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BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13001 3hli:B (1.4) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    13002 3hli:B (1.4) BS02 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    13003 3hli:C (1.4) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    13004 3hli:C (1.4) BS02 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    13005 3hli:D (1.4) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    13006 3hli:D (1.4) BS02 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    13007 3hln:E (3.2) BS01 CA 3.4.21.92 GO:0004176 ... P0A6G7 20637416
    13008 3hln:I (3.2) BS01 CA 3.4.21.92 GO:0004176 ... P0A6G7 20637416
    13009 3hln:J (3.2) BS01 CA 3.4.21.92 GO:0004176 ... P0A6G7 20637416
    13010 3hln:Z (3.2) BS01 CA 3.4.21.92 GO:0004176 ... P0A6G7 20637416
    13011 3hly:B (2.403) BS01 CA ? GO:0010181 ... A0A0H3K5M0 N/A
    13012 3hm2:G (2.205) BS02 CA ? GO:0008276 ... Q6NHA4 N/A
    13013 3hm5:A (1.8) BS01 CA ? GO:0006281 ... Q9NPF5 N/A
    13014 3hn8:A (3.5) BS01 CA ? GO:0016020 ... P40748 20173762
    13015 3hn8:A (3.5) BS02 CA ? GO:0016020 ... P40748 20173762
    13016 3hn8:A (3.5) BS03 CA ? GO:0016020 ... P40748 20173762
    13017 3hn8:A (3.5) BS04 CA ? GO:0016020 ... P40748 20173762
    13018 3hn8:A (3.5) BS05 CA ? GO:0016020 ... P40748 20173762
    13019 3hn8:A (3.5) BS06 CA ? GO:0016020 ... P40748 20173762
    13020 3hn8:B (3.5) BS01 CA ? GO:0016020 ... P40748 20173762
    13021 3hn8:B (3.5) BS02 CA ? GO:0016020 ... P40748 20173762
    13022 3hn8:B (3.5) BS03 CA ? GO:0016020 ... P40748 20173762
    13023 3hn8:B (3.5) BS04 CA ? GO:0016020 ... P40748 20173762
    13024 3hn8:B (3.5) BS05 CA ? GO:0016020 ... P40748 20173762
    13025 3hn8:B (3.5) BS06 CA ? GO:0016020 ... P40748 20173762
    13026 3hn8:C (3.5) BS01 CA ? GO:0016020 ... P40748 20173762
    13027 3hn8:C (3.5) BS02 CA ? GO:0016020 ... P40748 20173762
    13028 3hn8:C (3.5) BS03 CA ? GO:0016020 ... P40748 20173762
    13029 3hn8:C (3.5) BS04 CA ? GO:0016020 ... P40748 20173762
    13030 3hn8:C (3.5) BS05 CA ? GO:0016020 ... P40748 20173762
    13031 3hn8:C (3.5) BS06 CA ? GO:0016020 ... P40748 20173762
    13032 3ho5:H (3.01) BS02 CA 3.1.-.- GO:0007267 ... Q15465 19561609
    13033 3ho5:H (3.01) BS03 CA 3.1.-.- GO:0007267 ... Q15465 19561609
    13034 3hoh:D (1.95) BS01 CA 4.6.1.24 GO:0001411 ... P00651 10211818
    13035 3hpt:B (2.19) BS02 CA 3.4.21.6 GO:0004252 ... P00742 19541481
    13036 3hpt:D (2.19) BS02 CA 3.4.21.6 GO:0004252 ... P00742 19541481
    13037 3hq6:A (2.0) BS03 CA 1.11.1.5 GO:0009055 ... Q749D0 19735665
