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BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    10201 2wza:A (2.082) BS02 CA ? N/A P16952 20138058
    10202 2wza:A (2.082) BS03 CA ? N/A P16952 20138058
    10203 2wze:A (2.5) BS03 CA 3.2.1.8 GO:0004553 ... P51584 20682344
    10204 2wze:B (2.5) BS03 CA 3.2.1.8 GO:0004553 ... P51584 20682344
    10205 2wzh:A (2.2) BS02 CA 3.2.1.169 N/A Q89ZI2 20067256
    10206 2wzi:A (1.9) BS01 CA 3.2.1.169 N/A Q89ZI2 20067256
    10207 2wzi:B (1.9) BS01 CA 3.2.1.169 N/A Q89ZI2 20067256
    10208 2wzs:A (2.25) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10209 2wzs:B (2.25) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10210 2wzs:C (2.25) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10211 2wzs:D (2.25) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10212 2wzs:E (2.25) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10213 2wzs:F (2.25) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10214 2wzs:G (2.25) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10215 2wzs:H (2.25) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10216 2x0g:B (2.2) BS01 CA ? GO:0000086 ... P0DP23 20103772
    10217 2x0g:B (2.2) BS02 CA ? GO:0000086 ... P0DP23 20103772
    10218 2x0g:B (2.2) BS03 CA ? GO:0000086 ... P0DP23 20103772
    10219 2x0g:B (2.2) BS04 CA ? GO:0000086 ... P0DP23 20103772
    10220 2x0h:B (2.21) BS02 CA 3.2.1.169 N/A Q89ZI2 20067256
    10221 2x49:A (1.5) BS01 CA ? GO:0009306 ... P0A1I3 20306492
    10222 2x51:B (2.2) BS01 CA ? GO:0005509 ... P62152 21278381
    10223 2x51:B (2.2) BS02 CA ? GO:0005509 ... P62152 21278381
    10224 2x51:B (2.2) BS03 CA ? GO:0005509 ... P62152 21278381
    10225 2x7q:A (2.0) BS01 CA ? GO:0003674 ... Q59X88 21494601
    10226 2x7q:A (2.0) BS02 CA ? GO:0003674 ... Q59X88 21494601
    10227 2x8h:A (1.9) BS03 CA 1.8.1.9 GO:0000166 ... Q962Y6 20659890
    10228 2x99:A (2.3) BS05 CA 1.8.1.9 GO:0000166 ... Q962Y6 20659890
    10229 2xb6:C (2.6) BS01 CA ? N/A Q63373 20543817
    10230 2xb6:D (2.6) BS01 CA ? N/A Q63373 20543817
    10231 2xbf:A (2.503) BS01 CA 2.3.2.26 GO:0004842 ... P46934 21399620
    10232 2xbv:A (1.66) BS02 CA 3.4.21.6 GO:0004252 ... P00742 20650636
    10233 2xbw:A (1.72) BS02 CA 3.4.21.6 GO:0004252 ... P00742 20650636
    10234 2xbx:A (1.85) BS02 CA 3.4.21.6 GO:0004252 ... P00742 20650636
    10235 2xby:A (2.02) BS02 CA 3.4.21.6 GO:0004252 ... P00742 20650636
    10236 2xc0:A (2.05) BS02 CA 3.4.21.6 GO:0004252 ... P00742 20650636
    10237 2xc2:A (1.56) BS01 CA 1.8.1.8 GO:0005829 ... Q8T9N5 21465612
