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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 3339 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1rwt:A (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    2 1rwt:A (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    3 1rwt:A (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    4 1rwt:A (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    5 1rwt:A (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    6 1rwt:A (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    7 1rwt:B (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    8 1rwt:B (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    9 1rwt:B (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    10 1rwt:B (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    11 1rwt:B (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    12 1rwt:B (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    13 1rwt:B (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    14 1rwt:B (2.72) BS17 CHL ? GO:0009765 ... P12333 15029188
    15 1rwt:C (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    16 1rwt:C (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    17 1rwt:C (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    18 1rwt:C (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    19 1rwt:C (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    20 1rwt:C (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    21 1rwt:C (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    22 1rwt:C (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    23 1rwt:D (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    24 1rwt:D (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    25 1rwt:D (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    26 1rwt:D (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    27 1rwt:D (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    28 1rwt:D (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    29 1rwt:D (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    30 1rwt:D (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    31 1rwt:E (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    32 1rwt:E (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    33 1rwt:E (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    34 1rwt:E (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    35 1rwt:E (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    36 1rwt:E (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    37 1rwt:E (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    38 1rwt:E (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    39 1rwt:F (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    40 1rwt:F (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    41 1rwt:F (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    42 1rwt:F (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    43 1rwt:F (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    44 1rwt:F (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    45 1rwt:F (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    46 1rwt:F (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    47 1rwt:G (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    48 1rwt:G (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    49 1rwt:G (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    50 1rwt:G (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    51 1rwt:G (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    52 1rwt:G (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    53 1rwt:G (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    54 1rwt:G (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    55 1rwt:H (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    56 1rwt:H (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    57 1rwt:H (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    58 1rwt:H (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    59 1rwt:H (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    60 1rwt:H (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    61 1rwt:H (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    62 1rwt:H (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    63 1rwt:I (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    64 1rwt:I (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    65 1rwt:I (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    66 1rwt:I (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    67 1rwt:I (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    68 1rwt:I (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    69 1rwt:I (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    70 1rwt:I (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    71 1rwt:J (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    72 1rwt:J (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    73 1rwt:J (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    74 1rwt:J (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    75 1rwt:J (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    76 1rwt:J (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    77 1rwt:J (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    78 1rwt:J (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    79 1vcr:A (9.5) BS03 CHL ? GO:0009765 ... P07371 15103124
    80 2bhw:A (2.5) BS12 CHL ? GO:0009765 ... P07371 15719016
    81 2bhw:A (2.5) BS13 CHL ? GO:0009765 ... P07371 15719016
    82 2bhw:A (2.5) BS14 CHL ? GO:0009765 ... P07371 15719016
    83 2bhw:A (2.5) BS15 CHL ? GO:0009765 ... P07371 15719016
    84 2bhw:A (2.5) BS16 CHL ? GO:0009765 ... P07371 15719016
    85 2bhw:A (2.5) BS17 CHL ? GO:0009765 ... P07371 15719016
    86 2bhw:A (2.5) BS18 CHL ? GO:0009765 ... P07371 15719016
    87 2bhw:A (2.5) BS19 CHL ? GO:0009765 ... P07371 15719016
    88 2bhw:B (2.5) BS01 CHL ? GO:0009765 ... P07371 15719016
    89 2bhw:B (2.5) BS02 CHL ? GO:0009765 ... P07371 15719016
    90 2bhw:B (2.5) BS14 CHL ? GO:0009765 ... P07371 15719016
    91 2bhw:B (2.5) BS15 CHL ? GO:0009765 ... P07371 15719016
    92 2bhw:B (2.5) BS16 CHL ? GO:0009765 ... P07371 15719016
    93 2bhw:B (2.5) BS17 CHL ? GO:0009765 ... P07371 15719016
    94 2bhw:B (2.5) BS18 CHL ? GO:0009765 ... P07371 15719016
    95 2bhw:B (2.5) BS19 CHL ? GO:0009765 ... P07371 15719016
    96 2bhw:C (2.5) BS01 CHL ? GO:0009765 ... P07371 15719016
    97 2bhw:C (2.5) BS13 CHL ? GO:0009765 ... P07371 15719016
    98 2bhw:C (2.5) BS14 CHL ? GO:0009765 ... P07371 15719016
    99 2bhw:C (2.5) BS15 CHL ? GO:0009765 ... P07371 15719016
    100 2bhw:C (2.5) BS16 CHL ? GO:0009765 ... P07371 15719016
    101 2bhw:C (2.5) BS17 CHL ? GO:0009765 ... P07371 15719016
    102 2bhw:C (2.5) BS18 CHL ? GO:0009765 ... P07371 15719016
    103 2x20:M (1.95) BS01 CHL ? GO:0016168 ... P80484 20102711
    104 3jcu:G (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    105 3jcu:G (3.2) BS05 CHL ? GO:0009416 ... P12333 27251276
    106 3jcu:G (3.2) BS06 CHL ? GO:0009416 ... P12333 27251276
    107 3jcu:G (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    108 3jcu:G (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    109 3jcu:G (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    110 3jcu:G (3.2) BS15 CHL ? GO:0009416 ... P12333 27251276
    111 3jcu:G (3.2) BS16 CHL ? GO:0009416 ... P12333 27251276
    112 3jcu:N (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    113 3jcu:N (3.2) BS02 CHL ? GO:0009416 ... P12333 27251276
    114 3jcu:N (3.2) BS03 CHL ? GO:0009416 ... P12333 27251276
    115 3jcu:N (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    116 3jcu:N (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    117 3jcu:N (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    118 3jcu:N (3.2) BS10 CHL ? GO:0009416 ... P12333 27251276
    119 3jcu:N (3.2) BS11 CHL ? GO:0009416 ... P12333 27251276
    120 3jcu:R (3.2) BS05 CHL ? GO:0009416 ... F2Z293 27251276
    121 3jcu:R (3.2) BS06 CHL ? GO:0009416 ... F2Z293 27251276
    122 3jcu:R (3.2) BS07 CHL ? GO:0009416 ... F2Z293 27251276
    123 3jcu:R (3.2) BS14 CHL ? GO:0009416 ... F2Z293 27251276
    124 3jcu:S (3.2) BS02 CHL N/A GO:0009765 ... N/A 27251276
    125 3jcu:S (3.2) BS03 CHL N/A GO:0009765 ... N/A 27251276
    126 3jcu:S (3.2) BS07 CHL N/A GO:0009765 ... N/A 27251276
    127 3jcu:S (3.2) BS08 CHL N/A GO:0009765 ... N/A 27251276
    128 3jcu:S (3.2) BS09 CHL N/A GO:0009765 ... N/A 27251276
    129 3jcu:Y (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    130 3jcu:Y (3.2) BS02 CHL ? GO:0009416 ... P12333 27251276
    131 3jcu:Y (3.2) BS03 CHL ? GO:0009416 ... P12333 27251276
