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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13801 3l2y:Q (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    13802 3l2y:R (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    13803 3l2y:R (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    13804 3l2y:S (2.7) BS01 CA ? GO:0001849 ... P02741 21360619
    13805 3l2y:S (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    13806 3l2y:T (2.7) BS02 CA ? GO:0001849 ... P02741 21360619
    13807 3l2y:T (2.7) BS03 CA ? GO:0001849 ... P02741 21360619
    13808 3l30:A (2.4) BS01 CA 3.1.1.4 GO:0002446 ... P00592 N/A
    13809 3l33:A (2.48) BS01 CA 3.4.21.4 GO:0004252 ... P35030 20861008
    13810 3l33:B (2.48) BS01 CA 3.4.21.4 GO:0004252 ... P35030 20861008
    13811 3l33:C (2.48) BS01 CA 3.4.21.4 GO:0004252 ... P35030 20861008
    13812 3l33:D (2.48) BS01 CA 3.4.21.4 GO:0004252 ... P35030 20861008
    13813 3l3t:A (2.378) BS01 CA 3.4.21.4 GO:0004252 ... P35030 20861008
    13814 3l3t:B (2.378) BS01 CA 3.4.21.4 GO:0004252 ... P35030 20861008
    13815 3l3t:C (2.378) BS01 CA 3.4.21.4 GO:0004252 ... P35030 20861008
    13816 3l3t:D (2.378) BS01 CA 3.4.21.4 GO:0004252 ... P35030 20861008
    13817 3l4m:A (2.02) BS01 CA 1.-.-.- GO:0004130 ... Q51658 20223990
    13818 3l4m:B (2.02) BS01 CA 1.-.-.- GO:0004130 ... Q51658 20223990
    13819 3l4o:A (2.046) BS01 CA 1.-.-.- GO:0004130 ... Q51658 20223990
    13820 3l4o:B (2.046) BS01 CA 1.-.-.- GO:0004130 ... Q51658 20223990
    13821 3l7f:D (2.6) BS01 CA N/A N/A N/A 20226193
    13822 3l8y:A (2.02) BS03 CA 3.6.5.2 GO:0003924 ... P01112 20401883
    13823 3l8y:A (2.02) BS04 CA 3.6.5.2 GO:0003924 ... P01112 20401883
    13824 3l8z:A (1.44) BS03 CA 3.6.5.2 GO:0003924 ... P01112 20401883
    13825 3l8z:A (1.44) BS04 CA 3.6.5.2 GO:0003924 ... P01112 20401883
    13826 3l95:X (2.19) BS01 CA ? GO:0007219 ... P46531 20393564
    13827 3l95:X (2.19) BS02 CA ? GO:0007219 ... P46531 20393564
    13828 3l95:X (2.19) BS03 CA ? GO:0007219 ... P46531 20393564
    13829 3l95:Y (2.19) BS01 CA ? GO:0007219 ... P46531 20393564
    13830 3l95:Y (2.19) BS02 CA ? GO:0007219 ... P46531 20393564
    13831 3l95:Y (2.19) BS03 CA ? GO:0007219 ... P46531 20393564
    13832 3l9i:C (2.2) BS01 CA ? GO:0005509 ... P62152 N/A
    13833 3l9i:C (2.2) BS02 CA ? GO:0005509 ... P62152 N/A
    13834 3l9i:C (2.2) BS03 CA ? GO:0005509 ... P62152 N/A
    13835 3l9i:C (2.2) BS04 CA ? GO:0005509 ... P62152 N/A
    13836 3la6:E (3.2) BS02 CA 2.7.10.- GO:0045226 ... P76387 20633230
    13837 3la6:M (3.2) BS02 CA 2.7.10.- GO:0045226 ... P76387 20633230
    13838 3lag:A (1.15) BS01 CA ? GO:0046872 ... Q6N272 N/A
    13839 3lbh:A (1.85) BS02 CA 3.6.5.2 GO:0003924 ... P01112 20194776
