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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 1dth:B (2.0) BS02 CA 3.4.24.42 GO:0004222 ... P15167 8610113
    1002 1dtl:A (2.15) BS01 CA ? GO:0003009 ... P09860 10792039
    1003 1dtl:A (2.15) BS02 CA ? GO:0003009 ... P09860 10792039
    1004 1dtl:A (2.15) BS03 CA ? GO:0003009 ... P09860 10792039
    1005 1dtu:A (2.4) BS10 CA 2.4.1.19 GO:0003824 ... P43379 10686101
    1006 1dtu:A (2.4) BS11 CA 2.4.1.19 GO:0003824 ... P43379 10686101
    1007 1dv8:A (2.3) BS01 CA ? N/A P07306 10891274
    1008 1dv8:A (2.3) BS02 CA ? N/A P07306 10891274
    1009 1dv8:A (2.3) BS03 CA ? N/A P07306 10891274
    1010 1dva:H (3.0) BS03 CA 3.4.21.21 GO:0004252 ... P08709 10761907
    1011 1dva:I (3.0) BS03 CA 3.4.21.21 GO:0004252 ... P08709 10761907
    1012 1dva:L (3.0) BS04 CA 3.4.21.21 GO:0005509 ... P08709 10761907
    1013 1dva:M (3.0) BS02 CA 3.4.21.21 GO:0005509 ... P08709 10761907
    1014 1dvi:A (2.3) BS01 CA ? GO:0005509 ... Q64537 9228945
    1015 1dvi:A (2.3) BS02 CA ? GO:0005509 ... Q64537 9228945
    1016 1dvi:A (2.3) BS03 CA ? GO:0005509 ... Q64537 9228945
    1017 1dvi:A (2.3) BS04 CA ? GO:0005509 ... Q64537 9228945
    1018 1dvi:B (2.3) BS01 CA ? GO:0005509 ... Q64537 9228945
    1019 1dvi:B (2.3) BS02 CA ? GO:0005509 ... Q64537 9228945
    1020 1dvi:B (2.3) BS03 CA ? GO:0005509 ... Q64537 9228945
    1021 1dvi:B (2.3) BS04 CA ? GO:0005509 ... Q64537 9228945
    1022 1dx5:I (2.3) BS01 CA ? GO:0004888 ... P07204 10761923
    1023 1dx5:J (2.3) BS01 CA ? GO:0004888 ... P07204 10761923
    1024 1dx5:K (2.3) BS01 CA ? GO:0004888 ... P07204 10761923
    1025 1dx5:L (2.3) BS01 CA ? GO:0004888 ... P07204 10761923
    1026 1dyi:B (1.9) BS01 CA 1.5.1.3 GO:0004146 ... P0ABQ4 7873554
    1027 1dyk:A (2.0) BS01 CA ? N/A Q60675 10747011
    1028 1dyk:A (2.0) BS02 CA ? N/A Q60675 10747011
    1029 1dyo:A (2.1) BS01 CA 3.2.1.8 GO:0016798 ... P51584 10819965
    1030 1dyo:B (2.1) BS01 CA 3.2.1.8 GO:0016798 ... P51584 10819965
    1031 1dyu:A (2.04) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10387067
    1032 1dyu:A (2.04) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10387067
    1033 1dyu:B (2.04) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10387067
    1034 1dyu:B (2.04) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10387067
    1035 1dzq:A (2.85) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    1036 1dzq:B (2.85) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    1037 1dzq:C (2.85) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    1038 1dzq:D (2.85) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    1039 1e1a:A (1.8) BS01 CA 3.8.2.2 GO:0005509 ... Q7SIG4 11435114
    1040 1e1a:A (1.8) BS02 CA 3.8.2.2 GO:0005509 ... Q7SIG4 11435114
    1041 1e29:A (1.21) BS02 CA ? GO:0005506 ... Q55013 11315568
    1042 1e34:B (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 11023818
    1043 1e35:B (1.9) BS01 CA 3.4.21.36 GO:0004252 ... P00772 11023818
    1044 1e36:B (1.7) BS01 CA 3.4.21.36 GO:0004252 ... P00772 11023818
    1045 1e37:B (1.75) BS01 CA 3.4.21.36 GO:0004252 ... P00772 11023818
    1046 1e38:B (1.7) BS01 CA 3.4.21.36 GO:0004252 ... P00772 11023818
    1047 1e3a:B (1.8) BS01 CA 3.5.1.11 GO:0016787 ... P06875 10993730