    13038 3hq6:B (2.0) BS03 CA 1.11.1.5 GO:0009055 ... Q749D0 19735665
    13039 3hq7:A (2.31) BS03 CA 1.11.1.5 GO:0009055 ... Q749D0 19735665
    13040 3hq8:A (2.4) BS03 CA 1.11.1.5 GO:0009055 ... Q749D0 19735665
    13041 3hq8:B (2.4) BS03 CA 1.11.1.5 GO:0009055 ... Q749D0 19735665
    13042 3hq9:A (1.52) BS03 CA 1.11.1.5 GO:0009055 ... Q749D0 19735665
    13043 3hq9:B (1.52) BS03 CA 1.11.1.5 GO:0009055 ... Q749D0 19735665
    13044 3hr4:B (2.5) BS01 CA ? GO:0000086 ... P0DP23 N/A
    13045 3hr4:B (2.5) BS02 CA ? GO:0000086 ... P0DP23 N/A
    13046 3hr4:B (2.5) BS03 CA ? GO:0000086 ... P0DP23 N/A
    13047 3hr4:B (2.5) BS04 CA ? GO:0000086 ... P0DP23 N/A
    13048 3hr4:D (2.5) BS01 CA ? GO:0000086 ... P0DP23 N/A
    13049 3hr4:D (2.5) BS02 CA ? GO:0000086 ... P0DP23 N/A
    13050 3hr4:D (2.5) BS03 CA ? GO:0000086 ... P0DP23 N/A
    13051 3hr4:D (2.5) BS04 CA ? GO:0000086 ... P0DP23 N/A
    13052 3hr4:F (2.5) BS01 CA ? GO:0000086 ... P0DP23 N/A
    13053 3hr4:F (2.5) BS02 CA ? GO:0000086 ... P0DP23 N/A
    13054 3hr4:F (2.5) BS03 CA ? GO:0000086 ... P0DP23 N/A
    13055 3hr4:F (2.5) BS04 CA ? GO:0000086 ... P0DP23 N/A
    13056 3hr4:H (2.5) BS01 CA ? GO:0000086 ... P0DP23 N/A
    13057 3hr4:H (2.5) BS02 CA ? GO:0000086 ... P0DP23 N/A
    13058 3hr4:H (2.5) BS03 CA ? GO:0000086 ... P0DP23 N/A
    13059 3hr4:H (2.5) BS04 CA ? GO:0000086 ... P0DP23 N/A
    13060 3hr6:A (1.6) BS01 CA ? N/A Q6NF81 19805181
    13061 3hr9:A (1.7) BS01 CA 3.2.1.73 GO:0004553 ... P17989 N/A
    13062 3hr9:A (1.7) BS02 CA 3.2.1.73 GO:0004553 ... P17989 N/A
    13063 3hr9:A (1.7) BS03 CA 3.2.1.73 GO:0004553 ... P17989 N/A
    13064 3hrd:E (2.2) BS02 CA 1.17.1.5 GO:0005506 ... Q0QLF2 19549881
    13065 3hsw:A (2.5) BS01 CA 3.1.1.4 GO:0002446 ... P00592 N/A
    13066 3hsw:A (2.5) BS02 CA 3.1.1.4 GO:0002446 ... P00592 N/A
    13067 3htl:X (1.8) BS01 CA ? N/A Q6NF81 19805181
    13068 3hus:B (3.04) BS02 CA ? GO:0005102 ... P02675 19650644
    13069 3hus:C (3.04) BS02 CA ? GO:0005102 ... P02679 19650644
    13070 3hus:E (3.04) BS02 CA ? GO:0005102 ... P02675 19650644
    13071 3hus:F (3.04) BS02 CA ? GO:0005102 ... P02679 19650644
    13072 3hvd:A (3.209) BS01 CA ? GO:0005576 ... Q08G54 19627991
    13073 3hvd:A (3.209) BS02 CA ? GO:0005576 ... Q08G54 19627991
    13074 3hvd:B (3.209) BS01 CA ? GO:0005576 ... Q08G54 19627991
    13075 3hvd:B (3.209) BS02 CA ? GO:0005576 ... Q08G54 19627991
    13076 3hvd:C (3.209) BS01 CA ? GO:0005576 ... Q08G54 19627991
    13077 3hvd:C (3.209) BS02 CA ? GO:0005576 ... Q08G54 19627991
    13078 3hvd:D (3.209) BS01 CA ? GO:0005576 ... Q08G54 19627991