    13840 3lbh:A (1.85) BS04 CA 3.6.5.2 GO:0003924 ... P01112 20194776
    13841 3lbi:A (2.087) BS02 CA 3.6.5.2 GO:0003924 ... P01112 20194776
    13842 3lbi:A (2.087) BS04 CA 3.6.5.2 GO:0003924 ... P01112 20194776
    13843 3lbn:A (1.862) BS02 CA 3.6.5.2 GO:0003924 ... P01112 20194776
    13844 3lc3:A (1.9) BS03 CA 3.4.21.22 GO:0004252 ... P00740 20121198
    13845 3lc3:C (1.9) BS03 CA 3.4.21.22 GO:0004252 ... P00740 20121198
    13846 3lc5:A (2.62) BS01 CA 3.4.21.22 GO:0004252 ... P00740 20121197
    13847 3lcp:A (2.45) BS01 CA ? GO:0016020 ... P49257 20138881
    13848 3lcp:A (2.45) BS02 CA ? GO:0016020 ... P49257 20138881
    13849 3lcp:B (2.45) BS01 CA ? GO:0016020 ... P49257 20138881
    13850 3lcp:B (2.45) BS02 CA ? GO:0016020 ... P49257 20138881
    13851 3lcp:C (2.45) BS01 CA ? GO:0005509 ... Q8NI22 20138881
    13852 3lcp:C (2.45) BS02 CA ? GO:0005509 ... Q8NI22 20138881
    13853 3lcp:D (2.45) BS01 CA ? GO:0005509 ... Q8NI22 20138881
    13854 3lcp:D (2.45) BS02 CA ? GO:0005509 ... Q8NI22 20138881
    13855 3ldy:A (1.97) BS05 CA ? GO:0046872 ... D5MNX7 20541511
    13856 3le0:A (1.91) BS01 CA ? N/A Q2PHL4 22325774
    13857 3leg:A (2.01) BS02 CA ? N/A Q2PHL4 22325774
    13858 3lei:A (1.9) BS02 CA ? N/A Q2PHL4 22325774
    13859 3lek:A (2.0) BS02 CA ? N/A Q2PHL4 22325774
    13860 3lez:A (1.25) BS01 CA 3.5.2.6 GO:0008800 ... Q8EMP8 20000704
    13861 3lez:A (1.25) BS02 CA 3.5.2.6 GO:0008800 ... Q8EMP8 20000704
    13862 3lez:A (1.25) BS03 CA 3.5.2.6 GO:0008800 ... Q8EMP8 20000704
    13863 3lez:A (1.25) BS04 CA 3.5.2.6 GO:0008800 ... Q8EMP8 20000704
    13864 3lez:A (1.25) BS05 CA 3.5.2.6 GO:0008800 ... Q8EMP8 20000704
    13865 3lg1:A (1.95) BS10 CA 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    13866 3lg1:A (1.95) BS11 CA 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    13867 3lg1:B (1.95) BS10 CA 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    13868 3lg1:B (1.95) BS11 CA 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    13869 3lgq:A (1.8) BS10 CA 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    13870 3lgq:B (1.8) BS10 CA 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    13871 3lhm:A (1.8) BS01 CA 3.2.1.17 GO:0003796 ... P61626 1939116
    13872 3li3:A (1.66) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 20206152
    13873 3li3:A (1.66) BS02 CA 3.8.2.2 GO:0005509 ... Q7SIG4 20206152
    13874 3li4:A (1.35) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 20206152
    13875 3li4:A (1.35) BS02 CA 3.8.2.2 GO:0005509 ... Q7SIG4 20206152
    13876 3li5:A (1.36) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 20206152
    13877 3li6:A (2.502) BS01 CA ? GO:0005509 ... P38505 20550906
    13878 3li6:A (2.502) BS02 CA ? GO:0005509 ... P38505 20550906
