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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 1go7:P (2.1) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    1602 1go7:P (2.1) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    1603 1go7:P (2.1) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    1604 1go7:P (2.1) BS07 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    1605 1go7:P (2.1) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    1606 1go8:P (2.0) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    1607 1go8:P (2.0) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    1608 1go8:P (2.0) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    1609 1go8:P (2.0) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    1610 1go8:P (2.0) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    1611 1go8:P (2.0) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    1612 1go8:P (2.0) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    1613 1gp7:A (2.6) BS01 CA 3.1.1.4 GO:0004623 ... P80966 12217659
    1614 1gp7:B (2.6) BS01 CA 3.1.1.4 GO:0004623 ... P80966 12217659
    1615 1gp7:C (2.6) BS01 CA 3.1.1.4 GO:0004623 ... P80966 12217659
    1616 1gpl:A (2.01) BS01 CA 3.1.1.26
    3.1.1.3    		 GO:0004806 ... P16233
    P81139    		 8939760
    1617 1gpu:A (1.86) BS01 CA 2.2.1.1 GO:0003824 ... P23254 11773632
    1618 1gpu:B (1.86) BS02 CA 2.2.1.1 GO:0003824 ... P23254 11773632
    1619 1gqm:A (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    1620 1gqm:A (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    1621 1gqm:A (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    1622 1gqm:B (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    1623 1gqm:B (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    1624 1gqm:B (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    1625 1gqm:C (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    1626 1gqm:C (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    1627 1gqm:C (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    1628 1gqm:D (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    1629 1gqm:D (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    1630 1gqm:D (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    1631 1gqm:E (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    1632 1gqm:E (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    1633 1gqm:E (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    1634 1gqm:F (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    1635 1gqm:F (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    1636 1gqm:F (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    1637 1gqm:G (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    1638 1gqm:G (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    1639 1gqm:G (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    1640 1gqm:H (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    1641 1gqm:H (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    1642 1gqm:H (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    1643 1gqm:I (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    1644 1gqm:I (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    1645 1gqm:I (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    1646 1gqm:J (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    1647 1gqm:J (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    1648 1gqm:J (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    1649 1gqm:K (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    1650 1gqm:K (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    1651 1gqm:K (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    1652 1gqm:L (2.7) BS01 CA ? GO:0002548 ... P80511 11856825
    1653 1gqm:L (2.7) BS02 CA ? GO:0002548 ... P80511 11856825
    1654 1gqm:L (2.7) BS03 CA ? GO:0002548 ... P80511 11856825
    1655 1gr3:A (2.0) BS01 CA ? N/A Q03692 11839302
    1656 1gsl:A (2.0) BS06 CA ? GO:0030246 ... P24146 8478943
    1657 1gt9:1 (1.38) BS01 CA ? GO:0004252 ... Q8RR56 12057200
    1658 1gt9:2 (1.38) BS01 CA ? GO:0004252 ... Q8RR56 12057200
    1659 1gtg:1 (2.3) BS01 CA ? GO:0004252 ... Q8RR56 12057200
    1660 1gtj:1 (1.75) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    1661 1gtj:2 (1.75) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    1662 1gtl:1 (2.8) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    1663 1gtl:2 (2.8) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    1664 1gtt:A (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 11863436
    1665 1gtt:B (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 11863436
