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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1401 1fzf:F (2.7) BS02 CA ? GO:0005102 ... P02679 10074346
    1402 1fzg:B (2.5) BS02 CA ? GO:0005102 ... P02675 10074346
    1403 1fzg:B (2.5) BS03 CA ? GO:0005102 ... P02675 10074346
    1404 1fzg:C (2.5) BS02 CA ? GO:0005102 ... P02679 10074346
    1405 1fzg:C (2.5) BS03 CA ? GO:0005102 ... P02679 10074346
    1406 1fzg:E (2.5) BS02 CA ? GO:0005102 ... P02675 10074346
    1407 1fzg:E (2.5) BS03 CA ? GO:0005102 ... P02675 10074346
    1408 1fzg:F (2.5) BS02 CA ? GO:0005102 ... P02679 10074346
    1409 1fzg:F (2.5) BS03 CA ? GO:0005102 ... P02679 10074346
    1410 1fzh:B (2.6) BS03 CA 1.14.13.25 GO:0004497 ... P22869 11297413
    1411 1g05:A (2.45) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    1412 1g05:A (2.45) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    1413 1g05:A (2.45) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    1414 1g05:B (2.45) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    1415 1g05:B (2.45) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    1416 1g05:B (2.45) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    1417 1g0h:A (2.3) BS01 CA 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    1418 1g0h:A (2.3) BS02 CA 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    1419 1g0h:B (2.3) BS01 CA 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    1420 1g0h:B (2.3) BS02 CA 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    1421 1g1i:A (2.0) BS01 CA ? N/A P04512 11124032
    1422 1g1q:A (2.4) BS01 CA ? N/A P16109 11081633
    1423 1g1q:B (2.4) BS01 CA ? N/A P16109 11081633
    1424 1g1q:C (2.4) BS01 CA ? N/A P16109 11081633
    1425 1g1q:D (2.4) BS01 CA ? N/A P16109 11081633
    1426 1g1r:A (3.4) BS03 CA ? N/A P16109 11081633
    1427 1g1r:B (3.4) BS04 CA ? N/A P16109 11081633
    1428 1g1r:C (3.4) BS01 CA ? N/A P16109 11081633
    1429 1g1r:D (3.4) BS03 CA ? N/A P16109 11081633
    1430 1g1t:A (1.5) BS04 CA ? N/A P16581 11081633
    1431 1g20:B (2.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    1432 1g20:B (2.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    1433 1g20:D (2.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    1434 1g20:D (2.2) BS02 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    1435 1g21:B (3.0) BS02 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    1436 1g21:B (3.0) BS03 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    1437 1g21:D (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    1438 1g21:D (3.0) BS02 CA 1.18.6.1 GO:0005524 ... P07329 11170380
    1439 1g2l:A (1.9) BS01 CA 3.4.21.6 GO:0004252 ... P00742 11342132
    1440 1g2m:A (3.02) BS01 CA 3.4.21.6 GO:0004252 ... P00742 11342132
    1441 1g33:A (1.44) BS01 CA ? GO:0005509 ... P02625 11562941
    1442 1g33:A (1.44) BS02 CA ? GO:0005509 ... P02625 11562941
    1443 1g36:A (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11342132
    1444 1g3b:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11152605
    1445 1g3c:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11152605
    1446 1g3d:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11152605
    1447 1g3e:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11152605
    1448 1g42:A (1.8) BS01 CA 3.8.1.5 GO:0003824 ... D4Z2G1 11939779
    1449 1g42:A (1.8) BS02 CA 3.8.1.5 GO:0003824 ... D4Z2G1 11939779
    1450 1g43:A (2.2) BS01 CA ? GO:0005975 ... Q45996 11092922
    1451 1g49:A (1.9) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11150165
    1452 1g49:A (1.9) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11150165
    1453 1g49:A (1.9) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11150165
    1454 1g49:B (1.9) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11150165
    1455 1g49:B (1.9) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11150165
    1456 1g49:B (1.9) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11150165
    1457 1g4h:A (1.8) BS01 CA 3.8.1.5 GO:0003824 ... D4Z2G1 11939779
    1458 1g4i:A (0.97) BS01 CA 3.1.1.4 GO:0002227 ... P00593 11264580
    1459 1g4k:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    1460 1g4k:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    1461 1g4k:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    1462 1g4k:B (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    1463 1g4k:B (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    1464 1g4k:B (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    1465 1g4k:C (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    1466 1g4k:C (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    1467 1g4k:C (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11316871