    10238 2xc4:A (1.67) BS01 CA 3.4.21.6 GO:0004252 ... P00742 20650636
    10239 2xc5:A (1.7) BS02 CA 3.4.21.6 GO:0004252 ... P00742 20650636
    10240 2xco:A (3.1) BS01 CA 5.6.2.2 GO:0003677 ... P66937
    Q99XG5
    20686482
    10241 2xef:A (1.59) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 20726553
    10242 2xeg:A (1.59) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 20726553
    10243 2xei:A (1.69) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 20726553
    10244 2xej:A (1.78) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 20726553
    10245 2xf2:A (1.8) BS03 CA 1.11.1.6 GO:0004096 ... D9N167 N/A
    10246 2xf2:E (1.8) BS03 CA 1.11.1.6 GO:0004096 ... D9N167 N/A
    10247 2xfd:A (1.19) BS03 CA ? GO:0046872 ... D7GNB4 20659893
    10248 2xfd:A (1.19) BS04 CA ? GO:0046872 ... D7GNB4 20659893
    10249 2xfe:A (1.82) BS03 CA ? GO:0046872 ... D7GNB4 20659893
    10250 2xfe:A (1.82) BS04 CA ? GO:0046872 ... D7GNB4 20659893
    10251 2xfg:A (1.679) BS01 CA 3.2.1.4 GO:0004553 ... Q02934 26401442
    10252 2xfg:B (1.679) BS01 CA 3.2.1.4 GO:0005975 ... Q02934 26401442
    10253 2xfv:A (1.9) BS01 CA ? N/A P09959 20635421
    10254 2xfv:B (1.9) BS01 CA ? N/A P09959 20635421
    10255 2xgp:A (2.7) BS03 CA 2.7.7.7 GO:0003684 ... Q04049 21076032
    10256 2xgp:A (2.7) BS04 CA 2.7.7.7 GO:0003684 ... Q04049 21076032
    10257 2xgp:B (2.7) BS04 CA 2.7.7.7 GO:0003684 ... Q04049 21076032
    10258 2xgp:B (2.7) BS05 CA 2.7.7.7 GO:0003684 ... Q04049 21076032
    10259 2xgp:B (2.7) BS06 CA 2.7.7.7 GO:0003684 ... Q04049 21076032
    10260 2xgq:A (2.7) BS03 CA 2.7.7.7 GO:0003684 ... Q04049 21076032
    10261 2xgq:B (2.7) BS04 CA 2.7.7.7 GO:0003684 ... Q04049 21076032
    10262 2xgq:B (2.7) BS05 CA 2.7.7.7 GO:0003684 ... Q04049 21076032
    10263 2xgq:B (2.7) BS06 CA 2.7.7.7 GO:0003684 ... Q04049 21076032
    10264 2xgq:B (2.7) BS07 CA 2.7.7.7 GO:0003684 ... Q04049 21076032
    10265 2xhh:A (1.6) BS01 CA N/A N/A N/A 20659893
    10266 2xhi:A (1.55) BS03 CA 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 21220122
    10267 2xhn:A (1.52) BS01 CA 4.2.2.23 GO:0000272 ... Q00019 20851126
    10268 2xhn:B (1.52) BS01 CA 4.2.2.23 GO:0000272 ... Q00019 20851126
    10269 2xj7:A (2.0) BS02 CA 3.2.1.169 GO:0005975 ... Q89ZI2 20851343
    10270 2xj7:B (2.0) BS02 CA 3.2.1.169 GO:0005975 ... Q89ZI2 20851343
    10271 2xjp:A (0.95) BS01 CA ? N/A P38894 21149680
    10272 2xjp:A (0.95) BS02 CA ? N/A P38894 21149680
    10273 2xjr:A (1.25) BS03 CA ? N/A P38894 21149680
    10274 2xjr:A (1.25) BS04 CA ? N/A P38894 21149680
