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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12801 3gn4:B (2.7) BS01 CA ? GO:0005509 ... P62152 19664948
    12802 3gn4:B (2.7) BS02 CA ? GO:0005509 ... P62152 19664948
    12803 3gn4:B (2.7) BS03 CA ? GO:0005509 ... P62152 19664948
    12804 3gn4:B (2.7) BS04 CA ? GO:0005509 ... P62152 19664948
    12805 3gn4:F (2.7) BS01 CA ? GO:0005509 ... P62152 19664948
    12806 3gn4:F (2.7) BS02 CA ? GO:0005509 ... P62152 19664948
    12807 3gn4:F (2.7) BS03 CA ? GO:0005509 ... P62152 19664948
    12808 3gn4:F (2.7) BS04 CA ? GO:0005509 ... P62152 19664948
    12809 3gn9:A (1.86) BS01 CA N/A GO:0015627 ... N/A 19640838
    12810 3gn9:B (1.86) BS01 CA N/A GO:0015627 ... N/A 19640838
    12811 3gn9:C (1.86) BS01 CA N/A GO:0015627 ... N/A 19640838
    12812 3god:A (2.17) BS02 CA 3.1.-.- GO:0003676 ... Q02ML7 19523907
    12813 3god:B (2.17) BS02 CA 3.1.-.- GO:0003676 ... Q02ML7 19523907
    12814 3goe:A (0.97) BS01 CA ? N/A Q9USX3 19363481
    12815 3gof:A (1.45) BS02 CA ? GO:0005509 ... P62149 N/A
    12816 3gof:A (1.45) BS03 CA ? GO:0005509 ... P62149 N/A
    12817 3gof:A (1.45) BS04 CA ? GO:0005509 ... P62149 N/A
    12818 3gof:A (1.45) BS05 CA ? GO:0005509 ... P62149 N/A
    12819 3gof:B (1.45) BS02 CA ? GO:0005509 ... P62149 N/A
    12820 3gof:B (1.45) BS03 CA ? GO:0005509 ... P62149 N/A
    12821 3gof:B (1.45) BS04 CA ? GO:0005509 ... P62149 N/A
    12822 3gof:B (1.45) BS05 CA ? GO:0005509 ... P62149 N/A
    12823 3gp2:A (1.46) BS02 CA ? GO:0005509 ... P62149 N/A
    12824 3gp2:A (1.46) BS03 CA ? GO:0005509 ... P62149 N/A
    12825 3gp2:A (1.46) BS04 CA ? GO:0005509 ... P62149 N/A
    12826 3gp2:A (1.46) BS05 CA ? GO:0005509 ... P62149 N/A
    12827 3gpe:A (2.0) BS01 CA 2.7.11.13 N/A P05696 19346474
    12828 3gpe:A (2.0) BS02 CA 2.7.11.13 N/A P05696 19346474
    12829 3gpe:A (2.0) BS03 CA 2.7.11.13 N/A P05696 19346474
    12830 3gq7:A (2.05) BS01 CA ? N/A P20345 19450535
    12831 3gq8:A (2.0) BS01 CA ? N/A P20345 19450535
    12832 3gqf:A (2.2) BS02 CA 1.15.1.1 GO:0000302 ... P00441 19227972
    12833 3gqf:B (2.2) BS02 CA 1.15.1.1 GO:0000302 ... P00441 19227972
    12834 3gqf:C (2.2) BS02 CA 1.15.1.1 GO:0000302 ... P00441 19227972
    12835 3gqf:D (2.2) BS02 CA 1.15.1.1 GO:0000302 ... P00441 19227972
    12836 3gqf:F (2.2) BS02 CA 1.15.1.1 GO:0000302 ... P00441 19227972
    12837 3gri:A (2.0) BS02 CA 3.5.2.3 GO:0004038 ... P65907 N/A
    12838 3gri:B (2.0) BS02 CA 3.5.2.3 GO:0004038 ... P65907 N/A
    12839 3gri:B (2.0) BS03 CA 3.5.2.3 GO:0004038 ... P65907 N/A
    12840 3guk:A (1.85) BS01 CA 3.2.1.17 GO:0003796 ... P00720 19663503
    12841 3gul:B (2.07) BS02 CA 3.2.1.17 GO:0003796 ... P00720 19663503
    12842 3gum:B (2.24) BS02 CA 3.2.1.17 GO:0003796 ... P00720 19663503
    12843 3gun:A (1.5) BS02 CA 3.2.1.17 GO:0003796 ... P00720 19663503
    12844 3gun:B (1.5) BS01 CA 3.2.1.17 GO:0003796 ... P00720 19663503
    12845 3gv5:B (2.0) BS03 CA 2.7.7.7 GO:0003684 ... Q9UNA4 19440206
    12846 3gv5:B (2.0) BS04 CA 2.7.7.7 GO:0003684 ... Q9UNA4 19440206
    12847 3gv5:D (2.0) BS03 CA 2.7.7.7 GO:0003684 ... Q9UNA4 19440206
    12848 3gv5:D (2.0) BS04 CA 2.7.7.7 GO:0003684 ... Q9UNA4 19440206
    12849 3gw6:B (2.6) BS01 CA 3.2.1.129 GO:0016996 ... Q04830 20118935
    12850 3gwz:D (1.91) BS01 CA 2.1.1.316 GO:0008168 ... Q9X5T6 21538548
    12851 3gwz:D (1.91) BS02 CA 2.1.1.316 GO:0008168 ... Q9X5T6 21538548
    12852 3gwz:D (1.91) BS03 CA 2.1.1.316 GO:0008168 ... Q9X5T6 21538548
    12853 3gxo:D (2.3) BS03 CA 2.1.1.316 GO:0008168 ... Q9X5T6 21538548