    1048 1e3x:A (1.9) BS01 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1049 1e3x:A (1.9) BS02 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1050 1e3x:A (1.9) BS03 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1051 1e3x:A (1.9) BS04 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1052 1e3z:A (1.93) BS06 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1053 1e3z:A (1.93) BS07 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1054 1e3z:A (1.93) BS08 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1055 1e3z:A (1.93) BS09 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1056 1e40:A (2.2) BS04 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1057 1e40:A (2.2) BS05 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1058 1e40:A (2.2) BS06 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1059 1e40:A (2.2) BS07 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1060 1e43:A (1.7) BS01 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1061 1e43:A (1.7) BS02 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1062 1e43:A (1.7) BS03 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1063 1e43:A (1.7) BS04 CA 3.2.1.1 GO:0004553 ... P00692 10924103
    1064 1e54:A (2.1) BS02 CA ? GO:0006811 ... P24305 10986465
    1065 1e5j:A (1.85) BS04 CA 3.2.1.4 GO:0000272 ... O85465 11828460
    1066 1e5j:A (1.85) BS05 CA 3.2.1.4 GO:0000272 ... O85465 11828460
    1067 1e5n:A (3.2) BS05 CA 3.2.1.8 GO:0004553 ... P14768 11025547
    1068 1e5n:B (3.2) BS05 CA 3.2.1.8 GO:0004553 ... P14768 11025547
    1069 1e7d:A (2.8) BS02 CA 3.1.-.- GO:0004519 ... P13340 11327769
    1070 1e7d:B (2.8) BS02 CA 3.1.-.- GO:0004519 ... P13340 11327769
    1071 1e8a:A (1.95) BS01 CA ? GO:0002548 ... P80511 11134923
    1072 1e8a:A (1.95) BS02 CA ? GO:0002548 ... P80511 11134923
    1073 1e8a:B (1.95) BS01 CA ? GO:0002548 ... P80511 11134923
    1074 1e8a:B (1.95) BS02 CA ? GO:0002548 ... P80511 11134923
    1075 1e8t:A (2.5) BS01 CA 3.2.1.18 GO:0004308 ... Q9Q2W5 11062565
    1076 1e8u:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... Q9Q2W5 11062565
    1077 1e8u:B (2.0) BS01 CA 3.2.1.18 GO:0004308 ... Q9Q2W5 11062565
    1078 1e8v:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... Q9Q2W5 11062565
    1079 1e8v:B (2.0) BS01 CA 3.2.1.18 GO:0004308 ... Q9Q2W5 11062565
    1080 1ea7:A (0.93) BS01 CA ? GO:0004252 ... Q9S3L6 14499610
    1081 1ea7:A (0.93) BS02 CA ? GO:0004252 ... Q9S3L6 14499610
    1082 1ea7:A (0.93) BS03 CA ? GO:0004252 ... Q9S3L6 14499610
    1083 1ea7:A (0.93) BS04 CA ? GO:0004252 ... Q9S3L6 14499610
    1084 1eak:A (2.66) BS04 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    1085 1eak:A (2.66) BS05 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    1086 1eak:B (2.66) BS04 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    1087 1eak:B (2.66) BS05 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    1088 1eak:C (2.66) BS03 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    1089 1eak:C (2.66) BS04 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    1090 1eak:D (2.66) BS04 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    1091 1eak:D (2.66) BS05 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    1092 1eb2:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11881991
    1093 1eb7:A (2.4) BS03 CA 1.11.1.5 GO:0004130 ... P14532 8591033
    1094 1edh:A (2.0) BS01 CA ? GO:0005509 ... P09803 8598933
    1095 1edh:A (2.0) BS02 CA ? GO:0005509 ... P09803 8598933
    1096 1edh:A (2.0) BS03 CA ? GO:0005509 ... P09803 8598933
    1097 1edh:B (2.0) BS01 CA ? GO:0005509 ... P09803 8598933
    1098 1edh:B (2.0) BS02 CA ? GO:0005509 ... P09803 8598933
    1099 1edh:B (2.0) BS03 CA ? GO:0005509 ... P09803 8598933