    13079 3hvd:D (3.209) BS02 CA ? GO:0005576 ... Q08G54 19627991
    13080 3hvd:E (3.209) BS01 CA ? GO:0005576 ... Q08G54 19627991
    13081 3hvd:E (3.209) BS02 CA ? GO:0005576 ... Q08G54 19627991
    13082 3hvd:F (3.209) BS01 CA ? GO:0005576 ... Q08G54 19627991
    13083 3hvd:F (3.209) BS02 CA ? GO:0005576 ... Q08G54 19627991
    13084 3hvd:G (3.209) BS01 CA ? GO:0005576 ... Q08G54 19627991
    13085 3hvd:G (3.209) BS02 CA ? GO:0005576 ... Q08G54 19627991
    13086 3hvd:H (3.209) BS01 CA ? GO:0005576 ... Q08G54 19627991
    13087 3hvd:H (3.209) BS02 CA ? GO:0005576 ... Q08G54 19627991
    13088 3hx4:A (1.95) BS01 CA ? GO:0004672 ... Q9BJF5 20436473
    13089 3hx4:A (1.95) BS02 CA ? GO:0004672 ... Q9BJF5 20436473
    13090 3hx4:A (1.95) BS03 CA ? GO:0004672 ... Q9BJF5 20436473
    13091 3hx4:A (1.95) BS04 CA ? GO:0004672 ... Q9BJF5 20436473
    13092 3hx6:A (2.1) BS01 CA ? N/A Q9HVM8 20080557
    13093 3hx6:B (2.1) BS01 CA ? N/A Q9HVM8 20080557
    13094 3hxc:B (1.95) BS02 CA 2.5.1.60 GO:0003824 ... Q08603 19894725
    13095 3hxd:B (1.95) BS02 CA 2.5.1.60 GO:0003824 ... Q08603 19894725
    13096 3hxe:B (1.95) BS02 CA 2.5.1.60 GO:0003824 ... Q08603 19894725
    13097 3hxf:B (1.9) BS02 CA 2.5.1.60 GO:0003824 ... Q08603 19894725
    13098 3hy7:A (1.69) BS03 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13099 3hy7:A (1.69) BS04 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13100 3hy7:A (1.69) BS05 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13101 3hy7:B (1.69) BS03 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13102 3hy7:B (1.69) BS04 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13103 3hy7:B (1.69) BS05 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13104 3hy9:A (2.02) BS02 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13105 3hy9:A (2.02) BS03 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13106 3hy9:A (2.02) BS04 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13107 3hy9:B (2.02) BS02 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13108 3hy9:B (2.02) BS03 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13109 3hy9:B (2.02) BS04 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13110 3hyg:A (1.4) BS02 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13111 3hyg:A (1.4) BS03 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13112 3hyg:A (1.4) BS04 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13113 3hyg:B (1.4) BS02 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13114 3hyg:B (1.4) BS03 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13115 3hyg:B (1.4) BS04 CA 3.4.24.- GO:0004222 ... Q9UNA0 19586907