    1666 1gtt:C (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 11863436
    1667 1gtt:D (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 11863436
    1668 1gu6:A (2.5) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    1669 1gu6:C (2.5) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    1670 1gu6:E (2.5) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    1671 1gu6:G (2.5) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    1672 1gua:B (2.0) BS01 CA 2.7.11.1 GO:0007165 ... P04049 8756332
    1673 1gui:A (1.9) BS04 CA ? GO:0016798 ... Q9WXN1 12079353
    1674 1gvk:B (0.94) BS02 CA 3.4.21.36 GO:0004252 ... P00772 11896054
    1675 1gw2:A (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    1676 1gw2:A (2.15) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    1677 1gw9:A (1.55) BS01 CA 5.3.1.5 GO:0000287 ... P24300 12037300
    1678 1gw9:A (1.55) BS02 CA 5.3.1.5 GO:0000287 ... P24300 12037300
    1679 1gwa:A (1.85) BS01 CA 3.4.21.36 GO:0004252 ... P00772 12037300
    1680 1gwo:A (2.07) BS02 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    1681 1gwo:A (2.07) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    1682 1gwt:A (1.7) BS02 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    1683 1gwt:A (1.7) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    1684 1gwu:A (1.31) BS02 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    1685 1gwu:A (1.31) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    1686 1gx2:A (2.2) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    1687 1gx2:A (2.2) BS04 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    1688 1gx2:B (2.2) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    1689 1gx2:B (2.2) BS04 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    1690 1gxd:A (3.1) BS03 CA 3.4.24.24 GO:0001525 ... P08253 12032297
    1691 1gxd:B (3.1) BS03 CA 3.4.24.24 GO:0001525 ... P08253 12032297
    1692 1gxr:A (1.65) BS01 CA ? GO:0005634 ... Q04724 12057191
    1693 1gxw:A (2.18) BS03 CA 3.4.24.27 GO:0004222 ... P00800 12454500
    1694 1gxw:A (2.18) BS04 CA 3.4.24.27 GO:0004222 ... P00800 12454500
    1695 1gxw:A (2.18) BS05 CA 3.4.24.27 GO:0004222 ... P00800 12454500
    1696 1gxw:A (2.18) BS06 CA 3.4.24.27 GO:0004222 ... P00800 12454500
    1697 1gyk:A (2.2) BS01 CA ? GO:0001849 ... P02743 12126626
    1698 1gyk:A (2.2) BS02 CA ? GO:0001849 ... P02743 12126626
    1699 1gyk:B (2.2) BS01 CA ? GO:0001849 ... P02743 12126626
    1700 1gyk:B (2.2) BS02 CA ? GO:0001849 ... P02743 12126626
    1701 1gyk:C (2.2) BS01 CA ? GO:0001849 ... P02743 12126626
    1702 1gyk:C (2.2) BS02 CA ? GO:0001849 ... P02743 12126626
    1703 1gyk:D (2.2) BS01 CA ? GO:0001849 ... P02743 12126626
    1704 1gyk:D (2.2) BS02 CA ? GO:0001849 ... P02743 12126626
    1705 1gyk:E (2.2) BS01 CA ? GO:0001849 ... P02743 12126626
    1706 1gz9:A (1.7) BS05 CA ? GO:0030246 ... P83410 12139934
    1707 1gza:A (2.06) BS01 CA 1.11.1.7 GO:0000302 ... P28313 9038188
    1708 1gza:A (2.06) BS02 CA 1.11.1.7 GO:0000302 ... P28313 9038188
    1709 1gzb:A (1.8) BS01 CA 1.11.1.7 GO:0000302 ... P28313 8557120
    1710 1gzb:A (1.8) BS02 CA 1.11.1.7 GO:0000302 ... P28313 8557120
    1711 1gzc:A (1.58) BS04 CA ? GO:0030246 ... P83410 12139934
    1712 1gzt:A (1.3) BS02 CA ? GO:0030246 ... Q9HYN5 12415289
    1713 1gzt:A (1.3) BS03 CA ? GO:0030246 ... Q9HYN5 12415289
    1714 1gzt:B (1.3) BS02 CA ? GO:0030246 ... Q9HYN5 12415289
    1715 1gzt:B (1.3) BS03 CA ? GO:0030246 ... Q9HYN5 12415289
    1716 1gzt:C (1.3) BS02 CA ? GO:0030246 ... Q9HYN5 12415289
    1717 1gzt:C (1.3) BS03 CA ? GO:0030246 ... Q9HYN5 12415289
    1718 1gzt:D (1.3) BS02 CA ? GO:0030246 ... Q9HYN5 12415289
    1719 1gzt:D (1.3) BS03 CA ? GO:0030246 ... Q9HYN5 12415289
    1720 1h0h:A (1.8) BS04 CA 1.17.1.9 GO:0008863 ... Q934F5 12220497
    1721 1h0h:K (1.8) BS04 CA 1.17.1.9 GO:0008863 ... Q934F5 12220497
    1722 1h1a:A (1.75) BS01 CA 3.2.1.8 GO:0004553 ... Q8J1V6 12653995
    1723 1h1a:B (1.75) BS01 CA 3.2.1.8 GO:0004553 ... Q8J1V6 12653995
    1724 1h1v:G (2.99) BS01 CA ? GO:0051015 ... P06396 12460571
    1725 1h1v:G (2.99) BS02 CA ? GO:0051015 ... P06396 12460571
    1726 1h1v:G (2.99) BS03 CA ? GO:0051015 ... P06396 12460571
    1727 1h1v:G (2.99) BS04 CA ? GO:0051015 ... P06396 12460571
    1728 1h2g:B (2.0) BS01 CA 3.5.1.11 GO:0016787 ... P06875 12511194
    1729 1h30:A (2.2) BS01 CA ? N/A Q14393 12218057
    1730 1h3g:A (2.1) BS01 CA 3.2.1.54 GO:0005975 ... Q8KKG0 12752453
    1731 1h3g:A (2.1) BS02 CA 3.2.1.54 GO:0005975 ... Q8KKG0 12752453
    1732 1h3g:B (2.1) BS01 CA 3.2.1.54 GO:0005975 ... Q8KKG0 12752453
    1733 1h3g:B (2.1) BS02 CA 3.2.1.54 GO:0005975 ... Q8KKG0 12752453