    10275 2xjs:A (1.3) BS03 CA ? N/A P38894 21149680
    10276 2xjs:A (1.3) BS04 CA ? N/A P38894 21149680
    10277 2xjt:A (1.2) BS03 CA ? N/A P38894 21149680
    10278 2xjt:A (1.2) BS04 CA ? N/A P38894 21149680
    10279 2xju:A (1.7) BS03 CA ? N/A P38894 21149680
    10280 2xju:A (1.7) BS04 CA ? N/A P38894 21149680
    10281 2xjv:A (1.74) BS01 CA ? N/A P38894 21149680
    10282 2xjv:A (1.74) BS02 CA ? N/A P38894 21149680
    10283 2xkq:D (2.4) BS02 CA 1.16.-.- GO:0005737 ... P0CB53 21056572
    10284 2xmo:A (1.7) BS03 CA ? GO:0016787 ... Q8Y432 21246635
    10285 2xmo:B (1.7) BS03 CA ? GO:0016787 ... Q8Y432 21246635
    10286 2xmr:A (2.0) BS01 CA ? N/A Q9UN36 21247902
    10287 2xn6:A (1.29) BS01 CA ? GO:0004867 ... P05543 21325280
    10288 2xn6:A (1.29) BS02 CA ? GO:0004867 ... P05543 21325280
    10289 2xn6:A (1.29) BS03 CA ? GO:0004867 ... P05543 21325280
    10290 2xn7:A (1.43) BS03 CA ? GO:0004867 ... P05543 21325280
    10291 2xo2:A (2.8) BS01 CA ? GO:0001786 ... P08758 N/A
    10292 2xo2:A (2.8) BS02 CA ? GO:0001786 ... P08758 N/A
    10293 2xo3:A (2.3) BS01 CA ? GO:0001786 ... P08758 N/A
    10294 2xo3:A (2.3) BS02 CA ? GO:0001786 ... P08758 N/A
    10295 2xom:A (0.95) BS03 CA 3.2.1.89 N/A Q9X0S8 20826814
    10296 2xon:A (1.4) BS03 CA 3.2.1.89 N/A Q9X0S8 20826814
    10297 2xon:L (1.4) BS03 CA 3.2.1.89 N/A Q9X0S8 20826814
    10298 2xqg:A (2.3) BS04 CA 3.1.1.8 GO:0001540 ... P06276 21454498
    10299 2xqk:A (2.4) BS03 CA 3.1.1.8 GO:0001540 ... P06276 21454498
    10300 2xqx:A (2.01) BS01 CA ? N/A A0A0H2UNT5 21505233
    10301 2xqx:B (2.01) BS01 CA ? N/A A0A0H2UNT5 21505233
    10302 2xr5:A (1.42) BS02 CA ? N/A Q9NNX6 23360500
    10303 2xr5:A (1.42) BS03 CA ? N/A Q9NNX6 23360500
    10304 2xr5:A (1.42) BS04 CA ? N/A Q9NNX6 23360500
    10305 2xr6:A (1.35) BS02 CA ? N/A Q9NNX6 24749535
    10306 2xr6:A (1.35) BS03 CA ? N/A Q9NNX6 24749535
    10307 2xr6:A (1.35) BS04 CA ? N/A Q9NNX6 24749535
    10308 2xr9:A (2.05) BS03 CA 3.1.4.39 GO:0001953 ... Q64610 21240271
    10309 2xrc:A (2.69) BS01 CA 3.4.21.45 GO:0004252 ... P05156 21768352
    10310 2xrc:A (2.69) BS02 CA 3.4.21.45 GO:0004252 ... P05156 21768352
    10311 2xrc:B (2.69) BS01 CA 3.4.21.45 GO:0004252 ... P05156 21768352
    10312 2xrc:B (2.69) BS02 CA 3.4.21.45 GO:0004252 ... P05156 21768352
    10313 2xrc:C (2.69) BS01 CA 3.4.21.45 GO:0004252 ... P05156 21768352
    10314 2xrc:C (2.69) BS02 CA 3.4.21.45 GO:0004252 ... P05156 21768352
    10315 2xrc:D (2.69) BS01 CA 3.4.21.45 GO:0004252 ... P05156 21768352