    1100 1edm:B (1.5) BS01 CA 3.4.21.22 GO:0005509 ... P00740 7606779
    1101 1edm:C (1.5) BS01 CA 3.4.21.22 GO:0005509 ... P00740 7606779
    1102 1ee6:A (2.3) BS01 CA 4.2.2.2 GO:0004650 ... Q9RHW0 11717490
    1103 1egg:A (2.3) BS01 CA ? N/A P22897 10779515
    1104 1egg:B (2.3) BS01 CA ? N/A P22897 10779515
    1105 1egi:A (2.3) BS01 CA ? N/A P22897 10779515
    1106 1egi:B (2.3) BS01 CA ? N/A P22897 10779515
    1107 1egq:A (1.55) BS01 CA 3.4.21.64 GO:0004252 ... P06873 11438752
    1108 1egq:A (1.55) BS02 CA 3.4.21.64 GO:0004252 ... P06873 11438752
    1109 1egz:A (2.3) BS01 CA 3.2.1.4 GO:0000272 ... P07103 11501995
    1110 1egz:B (2.3) BS01 CA 3.2.1.4 GO:0000272 ... P07103 11501995
    1111 1egz:C (2.3) BS01 CA 3.2.1.4 GO:0000272 ... P07103 11501995
    1112 1eh2:A (-1.00) BS01 CA ? GO:0005509 ... P42566 9721102
    1113 1ej8:A (1.55) BS01 CA ? GO:0006801 ... P40202 10736160
    1114 1ek3:A (1.9) BS01 CA ? GO:0002250 ... P06312 N/A
    1115 1ek3:A (1.9) BS02 CA ? GO:0002250 ... P06312 N/A
    1116 1el1:A (1.9) BS01 CA 3.2.1.17 GO:0003796 ... P81708 N/A
    1117 1el1:B (1.9) BS01 CA 3.2.1.17 GO:0003796 ... P81708 N/A
    1118 1ela:A (2.0) BS02 CA 3.4.21.36 GO:0004252 ... P00772 7656008
    1119 1elb:A (2.1) BS02 CA 3.4.21.36 GO:0004252 ... P00772 7656008
    1120 1elc:A (1.75) BS02 CA 3.4.21.36 GO:0004252 ... P00772 7656008
    1121 1eld:E (2.0) BS02 CA 3.4.21.36 GO:0004252 ... P00772 7880814
    1122 1ele:E (2.0) BS02 CA 3.4.21.36 GO:0004252 ... P00772 7880814
    1123 1elf:A (1.7) BS01 CA 3.4.21.36 GO:0004252 ... P00772 7779821
    1124 1elg:A (1.65) BS01 CA 3.4.21.36 GO:0004252 ... P00772 7779821
    1125 1elt:A (1.61) BS01 CA 3.4.21.36 GO:0004252 ... Q7SIG3 15299762
    1126 1emn:A (-1.00) BS01 CA ? GO:0005509 ... P35555 8653794
    1127 1emn:A (-1.00) BS02 CA ? GO:0005509 ... P35555 8653794
    1128 1emo:A (-1.00) BS01 CA ? GO:0005509 ... P35555 8653794
    1129 1emo:A (-1.00) BS02 CA ? GO:0005509 ... P35555 8653794
    1130 1en7:A (2.4) BS02 CA 3.1.-.- GO:0004519 ... P13340 10075917
    1131 1en7:B (2.4) BS02 CA 3.1.-.- GO:0004519 ... P13340 10075917
    1132 1en7:B (2.4) BS03 CA 3.1.-.- GO:0004519 ... P13340 10075917
    1133 1ena:A (2.15) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8025105
    1134 1enc:A (1.95) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8025105
    1135 1enr:A (1.83) BS01 CA ? GO:0030246 ... P02866 8663112
    1136 1eo5:A (2.0) BS13 CA 2.4.1.19 GO:0003824 ... P43379 10869182
    1137 1eo5:A (2.0) BS14 CA 2.4.1.19 GO:0003824 ... P43379 10869182
    1138 1eo5:A (2.0) BS15 CA 2.4.1.19 GO:0003824 ... P43379 10869182
    1139 1eo7:A (2.48) BS11 CA 2.4.1.19 GO:0003824 ... P43379 10869182
    1140 1eo7:A (2.48) BS12 CA 2.4.1.19 GO:0003824 ... P43379 10869182
    1141 1eo7:A (2.48) BS13 CA 2.4.1.19 GO:0003824 ... P43379 10869182
    1142 1ept:B (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 7947985
    1143 1eqy:S (2.3) BS01 CA ? GO:0051015 ... P06396 8395021
    1144 1eqy:S (2.3) BS02 CA ? GO:0051015 ... P06396 8395021
    1145 1esa:A (1.65) BS01 CA 3.4.21.36 GO:0004252 ... P00772 8049229
    1146 1esb:A (2.3) BS02 CA 3.4.21.36 GO:0004252 ... P00772 8049229
    1147 1esl:A (2.0) BS01 CA ? N/A P16581 7509040
    1148 1esl:A (2.0) BS02 CA ? N/A P16581 7509040
    1149 1esl:A (2.0) BS03 CA ? N/A P16581 7509040
    1150 1esp:A (2.8) BS01 CA 3.4.24.28 GO:0004222 ... P05806 15299677
    1151 1esp:A (2.8) BS02 CA 3.4.24.28 GO:0004222 ... P05806 15299677
    1152 1esp:A (2.8) BS03 CA 3.4.24.28 GO:0004222 ... P05806 15299677