    13116 3hz2:A (1.86) BS01 CA ? N/A Q8TMX3 19921810
    13117 3hz2:A (1.86) BS02 CA ? N/A Q8TMX3 19921810
    13118 3hz2:B (1.86) BS01 CA ? N/A Q8TMX3 19921810
    13119 3hz2:B (1.86) BS02 CA ? N/A Q8TMX3 19921810
    13120 3hz2:C (1.86) BS01 CA ? N/A Q8TMX3 19921810
    13121 3hz2:C (1.86) BS02 CA ? N/A Q8TMX3 19921810
    13122 3hz2:D (1.86) BS01 CA ? N/A Q8TMX3 19921810
    13123 3hz2:D (1.86) BS02 CA ? N/A Q8TMX3 19921810
    13124 3hz3:A (2.22) BS04 CA 2.4.1.5 GO:0009250 ... Q5SBN3 21118988
    13125 3hzb:A (1.74) BS01 CA ? N/A A5FC88 19921810
    13126 3hzb:A (1.74) BS02 CA ? N/A A5FC88 19921810
    13127 3hzb:A (1.74) BS03 CA ? N/A A5FC88 19921810
    13128 3hzb:B (1.74) BS01 CA ? N/A A5FC88 19921810
    13129 3hzb:B (1.74) BS02 CA ? N/A A5FC88 19921810
    13130 3hzb:B (1.74) BS03 CA ? N/A A5FC88 19921810
    13131 3hzb:C (1.74) BS01 CA ? N/A A5FC88 19921810
    13132 3hzb:C (1.74) BS02 CA ? N/A A5FC88 19921810
    13133 3hzb:C (1.74) BS03 CA ? N/A A5FC88 19921810
    13134 3hzb:D (1.74) BS01 CA ? N/A A5FC88 19921810
    13135 3hzb:D (1.74) BS02 CA ? N/A A5FC88 19921810
    13136 3hzb:D (1.74) BS03 CA ? N/A A5FC88 19921810
    13137 3hzb:E (1.74) BS01 CA ? N/A A5FC88 19921810
    13138 3hzb:E (1.74) BS02 CA ? N/A A5FC88 19921810
    13139 3hzb:E (1.74) BS03 CA ? N/A A5FC88 19921810
    13140 3hzb:F (1.74) BS01 CA ? N/A A5FC88 19921810
    13141 3hzb:F (1.74) BS02 CA ? N/A A5FC88 19921810
    13142 3hzb:F (1.74) BS03 CA ? N/A A5FC88 19921810
    13143 3hzb:G (1.74) BS01 CA ? N/A A5FC88 19921810
    13144 3hzb:G (1.74) BS02 CA ? N/A A5FC88 19921810
    13145 3hzb:G (1.74) BS03 CA ? N/A A5FC88 19921810
    13146 3hzb:H (1.74) BS01 CA ? N/A A5FC88 19921810
    13147 3hzb:H (1.74) BS02 CA ? N/A A5FC88 19921810
    13148 3hzb:H (1.74) BS03 CA ? N/A A5FC88 19921810
    13149 3hzx:A (2.0) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    13150 3i08:A (3.2) BS01 CA ? GO:0016020 ... P46531 19701457
    13151 3i08:A (3.2) BS02 CA ? GO:0016020 ... P46531 19701457
    13152 3i08:A (3.2) BS03 CA ? GO:0016020 ... P46531 19701457
    13153 3i08:C (3.2) BS01 CA ? GO:0016020 ... P46531 19701457
    13154 3i08:C (3.2) BS02 CA ? GO:0016020 ... P46531 19701457
    13155 3i08:C (3.2) BS03 CA ? GO:0016020 ... P46531 19701457
    13156 3i29:A (2.4) BS01 CA 3.4.21.4 GO:0004175 ... P00760 22709512
    13157 3i2y:X (0.995) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    13158 3i30:X (0.992) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    13159 3i34:X (1.0) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    13160 3i37:X (0.995) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    13161 3i3s:R (1.36) BS03 CA 3.6.5.2 GO:0003924 ... P01112 19966803