    1468 1g4y:R (1.6) BS01 CA ? GO:0000086 ... P0DP29 11323678
    1469 1g4y:R (1.6) BS02 CA ? GO:0000086 ... P0DP29 11323678
    1470 1g5c:F (2.1) BS03 CA 4.2.1.1 GO:0004089 ... Q50565 11096105
    1471 1g5f:A (1.8) BS01 CA 3.8.1.5 GO:0003824 ... D4Z2G1 11939779
    1472 1g5n:A (1.9) BS07 CA ? GO:0001786 ... P14668 11342135
    1473 1g5n:A (1.9) BS08 CA ? GO:0001786 ... P14668 11342135
    1474 1g5n:A (1.9) BS09 CA ? GO:0001786 ... P14668 11342135
    1475 1g5n:A (1.9) BS10 CA ? GO:0001786 ... P14668 11342135
    1476 1g5n:A (1.9) BS11 CA ? GO:0001786 ... P14668 11342135
    1477 1g5n:A (1.9) BS12 CA ? GO:0001786 ... P14668 11342135
    1478 1g5n:A (1.9) BS13 CA ? GO:0001786 ... P14668 11342135
    1479 1g5n:A (1.9) BS14 CA ? GO:0001786 ... P14668 11342135
    1480 1g5n:A (1.9) BS15 CA ? GO:0001786 ... P14668 11342135
    1481 1g72:A (1.9) BS01 CA 1.1.2.7 GO:0005509 ... P38539 11149955
    1482 1g72:C (1.9) BS01 CA 1.1.2.7 GO:0005509 ... P38539 11149955
    1483 1g7y:A (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    1484 1g7y:B (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    1485 1g7y:C (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    1486 1g7y:D (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    1487 1g7y:E (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    1488 1g7y:F (2.5) BS01 CA ? GO:0005537 ... P19588 11491289
    1489 1g87:A (1.6) BS01 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    1490 1g87:A (1.6) BS02 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    1491 1g87:B (1.6) BS01 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    1492 1g87:B (1.6) BS02 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    1493 1g8i:A (1.9) BS01 CA ? GO:0005245 ... P62166 11092894
    1494 1g8i:A (1.9) BS02 CA ? GO:0005245 ... P62166 11092894
    1495 1g8i:A (1.9) BS03 CA ? GO:0005245 ... P62166 11092894
    1496 1g8i:B (1.9) BS01 CA ? GO:0005245 ... P62166 11092894
    1497 1g8i:B (1.9) BS02 CA ? GO:0005245 ... P62166 11092894
    1498 1g8i:B (1.9) BS03 CA ? GO:0005245 ... P62166 11092894
    1499 1g8k:A (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    1500 1g8k:C (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    1501 1g8k:E (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    1502 1g8k:G (1.64) BS01 CA 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    1503 1g8w:A (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    1504 1g8w:B (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    1505 1g8w:C (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    1506 1g8w:D (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    1507 1g94:A (1.74) BS05 CA 3.2.1.1 GO:0003824 ... P29957 11914073
    1508 1g9f:A (2.5) BS03 CA ? GO:0030246 ... P05046 11491289
    1509 1g9g:A (1.9) BS01 CA 3.2.1.4 GO:0004553 ... P37698 18035374
    1510 1g9h:A (1.8) BS03 CA 3.2.1.1 GO:0003824 ... P29957 11914073
    1511 1g9i:E (2.2) BS02 CA 3.4.21.4 GO:0004175 ... P00760 11257512
    1512 1g9j:A (1.9) BS08 CA 3.2.1.4 GO:0004553 ... P37698 18035374
    1513 1g9j:A (1.9) BS09 CA 3.2.1.4 GO:0004553 ... P37698 18035374
    1514 1g9k:A (1.96) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1515 1g9k:A (1.96) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1516 1g9k:A (1.96) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1517 1g9k:A (1.96) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1518 1g9k:A (1.96) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1519 1g9k:A (1.96) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1520 1g9k:A (1.96) BS07 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    1521 1g9u:A (2.35) BS01 CA ? GO:0005576 ... P17778 11575934
    1522 1g9y:B (2.05) BS03 CA 3.1.-.- GO:0004519 ... P05725 11276249
    1523 1ga1:A (1.4) BS02 CA 3.4.21.100 GO:0004252 ... P42790 11173470
    1524 1ga2:A (1.7) BS05 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    1525 1ga2:A (1.7) BS06 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    1526 1ga2:B (1.7) BS03 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    1527 1ga2:B (1.7) BS04 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    1528 1ga4:A (1.4) BS02 CA 3.4.21.100 GO:0004252 ... P42790 11323721
    1529 1ga6:A (1.0) BS02 CA 3.4.21.100 GO:0004252 ... P42790 11323721
    1530 1gbg:A (1.8) BS01 CA 3.2.1.73 GO:0004553 ... P27051 7589539
    1531 1gbt:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 2252895
    1532 1gca:A (1.7) BS02 CA ? GO:0006935 ... P23905 8240551
    1533 1gcg:A (1.9) BS01 CA ? GO:0006935 ... P23905 8132630
    1534 1gci:A (0.78) BS01 CA 3.4.21.62 GO:0004252 ... P29600 9753430