    12854 3gxo:D (2.3) BS04 CA 2.1.1.316 GO:0008168 ... Q9X5T6 21538548
    12855 3gy2:A (1.57) BS01 CA 3.4.21.4 GO:0004175 ... P00760 20356563
    12856 3gy3:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 20356563
    12857 3gy4:A (1.55) BS01 CA 3.4.21.4 GO:0004175 ... P00760 20356563
    12858 3gy5:A (1.57) BS01 CA 3.4.21.4 GO:0004175 ... P00760 20356563
    12859 3gy6:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 20356563
    12860 3gy7:A (1.55) BS01 CA 3.4.21.4 GO:0004175 ... P00760 20356563
    12861 3gy8:A (1.75) BS01 CA 3.4.21.4 GO:0004175 ... P00760 20356563
    12862 3gyl:B (1.3) BS01 CA 3.4.21.- GO:0004252 ... Q16651 19388054
    12863 3gzk:A (1.8) BS01 CA 3.2.1.4 GO:0003824 ... Q9AJS0 19729024
    12864 3gzt:B (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    12865 3gzt:B (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    12866 3gzt:F (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    12867 3gzt:F (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    12868 3gzt:G (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    12869 3gzt:G (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    12870 3gzt:H (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    12871 3gzt:H (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    12872 3gzt:I (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    12873 3gzt:I (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    12874 3gzt:J (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    12875 3gzt:J (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    12876 3gzt:K (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    12877 3gzt:K (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    12878 3gzt:L (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    12879 3gzt:L (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    12880 3gzt:M (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    12881 3gzt:M (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    12882 3gzt:N (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    12883 3gzt:N (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    12884 3gzt:O (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    12885 3gzt:O (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    12886 3gzt:P (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    12887 3gzt:P (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    12888 3gzt:Q (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    12889 3gzt:Q (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    12890 3h0o:A (1.4) BS01 CA 3.2.1.73 GO:0004553 ... P17989 N/A
    12891 3h0o:A (1.4) BS02 CA 3.2.1.73 GO:0004553 ... P17989 N/A
    12892 3h0o:A (1.4) BS03 CA 3.2.1.73 GO:0004553 ... P17989 N/A
    12893 3h2w:A (2.66) BS04 CA 3.2.1.4 GO:0003824 ... Q9AJS0 19729024
    12894 3h32:B (3.6) BS02 CA ? GO:0002250 ... P02675 19588915
    12895 3h32:C (3.6) BS01 CA ? GO:0005102 ... P02679 19588915
    12896 3h32:E (3.6) BS02 CA ? GO:0002250 ... P02675 19588915
    12897 3h32:F (3.6) BS01 CA ? GO:0005102 ... P02679 19588915
    12898 3h36:A (1.8) BS01 CA 2.7.7.8 GO:0003723 ... Q8DWB2 N/A
    12899 3h3k:A (2.1) BS04 CA 3.2.1.4 GO:0003824 ... Q9AJS0 19729024
    12900 3h3p:H (2.7) BS02 CA N/A N/A N/A 19906921
    12901 3h4s:E (2.4) BS01 CA ? GO:0005509 ... Q9ZPX9 19416847
    12902 3h6g:A (2.697) BS01 CA ? N/A P42260 19465914
    12903 3h6g:B (2.697) BS01 CA ? N/A P42260 19465914
    12904 3h6h:A (2.901) BS01 CA ? N/A P42260 19465914