    1734 1h3g:B (2.1) BS03 CA 3.2.1.54 GO:0005975 ... Q8KKG0 12752453
    1735 1h3j:A (2.0) BS02 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    1736 1h3j:A (2.0) BS03 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    1737 1h3j:B (2.0) BS02 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    1738 1h3j:B (2.0) BS03 CA 1.11.1.7 GO:0000302 ... P28314 12777760
    1739 1h4b:A (-1.00) BS01 CA ? GO:0005509 ... Q39419 15037075
    1740 1h4b:A (-1.00) BS02 CA ? GO:0005509 ... Q39419 15037075
    1741 1h4i:A (1.94) BS02 CA 1.1.2.7 GO:0005509 ... P16027 7735834
    1742 1h4i:C (1.94) BS02 CA 1.1.2.7 GO:0005509 ... P16027 7735834
    1743 1h4j:A (3.0) BS02 CA 1.1.2.7 GO:0005509 ... P16027 11502173
    1744 1h4j:C (3.0) BS02 CA 1.1.2.7 GO:0005509 ... P16027 11502173
    1745 1h4j:E (3.0) BS02 CA 1.1.2.7 GO:0005509 ... P16027 11502173
    1746 1h4j:G (3.0) BS02 CA 1.1.2.7 GO:0005509 ... P16027 11502173
    1747 1h4w:A (1.7) BS02 CA 3.4.21.4 GO:0004252 ... P35030 11827488
    1748 1h55:A (1.61) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1749 1h55:A (1.61) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1750 1h57:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1751 1h57:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1752 1h58:A (1.7) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1753 1h58:A (1.7) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1754 1h5a:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1755 1h5a:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1756 1h5c:A (1.62) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1757 1h5c:A (1.62) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1758 1h5d:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1759 1h5d:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1760 1h5e:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1761 1h5e:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1762 1h5f:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1763 1h5f:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1764 1h5g:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1765 1h5g:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1766 1h5h:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1767 1h5h:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1768 1h5i:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1769 1h5i:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1770 1h5j:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1771 1h5j:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1772 1h5k:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1773 1h5k:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1774 1h5l:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1775 1h5l:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1776 1h5m:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1777 1h5m:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    1778 1h5v:A (1.1) BS05 CA 3.2.1.4 GO:0000272 ... O85465 11679762
    1779 1h5v:A (1.1) BS06 CA 3.2.1.4 GO:0000272 ... O85465 11679762
    1780 1h5v:A (1.1) BS07 CA 3.2.1.4 GO:0000272 ... O85465 11679762
    1781 1h6l:A (1.8) BS01 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    1782 1h6l:A (1.8) BS02 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    1783 1h6l:A (1.8) BS03 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    1784 1h6l:A (1.8) BS04 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    1785 1h6l:A (1.8) BS05 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    1786 1h6l:A (1.8) BS06 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    1787 1h6l:A (1.8) BS07 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    1788 1h6x:A (2.25) BS01 CA 3.2.1.8 GO:0016798 ... P51584 11478884
    1789 1h6y:A (2.2) BS01 CA 3.2.1.8 GO:0016798 ... P51584 11478884
    1790 1h6y:B (2.2) BS01 CA 3.2.1.8 GO:0016798 ... P51584 11478884
    1791 1h71:P (2.1) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1792 1h71:P (2.1) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1793 1h71:P (2.1) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1794 1h71:P (2.1) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1795 1h71:P (2.1) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1796 1h71:P (2.1) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1797 1h71:P (2.1) BS07 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1798 1h71:P (2.1) BS08 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1799 1h80:A (1.6) BS01 CA 3.2.1.157 GO:0000272 ... Q9F5I8 11493601
    1800 1h80:A (1.6) BS02 CA 3.2.1.157 GO:0000272 ... Q9F5I8 11493601
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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