    10316 2xrc:D (2.69) BS02 CA 3.4.21.45 GO:0004252 ... P05156 21768352
    10317 2xrg:A (3.2) BS04 CA 3.1.4.39 GO:0003676 ... Q64610 21240271
    10318 2xrm:A (2.6) BS01 CA 3.4.21.62 GO:0004252 ... D0AB41 21307308
    10319 2xsg:A (2.0) BS01 CA N/A GO:0005975 ... N/A 23159880
    10320 2xsg:B (2.0) BS01 CA N/A GO:0005975 ... N/A 23159880
    10321 2xt6:A (2.74) BS03 CA 1.2.4.2
    2.2.1.5
    2.3.1.61
    4.1.1.71
    GO:0000287 ... A0R2B1 21867916
    10322 2xt6:B (2.74) BS04 CA 1.2.4.2
    2.2.1.5
    2.3.1.61
    4.1.1.71
    GO:0000287 ... A0R2B1 21867916
    10323 2xta:A (2.2) BS03 CA 1.2.4.2
    2.2.1.5
    2.3.1.61
    4.1.1.71
    GO:0016624 ... A0R2B1 21867916
    10324 2xta:B (2.2) BS04 CA 1.2.4.2
    2.2.1.5
    2.3.1.61
    4.1.1.71
    GO:0016624 ... A0R2B1 21867916
    10325 2xta:C (2.2) BS03 CA 1.2.4.2
    2.2.1.5
    2.3.1.61
    4.1.1.71
    GO:0016624 ... A0R2B1 21867916
    10326 2xta:D (2.2) BS04 CA 1.2.4.2
    2.2.1.5
    2.3.1.61
    4.1.1.71
    GO:0016624 ... A0R2B1 21867916
    10327 2xtj:A (2.7) BS01 CA 3.4.21.- GO:0004252 ... Q8NBP7 20959675
    10328 2xtt:B (0.93) BS01 CA 3.4.21.4 GO:0004175 ... P00760 21097875
    10329 2xvt:C (2.05) BS01 CA ? GO:0006886 ... O60895 N/A
    10330 2xvt:C (2.05) BS02 CA ? GO:0006886 ... O60895 N/A
    10331 2xvt:F (2.05) BS01 CA ? GO:0006886 ... O60895 N/A
    10332 2xvt:F (2.05) BS02 CA ? GO:0006886 ... O60895 N/A
    10333 2xwg:A (2.4) BS01 CA ? N/A Q0Z952 21358052
    10334 2xwg:A (2.4) BS02 CA ? N/A Q0Z952 21358052
    10335 2xwg:B (2.4) BS01 CA ? N/A Q0Z952 21358052
    10336 2xwg:C (2.4) BS01 CA ? N/A Q0Z952 21358052
    10337 2xxl:A (1.8) BS01 CA 3.4.21.- GO:0004252 ... Q9VB68 21310954
    10338 2xxl:B (1.8) BS01 CA 3.4.21.- GO:0004252 ... Q9VB68 21310954
    10339 2xy8:A (-1.00) BS01 CA 2.7.7.7 GO:0003676 ... P03007 21626213
    10340 2xz1:B (3.35) BS03 CA 1.14.19.2 GO:0005515 ... P22337 21930947
    10341 2xzv:A (1.6) BS01 CA 3.1.3.16 GO:0004722 ... Q8DGS1 21310952
    10342 2y09:A (1.7) BS01 CA 3.1.3.16 GO:0004722 ... Q8DGS1 21310952
    10343 2y09:A (1.7) BS02 CA 3.1.3.16 GO:0004722 ... Q8DGS1 21310952
    10344 2y1m:A (2.67) BS03 CA 2.3.2.27 GO:0001784 ... P22681 22266821
    10345 2y1m:B (2.67) BS03 CA 2.3.2.27 GO:0001784 ... P22681 22266821
    10346 2y1m:C (2.67) BS03 CA 2.3.2.27 GO:0001784 ... P22681 22266821
    10347 2y1m:D (2.67) BS03 CA 2.3.2.27 GO:0001784 ... P22681 22266821
    10348 2y1m:E (2.67) BS03 CA 2.3.2.27 GO:0001784 ... P22681 22266821
    10349 2y1m:F (2.67) BS03 CA 2.3.2.27 GO:0001784 ... P22681 22266821
    10350 2y1n:A (1.999) BS04 CA 2.3.2.27 GO:0001784 ... P22681 22266821