    12905 3h6h:B (2.901) BS01 CA ? N/A P42260 19465914
    12906 3h6m:A (1.7) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    12907 3h7d:A (2.242) BS02 CA 3.4.22.38 GO:0006508 ... P43235 21193413
    12908 3h7d:E (2.242) BS01 CA 3.4.22.38 GO:0006508 ... P43235 21193413
    12909 3h81:A (1.8) BS01 CA 4.2.1.17 GO:0003824 ... P9WNN9 25613812
    12910 3h81:C (1.8) BS01 CA 4.2.1.17 GO:0003824 ... P9WNN9 25613812
    12911 3h9d:B (2.3) BS01 CA ? GO:0000045 ... Q582K6 19736525
    12912 3h9d:B (2.3) BS02 CA ? GO:0000045 ... Q582K6 19736525
    12913 3hah:A (2.77) BS01 CA ? N/A Q9BY11 19549836
    12914 3hah:B (2.77) BS01 CA ? N/A Q9BY11 19549836
    12915 3haj:A (2.78) BS01 CA ? GO:0005515 ... Q9UNF0 19549836
    12916 3haj:B (2.78) BS01 CA ? GO:0005515 ... Q9UNF0 19549836
    12917 3hb2:P (1.75) BS01 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12918 3hb2:P (1.75) BS02 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12919 3hb2:P (1.75) BS03 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12920 3hb2:P (1.75) BS04 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12921 3hb2:P (1.75) BS05 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12922 3hb2:P (1.75) BS06 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12923 3hb2:P (1.75) BS08 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12924 3hb3:A (2.25) BS05 CA 7.1.1.9 GO:0004129 ... P98002 19374884
    12925 3hbu:P (1.77) BS02 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12926 3hbu:P (1.77) BS03 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12927 3hbu:P (1.77) BS04 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12928 3hbu:P (1.77) BS05 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12929 3hbu:P (1.77) BS06 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12930 3hbu:P (1.77) BS07 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12931 3hbu:P (1.77) BS11 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12932 3hbv:P (1.95) BS02 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12933 3hbv:P (1.95) BS03 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12934 3hbv:P (1.95) BS04 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12935 3hbv:P (1.95) BS05 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12936 3hbv:P (1.95) BS06 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12937 3hbv:P (1.95) BS07 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12938 3hbv:P (1.95) BS09 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12939 3hbz:A (2.05) BS01 CA ? GO:0046872 ... Q8A605 20944224
    12940 3hbz:A (2.05) BS02 CA ? GO:0046872 ... Q8A605 20944224
    12941 3hci:B (2.59) BS02 CA 1.8.4.12 GO:0005737 ... Q8P4Q6 19733575
    12942 3hcm:A (2.0) BS01 CA ? GO:0001726 ... P04271 20077460
    12943 3hcm:A (2.0) BS02 CA ? GO:0001726 ... P04271 20077460
    12944 3hcm:B (2.0) BS01 CA ? GO:0001726 ... P04271 20077460
    12945 3hcm:B (2.0) BS02 CA ? GO:0001726 ... P04271 20077460
    12946 3hda:P (2.131) BS02 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12947 3hda:P (2.131) BS03 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12948 3hda:P (2.131) BS04 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12949 3hda:P (2.131) BS05 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12950 3hda:P (2.131) BS06 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12951 3hda:P (2.131) BS07 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12952 3hda:P (2.131) BS08 CA 3.4.24.40 GO:0004222 ... P16317 19558324