    13879 3li6:D (2.502) BS01 CA ? GO:0005509 ... P38505 20550906
    13880 3li6:D (2.502) BS02 CA ? GO:0005509 ... P38505 20550906
    13881 3li6:G (2.502) BS01 CA ? GO:0005509 ... P38505 20550906
    13882 3li6:G (2.502) BS02 CA ? GO:0005509 ... P38505 20550906
    13883 3li6:J (2.502) BS01 CA ? GO:0005509 ... P38505 20550906
    13884 3li6:J (2.502) BS02 CA ? GO:0005509 ... P38505 20550906
    13885 3lij:A (1.9) BS01 CA 2.7.1.- GO:0004672 ... Q5CS01 N/A
    13886 3lij:A (1.9) BS02 CA 2.7.1.- GO:0004672 ... Q5CS01 N/A
    13887 3lij:A (1.9) BS03 CA 2.7.1.- GO:0004672 ... Q5CS01 N/A
    13888 3lij:A (1.9) BS04 CA 2.7.1.- GO:0004672 ... Q5CS01 N/A
    13889 3lik:A (1.8) BS03 CA 3.4.24.65 GO:0004222 ... P39900 20817735
    13890 3lik:A (1.8) BS04 CA 3.4.24.65 GO:0004222 ... P39900 20817735
    13891 3lik:A (1.8) BS05 CA 3.4.24.65 GO:0004222 ... P39900 20817735
    13892 3lil:A (1.8) BS03 CA 3.4.24.65 GO:0004222 ... P39900 20817735
    13893 3lil:A (1.8) BS04 CA 3.4.24.65 GO:0004222 ... P39900 20817735
    13894 3lil:A (1.8) BS05 CA 3.4.24.65 GO:0004222 ... P39900 20817735
    13895 3lip:A (2.0) BS01 CA 3.1.1.3 GO:0004806 ... P22088 9032074
    13896 3lir:A (1.9) BS03 CA 3.4.24.65 GO:0004222 ... P39900 20817735
    13897 3lir:A (1.9) BS04 CA 3.4.24.65 GO:0004222 ... P39900 20817735
    13898 3lir:A (1.9) BS05 CA 3.4.24.65 GO:0004222 ... P39900 20817735
    13899 3liw:A (2.22) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12437104
    13900 3liw:A (2.22) BS02 CA 3.4.21.6 GO:0004252 ... P00742 12437104
    13901 3ljg:A (1.313) BS03 CA 3.4.24.65 GO:0004222 ... P39900 20817735
    13902 3ljg:A (1.313) BS04 CA 3.4.24.65 GO:0004222 ... P39900 20817735
    13903 3ljg:A (1.313) BS05 CA 3.4.24.65 GO:0004222 ... P39900 20817735
    13904 3ljj:A (1.55) BS02 CA 3.4.21.4 GO:0004175 ... P00760 21111747
    13905 3ljo:A (1.5) BS02 CA 3.4.21.4 GO:0004175 ... P00760 21111747
    13906 3ljt:A (1.6) BS03 CA 3.4.24.- GO:0004222 ... Q9UNA0 21370305
    13907 3ljt:A (1.6) BS04 CA 3.4.24.- GO:0004222 ... Q9UNA0 21370305
    13908 3ljt:A (1.6) BS05 CA 3.4.24.- GO:0004222 ... Q9UNA0 21370305
    13909 3ljz:A (2.0) BS01 CA 3.4.24.- GO:0004222 ... P45452 21370305
    13910 3ljz:A (2.0) BS02 CA 3.4.24.- GO:0004222 ... P45452 21370305
    13911 3ljz:B (2.0) BS01 CA 3.4.24.- GO:0004222 ... P45452 21370305
    13912 3ljz:B (2.0) BS02 CA 3.4.24.- GO:0004222 ... P45452 21370305
    13913 3ljz:C (2.0) BS01 CA 3.4.24.- GO:0004222 ... P45452 21370305
    13914 3ljz:C (2.0) BS02 CA 3.4.24.- GO:0004222 ... P45452 21370305
    13915 3ljz:D (2.0) BS01 CA 3.4.24.- GO:0004222 ... P45452 21370305
    13916 3ljz:D (2.0) BS02 CA 3.4.24.- GO:0004222 ... P45452 21370305
    13917 3lk0:A (2.04) BS01 CA ? GO:0005509 ... P02638 21132089