    13162 3i46:A (2.6) BS01 CA ? GO:0003824 ... A7LAI8 N/A
    13163 3i46:B (2.6) BS01 CA ? GO:0003824 ... A7LAI8 N/A
    13164 3i46:B (2.6) BS02 CA ? GO:0003824 ... A7LAI8 N/A
    13165 3i4i:A (1.89) BS01 CA 3.2.1.73 GO:0004553 ... Q58WW0 N/A
    13166 3i4i:B (1.89) BS01 CA 3.2.1.73 GO:0004553 ... Q58WW0 N/A
    13167 3i57:A (1.8) BS01 CA ? N/A Q9RGN5 19758995
    13168 3i57:B (1.8) BS01 CA ? N/A Q9RGN5 19758995
    13169 3i5g:C (2.6) BS01 CA ? GO:0005509 ... P05945 17502101
    13170 3i5h:C (3.4) BS01 CA ? GO:0005509 ... P05945 17502101
    13171 3i5i:C (3.3) BS01 CA ? GO:0005509 ... P05945 17502101
    13172 3i6n:A (2.7) BS03 CA 1.11.1.7 GO:0004601 ... P80025 19907057
    13173 3i77:A (2.1) BS01 CA 3.4.21.4 GO:0004252 ... P00775 20399789
    13174 3i7g:A (1.95) BS03 CA 3.4.24.- GO:0004222 ... P45452 19692239
    13175 3i7g:A (1.95) BS04 CA 3.4.24.- GO:0004222 ... P45452 19692239
    13176 3i7g:A (1.95) BS05 CA 3.4.24.- GO:0004222 ... P45452 19692239
    13177 3i7g:B (1.95) BS03 CA 3.4.24.- GO:0004222 ... P45452 19692239
    13178 3i7g:B (1.95) BS04 CA 3.4.24.- GO:0004222 ... P45452 19692239
    13179 3i7g:B (1.95) BS05 CA 3.4.24.- GO:0004222 ... P45452 19692239
    13180 3i7i:A (2.208) BS03 CA 3.4.24.- GO:0004222 ... P45452 19692239
    13181 3i7i:A (2.208) BS04 CA 3.4.24.- GO:0004222 ... P45452 19692239
    13182 3i7i:A (2.208) BS05 CA 3.4.24.- GO:0004222 ... P45452 19692239
    13183 3i7i:B (2.208) BS03 CA 3.4.24.- GO:0004222 ... P45452 19692239
    13184 3i7i:B (2.208) BS04 CA 3.4.24.- GO:0004222 ... P45452 19692239
    13185 3i7i:B (2.208) BS05 CA 3.4.24.- GO:0004222 ... P45452 19692239
    13186 3i98:A (1.85) BS01 CA 3.6.1.1 GO:0000287 ... H0USY5 N/A
    13187 3i98:B (1.85) BS01 CA 3.6.1.1 GO:0000287 ... H0USY5 N/A
    13188 3i98:C (1.85) BS01 CA 3.6.1.1 GO:0000287 ... H0USY5 N/A
    13189 3i98:D (1.85) BS01 CA 3.6.1.1 GO:0000287 ... H0USY5 N/A
    13190 3i98:E (1.85) BS01 CA 3.6.1.1 GO:0000287 ... H0USY5 N/A
    13191 3i98:F (1.85) BS01 CA 3.6.1.1 GO:0000287 ... H0USY5 N/A
    13192 3i9g:L (1.9) BS01 CA N/A N/A N/A 19815502
    13193 3i9g:L (1.9) BS02 CA N/A N/A N/A 19815502
    13194 3i9h:A (2.0) BS01 CA ? N/A A6LX94 19921810
    13195 3i9h:A (2.0) BS02 CA ? N/A A6LX94 19921810
    13196 3i9h:B (2.0) BS01 CA ? N/A A6LX94 19921810
    13197 3i9h:B (2.0) BS02 CA ? N/A A6LX94 19921810
    13198 3i9h:C (2.0) BS01 CA ? N/A A6LX94 19921810
    13199 3i9h:C (2.0) BS02 CA ? N/A A6LX94 19921810
    13200 3i9h:D (2.0) BS01 CA ? N/A A6LX94 19921810

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417