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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1n1h:A (2.8) BS06 CH1 2.7.7.48 GO:0000166 ... P0CK31 12464184
    2 1n35:A (2.5) BS05 CH1 2.7.7.48 GO:0000166 ... P0CK31 12464184
    3 1n35:A (2.5) BS06 CH1 2.7.7.48 GO:0000166 ... P0CK31 12464184
    4 1n35:A (2.5) BS07 CH1 2.7.7.48 GO:0000166 ... P0CK31 12464184
    5 1n38:A (2.8) BS06 CH1 2.7.7.48 GO:0000166 ... P0CK31 12464184
    6 1n38:A (2.8) BS07 CH1 2.7.7.48 GO:0000166 ... P0CK31 12464184
    7 1uon:A (7.6) BS03 CH1 2.7.7.48 GO:0001172 ... Q8V1A3 14608373
    8 1uon:A (7.6) BS04 CH1 2.7.7.48 GO:0001172 ... Q8V1A3 14608373
    9 1uon:A (7.6) BS05 CH1 2.7.7.48 GO:0001172 ... Q8V1A3 14608373
    10 3avy:A (2.616) BS03 CH1 ?
    2.7.7.48    		 GO:0000166 ... P0A6N3
    P0A6P3
    P14647    		 22245970
    11 3vnv:A (2.604) BS03 CH1 ?
    2.7.7.48    		 GO:0000166 ... P0A6N3
    P0A6P3
    P14647    		 22884418
    12 6woy:D (3.0) BS06 CH1 2.7.7.6 GO:0000287 ... Q8RQE8 33542236
    13 8br0:B (2.218) BS03 CH1 4.6.1.1 GO:0000774 ... A0A9P1NJI6
    P07737    		 37747912
    14 8br0:D (2.218) BS03 CH1 4.6.1.1 GO:0000774 ... A0A9P1NJI6
    P07737    		 37747912
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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