    13918 3lk0:A (2.04) BS02 CA ? GO:0005509 ... P02638 21132089
    13919 3lk0:B (2.04) BS01 CA ? GO:0005509 ... P02638 21132089
    13920 3lk0:B (2.04) BS02 CA ? GO:0005509 ... P02638 21132089
    13921 3lk0:C (2.04) BS01 CA ? GO:0005509 ... P02638 21132089
    13922 3lk0:C (2.04) BS02 CA ? GO:0005509 ... P02638 21132089
    13923 3lk0:D (2.04) BS01 CA ? GO:0005509 ... P02638 21132089
    13924 3lk0:D (2.04) BS02 CA ? GO:0005509 ... P02638 21132089
    13925 3lk1:A (1.79) BS01 CA ? GO:0005509 ... P02638 21132089
    13926 3lk1:A (1.79) BS02 CA ? GO:0005509 ... P02638 21132089
    13927 3lk8:A (1.8) BS03 CA 3.4.24.65 GO:0004222 ... P39900 17269766
    13928 3lk8:A (1.8) BS04 CA 3.4.24.65 GO:0004222 ... P39900 17269766
    13929 3lk8:A (1.8) BS05 CA 3.4.24.65 GO:0004222 ... P39900 17269766
    13930 3lka:A (1.8) BS03 CA 3.4.24.65 GO:0004222 ... P39900 20415416
    13931 3lka:A (1.8) BS04 CA 3.4.24.65 GO:0004222 ... P39900 20415416
    13932 3lka:A (1.8) BS05 CA 3.4.24.65 GO:0004222 ... P39900 20415416
    13933 3ll8:B (2.0) BS01 CA ? GO:0001569 ... P63098 22343722
    13934 3ll8:B (2.0) BS02 CA ? GO:0001569 ... P63098 22343722
    13935 3ll8:B (2.0) BS03 CA ? GO:0001569 ... P63098 22343722
    13936 3ll8:B (2.0) BS04 CA ? GO:0001569 ... P63098 22343722
    13937 3ll8:D (2.0) BS01 CA ? GO:0001569 ... P63098 22343722
    13938 3ll8:D (2.0) BS02 CA ? GO:0001569 ... P63098 22343722
    13939 3ll8:D (2.0) BS03 CA ? GO:0001569 ... P63098 22343722
    13940 3ll8:D (2.0) BS04 CA ? GO:0001569 ... P63098 22343722
    13941 3lle:A (1.85) BS01 CA ? GO:0005509 ... P02638 21132089
    13942 3lle:A (1.85) BS02 CA ? GO:0005509 ... P02638 21132089
    13943 3lle:B (1.85) BS01 CA ? GO:0005509 ... P02638 21132089
    13944 3lle:B (1.85) BS02 CA ? GO:0005509 ... P02638 21132089
    13945 3lll:A (3.3) BS01 CA ? N/A Q9WVE8 20471395
    13946 3lll:B (3.3) BS01 CA ? N/A Q9WVE8 20471395
    13947 3lmw:A (2.6) BS01 CA 3.2.1.157 GO:0000272 ... Q9F5I8 20681629
    13948 3lnd:A (2.82) BS01 CA ? GO:0005509 ... P97326 20190754
    13949 3lnd:A (2.82) BS02 CA ? GO:0005509 ... P97326 20190754
    13950 3lnd:A (2.82) BS03 CA ? GO:0005509 ... P97326 20190754
    13951 3lnd:B (2.82) BS01 CA ? GO:0005509 ... P97326 20190754
    13952 3lnd:B (2.82) BS02 CA ? GO:0005509 ... P97326 20190754
    13953 3lnd:B (2.82) BS03 CA ? GO:0005509 ... P97326 20190754
    13954 3lnd:C (2.82) BS01 CA ? GO:0005509 ... P97326 20190754
    13955 3lnd:C (2.82) BS02 CA ? GO:0005509 ... P97326 20190754
    13956 3lnd:C (2.82) BS03 CA ? GO:0005509 ... P97326 20190754
    13957 3lnd:D (2.82) BS01 CA ? GO:0005509 ... P97326 20190754
    13958 3lnd:D (2.82) BS02 CA ? GO:0005509 ... P97326 20190754
    13959 3lnd:D (2.82) BS03 CA ? GO:0005509 ... P97326 20190754
