P27490 28839073
    524 5xnm:G (3.2) BS16 CHL ? GO:0009765 ... P27490 28839073
    525 5xnm:N (3.2) BS02 CHL ? GO:0009765 ... P27490 28839073
    526 5xnm:N (3.2) BS03 CHL ? GO:0009765 ... P27490 28839073
    527 5xnm:N (3.2) BS04 CHL ? GO:0009765 ... P27490 28839073
    528 5xnm:N (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    529 5xnm:N (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    530 5xnm:N (3.2) BS10 CHL ? GO:0009765 ... P27490 28839073
    531 5xnm:N (3.2) BS11 CHL ? GO:0009765 ... P27490 28839073
    532 5xnm:N (3.2) BS12 CHL ? GO:0009765 ... P27490 28839073
    533 5xnm:R (3.2) BS05 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    534 5xnm:R (3.2) BS06 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    535 5xnm:R (3.2) BS07 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    536 5xnm:R (3.2) BS13 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    537 5xnm:S (3.2) BS02 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    538 5xnm:S (3.2) BS03 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    539 5xnm:S (3.2) BS06 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    540 5xnm:S (3.2) BS07 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    541 5xnm:S (3.2) BS08 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    542 5xnm:Y (3.2) BS02 CHL ? GO:0009765 ... P27490 28839073
    543 5xnm:Y (3.2) BS03 CHL ? GO:0009765 ... P27490 28839073
    544 5xnm:Y (3.2) BS04 CHL ? GO:0009765 ... P27490 28839073
    545 5xnm:Y (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    546 5xnm:Y (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    547 5xnm:Y (3.2) BS10 CHL ? GO:0009765 ... P27490 28839073
    548 5xnm:Y (3.2) BS11 CHL ? GO:0009765 ... P27490 28839073
    549 5xnm:Y (3.2) BS12 CHL ? GO:0009765 ... P27490 28839073
    550 5xnm:b (3.2) BS19 CHL ? GO:0009507 ... Q9XQR6 28839073
    551 5xnm:g (3.2) BS01 CHL ? GO:0009765 ... P27490 28839073
    552 5xnm:g (3.2) BS05 CHL ? GO:0009765 ... P27490 28839073
    553 5xnm:g (3.2) BS06 CHL ? GO:0009765 ... P27490 28839073
    554 5xnm:g (3.2) BS07 CHL ? GO:0009765 ... P27490 28839073
    555 5xnm:g (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    556 5xnm:g (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    557 5xnm:g (3.2) BS15 CHL ? GO:0009765 ... P27490 28839073
    558 5xnm:g (3.2) BS16 CHL ? GO:0009765 ... P27490 28839073
    559 5xnm:n (3.2) BS02 CHL ? GO:0009765 ... P27490 28839073
    560 5xnm:n (3.2) BS03 CHL ? GO:0009765 ... P27490 28839073
    561 5xnm:n (3.2) BS04 CHL ? GO:0009765 ... P27490 28839073
    562 5xnm:n (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    563 5xnm:n (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    564 5xnm:n (3.2) BS10 CHL ? GO:0009765 ... P27490 28839073
    565 5xnm:n (3.2) BS11 CHL ? GO:0009765 ... P27490 28839073
    566 5xnm:n (3.2) BS12 CHL ? GO:0009765 ... P27490 28839073
    567 5xnm:r (3.2) BS01 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    568 5xnm:r (3.2) BS06 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    569 5xnm:r (3.2) BS07 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    570 5xnm:r (3.2) BS08 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    571 5xnm:r (3.2) BS14 CHL ? GO:0009416 ... A0A2D0TCJ0 28839073
    572 5xnm:s (3.2) BS02 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    573 5xnm:s (3.2) BS03 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    574 5xnm:s (3.2) BS06 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    575 5xnm:s (3.2) BS07 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    576 5xnm:s (3.2) BS08 CHL ? GO:0009416 ... A0A2D0TCJ1 28839073
    577 5xnm:y (3.2) BS02 CHL ? GO:0009765 ... P27490 28839073
    578 5xnm:y (3.2) BS03 CHL ? GO:0009765 ... P27490 28839073
    579 5xnm:y (3.2) BS04 CHL ? GO:0009765 ... P27490 28839073
    580 5xnm:y (3.2) BS08 CHL ? GO:0009765 ... P27490 28839073
    581 5xnm:y (3.2) BS09 CHL ? GO:0009765 ... P27490 28839073
    582 5xnm:y (3.2) BS10 CHL ? GO:0009765 ... P27490 28839073
    583 5xnm:y (3.2) BS11 CHL ? GO:0009765 ... P27490 28839073
    584 5xnm:y (3.2) BS12 CHL ? GO:0009765 ... P27490 28839073
    585 5xnn:1 (3.6) BS01 CHL ? GO:0009765 ... P27490 28839073
    586 5xnn:1 (3.6) BS05 CHL ? GO:0009765 ... P27490 28839073
    587 5xnn:1 (3.6) BS06 CHL ? GO:0009765 ... P27490 28839073
    588 5xnn:1 (3.6) BS07 CHL ? GO:0009765 ... P27490 28839073
    589 5xnn:1 (3.6) BS08 CHL ? GO:0009765 ... P27490 28839073
    590 5xnn:1 (3.6) BS09 CHL ? GO:0009765 ... P27490 28839073
    591 5xnn:1 (3.6) BS16 CHL ? GO:0009765 ... P27490 28839073
    592 5xnn:2 (3.6) BS01 CHL ? GO:0009765 ... P27490 28839073
    593 5xnn:2 (3.6) BS05 CHL ? GO:0009765 ... P27490 28839073
    594 5xnn:2 (3.6) BS06 CHL ? GO:0009765 ... P27490 28839073
    595 5xnn:2 (3.6) BS07 CHL ? GO:0009765 ... P27490 28839073
    596 5xnn:2 (3.6) BS08 CHL ? GO:0009765 ... P27490 28839073
    597 5xnn:2 (3.6) BS09 CHL ? GO:0009765 ... P27490 28839073
    598 5xnn:2 (3.6) BS15 CHL ? GO:0009765 ... P27490 28839073
    599 5xnn:2 (3.6) BS16 CHL ? GO:0009765 ... P27490 28839073
    600 5xnn:3 (3.6) BS01 CHL ? GO:0009416 ... Q04918 28839073
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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