    1153 1esp:A (2.8) BS04 CA 3.4.24.28 GO:0004222 ... P05806 15299677
    1154 1esv:S (2.0) BS01 CA ? GO:0051015 ... P06396 10854330
    1155 1esv:S (2.0) BS02 CA ? GO:0051015 ... P06396 10854330
    1156 1eth:A (2.8) BS02 CA 3.1.1.3 GO:0004806 ... P00591 8663362
    1157 1eth:C (2.8) BS02 CA 3.1.1.3 GO:0004806 ... P00591 8663362
    1158 1eub:A (-1.00) BS03 CA 3.4.24.- GO:0004222 ... P45452 10926524
    1159 1eub:A (-1.00) BS04 CA 3.4.24.- GO:0004222 ... P45452 10926524
    1160 1ex0:A (2.0) BS01 CA 2.3.2.13 GO:0003810 ... P00488 N/A
    1161 1ex0:B (2.0) BS01 CA 2.3.2.13 GO:0003810 ... P00488 N/A
    1162 1ex9:A (2.54) BS01 CA 3.1.1.3 GO:0004806 ... P26876 10893416
    1163 1exr:A (1.0) BS01 CA ? GO:0005509 ... P07463 10966818
    1164 1exr:A (1.0) BS02 CA ? GO:0005509 ... P07463 10966818
    1165 1exr:A (1.0) BS03 CA ? GO:0005509 ... P07463 10966818
    1166 1exr:A (1.0) BS04 CA ? GO:0005509 ... P07463 10966818
    1167 1exz:A (2.3) BS01 CA ? GO:0005173 ... P21583 10884405
    1168 1ezm:A (1.5) BS02 CA 3.4.24.26 GO:0004222 ... P14756 1899664
    1169 1ezq:A (2.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 10966741
    1170 1ezr:A (2.5) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005509 ... P83851 10409664
    1171 1ezr:B (2.5) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005509 ... P83851 10409664
    1172 1ezr:C (2.5) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005509 ... P83851 10409664
    1173 1ezr:D (2.5) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005509 ... P83851 10409664
    1174 1ezs:C (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10843853
    1175 1ezs:D (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10843853
    1176 1ezu:C (2.4) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10843853
    1177 1ezu:D (2.4) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10843853
    1178 1f0o:A (2.5) BS03 CA 3.1.21.4 GO:0003677 ... P23657 10903853
    1179 1f0o:A (2.5) BS04 CA 3.1.21.4 GO:0003677 ... P23657 10903853
    1180 1f0o:B (2.5) BS03 CA 3.1.21.4 GO:0003677 ... P23657 10903853
    1181 1f0o:B (2.5) BS04 CA 3.1.21.4 GO:0003677 ... P23657 10903853
    1182 1f0r:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 10966741
    1183 1f0s:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 10966741
    1184 1f0t:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00760 10966741
    1185 1f0u:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00760 10966741
    1186 1f2n:A (2.8) BS01 CA ? GO:0005198 ... Q86527 11080631
    1187 1f2n:A (2.8) BS02 CA ? GO:0005198 ... Q86527 11080631
    1188 1f2n:B (2.8) BS01 CA ? GO:0005198 ... Q86527 11080631
    1189 1f2n:B (2.8) BS02 CA ? GO:0005198 ... Q86527 11080631
    1190 1f2n:C (2.8) BS01 CA ? GO:0005198 ... Q86527 11080631
    1191 1f2n:C (2.8) BS02 CA ? GO:0005198 ... Q86527 11080631
    1192 1f2o:A (1.7) BS03 CA 3.4.11.24 GO:0004177 ... P80561 11484227
    1193 1f2p:A (1.8) BS03 CA 3.4.11.24 GO:0004177 ... P80561 11484227
    1194 1f2s:E (1.79) BS02 CA 3.4.21.4 GO:0004175 ... P00760 10524768
    1195 1f4m:A (2.25) BS01 CA ? GO:0042802 ... P03051 11188696
    1196 1f4m:C (2.25) BS01 CA ? GO:0042802 ... P03051 11188696
    1197 1f4m:E (2.25) BS01 CA ? GO:0042802 ... P03051 11188696
    1198 1f4n:A (1.9) BS01 CA ? GO:0042802 ... P03051 11188696
    1199 1f4n:A (1.9) BS02 CA ? GO:0042802 ... P03051 11188696
    1200 1f4n:B (1.9) BS01 CA ? GO:0042802 ... P03051 11188696

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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