    12953 3hdb:A (2.31) BS03 CA N/A GO:0004222 ... N/A 19505434
    12954 3hdb:A (2.31) BS04 CA N/A GO:0004222 ... N/A 19505434
    12955 3hdb:A (2.31) BS05 CA N/A GO:0004222 ... N/A 19505434
    12956 3hdb:A (2.31) BS06 CA N/A GO:0004222 ... N/A 19505434
    12957 3hdb:A (2.31) BS07 CA N/A GO:0004222 ... N/A 19505434
    12958 3hdb:A (2.31) BS08 CA N/A GO:0004222 ... N/A 19505434
    12959 3hdl:A (1.85) BS02 CA 1.11.1.7 GO:0004601 ... D1MPT2 19854274
    12960 3hdl:A (1.85) BS03 CA 1.11.1.7 GO:0004601 ... D1MPT2 19854274
    12961 3hfj:A (2.02) BS02 CA N/A GO:0003824 ... N/A 19716475
    12962 3hfj:B (2.02) BS02 CA N/A GO:0003824 ... N/A 19716475
    12963 3hgn:A (1.201) BS02 CA 3.4.21.36 GO:0004252 ... P00772 19603802
    12964 3hgp:A (0.94) BS02 CA 3.4.21.36 GO:0004252 ... P00772 19603802
    12965 3hgw:D (2.25) BS01 CA 4.2.99.21
    5.4.99.5    		 GO:0004106 ... Q51507 19432488
    12966 3hi7:A (1.799) BS02 CA 1.4.3.22 GO:0005507 ... P19801 19764817
    12967 3hi7:A (1.799) BS03 CA 1.4.3.22 GO:0005507 ... P19801 19764817
    12968 3hi7:B (1.799) BS02 CA 1.4.3.22 GO:0005507 ... P19801 19764817
    12969 3hi7:B (1.799) BS03 CA 1.4.3.22 GO:0005507 ... P19801 19764817
    12970 3hig:A (2.09) BS02 CA 1.4.3.22 GO:0005507 ... P19801 19764817
    12971 3hig:A (2.09) BS03 CA 1.4.3.22 GO:0005507 ... P19801 19764817
    12972 3hig:B (2.09) BS02 CA 1.4.3.22 GO:0005507 ... P19801 19764817
    12973 3hig:B (2.09) BS03 CA 1.4.3.22 GO:0005507 ... P19801 19764817
    12974 3hii:A (2.149) BS02 CA 1.4.3.22 GO:0005507 ... P19801 19764817
    12975 3hii:A (2.149) BS03 CA 1.4.3.22 GO:0005507 ... P19801 19764817
    12976 3hii:B (2.149) BS02 CA 1.4.3.22 GO:0005507 ... P19801 19764817
    12977 3hii:B (2.149) BS03 CA 1.4.3.22 GO:0005507 ... P19801 19764817
    12978 3hjb:B (1.5) BS01 CA 5.3.1.9 GO:0004347 ... Q9KUY4 N/A
    12979 3hjm:A (2.1) BS01 CA 2.5.1.18 GO:0000302 ... P09211 19780048
    12980 3hjm:B (2.1) BS01 CA 2.5.1.18 GO:0000302 ... P09211 19780048
    12981 3hjm:C (2.1) BS01 CA 2.5.1.18 GO:0000302 ... P09211 19780048
    12982 3hjm:D (2.1) BS01 CA 2.5.1.18 GO:0000302 ... P09211 19780048
    12983 3hjo:A (1.95) BS03 CA 2.5.1.18 GO:0000302 ... P09211 19780048
    12984 3hjo:B (1.95) BS03 CA 2.5.1.18 GO:0000302 ... P09211 19780048
    12985 3hjr:A (1.65) BS01 CA 3.4.21.121 GO:0004252 ... Q9L5A4 19654332
    12986 3hjr:A (1.65) BS02 CA 3.4.21.121 GO:0004252 ... Q9L5A4 19654332
    12987 3hjr:A (1.65) BS03 CA 3.4.21.121 GO:0004252 ... Q9L5A4 19654332
    12988 3hkr:A (1.8) BS01 CA 2.5.1.18 GO:0000302 ... P09211 19780048
    12989 3hkr:B (1.8) BS01 CA 2.5.1.18 GO:0000302 ... P09211 19780048
    12990 3hl0:B (1.6) BS01 CA ? GO:0000166 ... A9CHP3 N/A
    12991 3hlh:A (1.8) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    12992 3hlh:A (1.8) BS02 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    12993 3hlh:B (1.8) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    12994 3hlh:B (1.8) BS02 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    12995 3hlh:C (1.8) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    12996 3hlh:C (1.8) BS02 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    12997 3hlh:D (1.8) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    12998 3hlh:D (1.8) BS02 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    12999 3hli:A (1.4) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    13000 3hli:A (1.4) BS02 CA 3.8.2.2 GO:0005509 ... Q7SIG4 19894712
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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