    13960 3lne:A (2.0) BS01 CA ? GO:0005509 ... P09803 20190754
    13961 3lne:A (2.0) BS02 CA ? GO:0005509 ... P09803 20190754
    13962 3lne:A (2.0) BS03 CA ? GO:0005509 ... P09803 20190754
    13963 3lnf:A (2.5) BS01 CA ? GO:0005509 ... P09803 20190754
    13964 3lnf:A (2.5) BS02 CA ? GO:0005509 ... P09803 20190754
    13965 3lnf:A (2.5) BS03 CA ? GO:0005509 ... P09803 20190754
    13966 3lnf:B (2.5) BS01 CA ? GO:0005509 ... P09803 20190754
    13967 3lnf:B (2.5) BS02 CA ? GO:0005509 ... P09803 20190754
    13968 3lnf:B (2.5) BS03 CA ? GO:0005509 ... P09803 20190754
    13969 3lng:A (2.7) BS01 CA ? GO:0005509 ... P09803 20190754
    13970 3lng:A (2.7) BS02 CA ? GO:0005509 ... P09803 20190754
    13971 3lng:A (2.7) BS03 CA ? GO:0005509 ... P09803 20190754
    13972 3lng:B (2.7) BS01 CA ? GO:0005509 ... P09803 20190754
    13973 3lng:B (2.7) BS02 CA ? GO:0005509 ... P09803 20190754
    13974 3lng:B (2.7) BS03 CA ? GO:0005509 ... P09803 20190754
    13975 3lnh:A (2.6) BS01 CA ? GO:0005509 ... P09803 20190754
    13976 3lnh:A (2.6) BS02 CA ? GO:0005509 ... P09803 20190754
    13977 3lnh:A (2.6) BS03 CA ? GO:0005509 ... P09803 20190754
    13978 3lnh:B (2.6) BS01 CA ? GO:0005509 ... P09803 20190754
    13979 3lnh:B (2.6) BS02 CA ? GO:0005509 ... P09803 20190754
    13980 3lnh:B (2.6) BS03 CA ? GO:0005509 ... P09803 20190754
    13981 3lni:A (2.3) BS01 CA ? GO:0005509 ... P09803 20190754
    13982 3lni:A (2.3) BS02 CA ? GO:0005509 ... P09803 20190754
    13983 3lni:A (2.3) BS03 CA ? GO:0005509 ... P09803 20190754
    13984 3lni:B (2.3) BS01 CA ? GO:0005509 ... P09803 20190754
    13985 3lni:B (2.3) BS02 CA ? GO:0005509 ... P09803 20190754
    13986 3lni:B (2.3) BS03 CA ? GO:0005509 ... P09803 20190754
    13987 3lnp:A (2.1) BS01 CA 3.5.4.28
    3.5.4.31
    GO:0016787 ... D3KFX9 23877221
    13988 3lnp:A (2.1) BS02 CA 3.5.4.28
    3.5.4.31
    GO:0016787 ... D3KFX9 23877221
    13989 3lo5:E (2.568) BS02 CA 3.6.5.2 GO:0003924 ... P01112 20131908
    13990 3lor:B (2.2) BS01 CA ? GO:0016491 ... Q8NRX7 N/A
    13991 3lp9:A (2.2) BS01 CA ? GO:0005509 ... D4AEP7 20147493
    13992 3lp9:B (2.2) BS01 CA ? GO:0005509 ... D4AEP7 20147493
    13993 3lp9:C (2.2) BS01 CA ? GO:0005509 ... D4AEP7 20147493
    13994 3lp9:D (2.2) BS01 CA ? GO:0005509 ... D4AEP7 20147493
    13995 3lpa:A (2.0) BS01 CA 3.4.21.- GO:0004252 ... A5EXI3 21124876
    13996 3lpa:A (2.0) BS02 CA 3.4.21.- GO:0004252 ... A5EXI3 21124876
    13997 3lpa:A (2.0) BS03 CA 3.4.21.- GO:0004252 ... A5EXI3 21124876
    13998 3lpc:A (1.7) BS01 CA N/A GO:0004252 ... N/A 21124876
    13999 3lpc:A (1.7) BS02 CA N/A GO:0004252 ... N/A 21124876
    14000 3lpc:A (1.7) BS03 CA N/A GO:0004252 ... N/A 21124876

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417