    132 3jcu:Y (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    133 3jcu:Y (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    134 3jcu:Y (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    135 3jcu:Y (3.2) BS10 CHL ? GO:0009416 ... P12333 27251276
    136 3jcu:Y (3.2) BS11 CHL ? GO:0009416 ... P12333 27251276
    137 3jcu:g (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    138 3jcu:g (3.2) BS05 CHL ? GO:0009416 ... P12333 27251276
    139 3jcu:g (3.2) BS06 CHL ? GO:0009416 ... P12333 27251276
    140 3jcu:g (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    141 3jcu:g (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    142 3jcu:g (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    143 3jcu:g (3.2) BS15 CHL ? GO:0009416 ... P12333 27251276
    144 3jcu:g (3.2) BS16 CHL ? GO:0009416 ... P12333 27251276
    145 3jcu:n (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    146 3jcu:n (3.2) BS02 CHL ? GO:0009416 ... P12333 27251276
    147 3jcu:n (3.2) BS03 CHL ? GO:0009416 ... P12333 27251276
    148 3jcu:n (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    149 3jcu:n (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    150 3jcu:n (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    151 3jcu:n (3.2) BS10 CHL ? GO:0009416 ... P12333 27251276
    152 3jcu:n (3.2) BS11 CHL ? GO:0009416 ... P12333 27251276
    153 3jcu:r (3.2) BS01 CHL ? GO:0009416 ... F2Z293 27251276
    154 3jcu:r (3.2) BS06 CHL ? GO:0009416 ... F2Z293 27251276
    155 3jcu:r (3.2) BS07 CHL ? GO:0009416 ... F2Z293 27251276
    156 3jcu:r (3.2) BS08 CHL ? GO:0009416 ... F2Z293 27251276
    157 3jcu:s (3.2) BS02 CHL N/A GO:0009765 ... N/A 27251276
    158 3jcu:s (3.2) BS03 CHL N/A GO:0009765 ... N/A 27251276
    159 3jcu:s (3.2) BS07 CHL N/A GO:0009765 ... N/A 27251276
    160 3jcu:s (3.2) BS08 CHL N/A GO:0009765 ... N/A 27251276
    161 3jcu:s (3.2) BS09 CHL N/A GO:0009765 ... N/A 27251276
    162 3jcu:y (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    163 3jcu:y (3.2) BS02 CHL ? GO:0009416 ... P12333 27251276
    164 3jcu:y (3.2) BS03 CHL ? GO:0009416 ... P12333 27251276
    165 3jcu:y (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    166 3jcu:y (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    167 3jcu:y (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    168 3jcu:y (3.2) BS10 CHL ? GO:0009416 ... P12333 27251276
    169 3jcu:y (3.2) BS11 CHL ? GO:0009416 ... P12333 27251276
    170 3pl9:A (2.8) BS04 CHL ? GO:0009416 ... F2Z293 21297637
    171 3pl9:A (2.8) BS05 CHL ? GO:0009416 ... F2Z293 21297637
    172 3pl9:A (2.8) BS06 CHL ? GO:0009416 ... F2Z293 21297637
    173 3pl9:A (2.8) BS12 CHL ? GO:0009416 ... F2Z293 21297637
    174 4lcz:A (2.6) BS01 CHL ? GO:0009765 ... P12333 24482437
    175 4lcz:A (2.6) BS05 CHL ? GO:0009765 ... P12333 24482437
    176 4lcz:A (2.6) BS06 CHL ? GO:0009765 ... P12333 24482437
    177 4lcz:A (2.6) BS07 CHL ? GO:0009765 ... P12333 24482437
    178 4lcz:A (2.6) BS08 CHL ? GO:0009765 ... P12333 24482437
    179 4lcz:A (2.6) BS09 CHL ? GO:0009765 ... P12333 24482437
    180 4lcz:B (2.6) BS01 CHL ? GO:0009765 ... P12333 24482437
    181 4lcz:B (2.6) BS05 CHL ? GO:0009765 ... P12333 24482437
    182 4lcz:B (2.6) BS06 CHL ? GO:0009765 ... P12333 24482437
    183 4lcz:B (2.6) BS07 CHL ? GO:0009765 ... P12333 24482437
    184 4lcz:B (2.6) BS08 CHL ? GO:0009765 ... P12333 24482437
    185 4lcz:B (2.6) BS09 CHL ? GO:0009765 ... P12333 24482437
    186 4lcz:B (2.6) BS15 CHL ? GO:0009765 ... P12333 24482437
    187 4lcz:C (2.6) BS01 CHL ? GO:0009765 ... P12333 24482437
    188 4lcz:C (2.6) BS05 CHL ? GO:0009765 ... P12333 24482437
    189 4lcz:C (2.6) BS06 CHL ? GO:0009765 ... P12333 24482437
    190 4lcz:C (2.6) BS07 CHL ? GO:0009765 ... P12333 24482437
    191 4lcz:C (2.6) BS08 CHL ? GO:0009765 ... P12333 24482437
    192 4lcz:C (2.6) BS09 CHL ? GO:0009765 ... P12333 24482437
    193 4xk8:1 (2.8) BS02 CHL ? GO:0009765 ... Q01667 26023133
    194 4xk8:1 (2.8) BS07 CHL ? GO:0009765 ... Q01667 26023133
    195 4xk8:2 (2.8) BS01 CHL ? GO:0009765 ... Q41038 26023133
    196 4xk8:2 (2.8) BS05 CHL ? GO:0009765 ... Q41038 26023133
    197 4xk8:2 (2.8) BS06 CHL ? GO:0009765 ... Q41038 26023133
    198 4xk8:2 (2.8) BS07 CHL ? GO:0009765 ... Q41038 26023133
    199 4xk8:2 (2.8) BS14 CHL ? GO:0009765 ... Q41038 26023133
    200 4xk8:3 (2.8) BS04 CHL ? GO:0009765 ... Q32904 26023133
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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