    1535 1gci:A (0.78) BS02 CA 3.4.21.62 GO:0004252 ... P29600 9753430
    1536 1gcy:A (1.6) BS01 CA 3.2.1.60 GO:0004556 ... P13507 11272837
    1537 1gcy:A (1.6) BS02 CA 3.2.1.60 GO:0004556 ... P13507 11272837
    1538 1gen:A (2.15) BS01 CA 3.4.24.24 N/A P08253 7583664
    1539 1ggz:A (1.5) BS01 CA ? GO:0005509 ... P27482 12067719
    1540 1ggz:A (1.5) BS02 CA ? GO:0005509 ... P27482 12067719
    1541 1ggz:A (1.5) BS03 CA ? GO:0005509 ... P27482 12067719
    1542 1ggz:A (1.5) BS04 CA ? GO:0005509 ... P27482 12067719
    1543 1gh4:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 12460575
    1544 1gh4:A (1.9) BS02 CA 3.1.1.4 GO:0002227 ... P00593 12460575
    1545 1ghz:A (1.39) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    1546 1gi0:A (1.42) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    1547 1gi1:A (1.42) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    1548 1gi2:A (1.38) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    1549 1gi3:A (1.44) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    1550 1gi4:A (1.37) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    1551 1gi5:A (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    1552 1gi6:A (1.49) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11292354
    1553 1gic:A (2.0) BS03 CA ? GO:0030246 ... P02866 15299735
    1554 1gic:B (2.0) BS03 CA ? GO:0030246 ... P02866 15299735
    1555 1gj6:A (1.5) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11731301
    1556 1gk9:B (1.3) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    1557 1gkb:A (1.56) BS02 CA ? GO:0030246 ... P02866 11976483
    1558 1gkb:B (1.56) BS02 CA ? GO:0030246 ... P02866 11976483
    1559 1gkc:A (2.3) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1560 1gkc:A (2.3) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1561 1gkc:A (2.3) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1562 1gkc:A (2.3) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1563 1gkc:B (2.3) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1564 1gkc:B (2.3) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1565 1gkc:B (2.3) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1566 1gkc:B (2.3) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1567 1gkd:A (2.1) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1568 1gkd:A (2.1) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1569 1gkd:A (2.1) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1570 1gkd:A (2.1) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1571 1gkd:B (2.1) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1572 1gkd:B (2.1) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1573 1gkd:B (2.1) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1574 1gkd:B (2.1) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    1575 1gkf:B (1.41) BS12 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    1576 1glg:A (2.0) BS02 CA ? GO:0005509 ... P0AEE5 8161535
    1577 1gm7:B (1.45) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    1578 1gm8:B (2.0) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    1579 1gm9:B (1.8) BS10 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    1580 1gmm:A (2.0) BS01 CA 3.2.1.8 GO:0030246 ... O52780 11673472
    1581 1gn1:F (2.8) BS01 CA ? GO:0005524 ... P80318 12083524
    1582 1gn1:H (2.8) BS01 CA ? GO:0005524 ... P80318 12083524
    1583 1gnh:A (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    1584 1gnh:A (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    1585 1gnh:B (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    1586 1gnh:B (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    1587 1gnh:C (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    1588 1gnh:C (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    1589 1gnh:E (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    1590 1gnh:E (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    1591 1gnh:F (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    1592 1gnh:F (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    1593 1gnh:G (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    1594 1gnh:G (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    1595 1gnh:H (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    1596 1gnh:H (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    1597 1gnh:I (3.0) BS01 CA ? GO:0001849 ... P02741 8599761
    1598 1gnh:I (3.0) BS02 CA ? GO:0001849 ... P02741 8599761
    1599 1go7:P (2.1) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11445573
    1600 1go7:P (2.1) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11445573

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218