    10351 2y1n:C (1.999) BS04 CA 2.3.2.27 GO:0001784 ... P22681 22266821
    10352 2y3c:A (1.4) BS01 CA ? GO:0046872 ... Q73KE9 21873231
    10353 2y3c:A (1.4) BS02 CA ? GO:0046872 ... Q73KE9 21873231
    10354 2y3n:B (1.9) BS01 CA 3.2.1.91 GO:0000272 ... Q6UB36 N/A
    10355 2y3n:B (1.9) BS02 CA 3.2.1.91 GO:0000272 ... Q6UB36 N/A
    10356 2y3n:D (1.9) BS01 CA 3.2.1.91 GO:0000272 ... Q6UB36 N/A
    10357 2y3n:D (1.9) BS02 CA 3.2.1.91 GO:0000272 ... Q6UB36 N/A
    10358 2y4q:A (-1.00) BS01 CA ? GO:0005509 ... Q13563 24990821
    10359 2y4s:A (2.1) BS09 CA 3.2.1.41 GO:0004553 ... Q9S7S8 20863834
    10360 2y4s:A (2.1) BS10 CA 3.2.1.41 GO:0004553 ... Q9S7S8 20863834
    10361 2y4v:A (1.8) BS02 CA ? GO:0000086 ... P0DP23 N/A
    10362 2y4v:A (1.8) BS03 CA ? GO:0000086 ... P0DP23 N/A
    10363 2y4v:A (1.8) BS04 CA ? GO:0000086 ... P0DP23 N/A
    10364 2y4v:A (1.8) BS05 CA ? GO:0000086 ... P0DP23 N/A
    10365 2y5e:A (2.49) BS03 CA 3.2.1.41 GO:0004553 ... O48541 20863834
    10366 2y5e:A (2.49) BS04 CA 3.2.1.41 GO:0004553 ... O48541 20863834
    10367 2y5i:A (2.03) BS01 CA ? GO:0005509 ... Q503K9 21756915
    10368 2y5i:A (2.03) BS02 CA ? GO:0005509 ... Q503K9 21756915
    10369 2y5i:B (2.03) BS01 CA ? GO:0005509 ... Q503K9 21756915
    10370 2y5i:B (2.03) BS02 CA ? GO:0005509 ... Q503K9 21756915
    10371 2y5i:C (2.03) BS01 CA ? GO:0005509 ... Q503K9 21756915
    10372 2y5i:C (2.03) BS02 CA ? GO:0005509 ... Q503K9 21756915
    10373 2y5i:D (2.03) BS01 CA ? GO:0005509 ... Q503K9 21756915
    10374 2y5i:D (2.03) BS02 CA ? GO:0005509 ... Q503K9 21756915
    10375 2y5i:E (2.03) BS01 CA ? GO:0005509 ... Q503K9 21756915
    10376 2y5i:E (2.03) BS02 CA ? GO:0005509 ... Q503K9 21756915
    10377 2y5i:F (2.03) BS01 CA ? GO:0005509 ... Q503K9 21756915
    10378 2y5i:F (2.03) BS02 CA ? GO:0005509 ... Q503K9 21756915
    10379 2y5p:A (1.3) BS01 CA ? N/A P0DQD2 21345802
    10380 2y5p:B (1.3) BS01 CA ? N/A P0DQD2 21345802
    10381 2y64:A (1.4) BS05 CA 3.2.1.8 GO:0016798 ... Q7WTN6 22434778
    10382 2y64:A (1.4) BS06 CA 3.2.1.8 GO:0016798 ... Q7WTN6 22434778
    10383 2y6c:A (1.7) BS01 CA 3.4.24.23 GO:0004222 ... P09237 21520417
    10384 2y6c:A (1.7) BS02 CA 3.4.24.23 GO:0004222 ... P09237 21520417
    10385 2y6d:A (1.6) BS01 CA 3.4.24.23 GO:0004222 ... P09237 21520417
    10386 2y6d:A (1.6) BS02 CA 3.4.24.23 GO:0004222 ... P09237 21520417
    10387 2y6g:A (1.3) BS03 CA 3.2.1.8 GO:0016798 ... Q7WTN6 22434778
    10388 2y6g:A (1.3) BS04 CA 3.2.1.8 GO:0016798 ... Q7WTN6 22434778
    10389 2y6h:A (1.08) BS01 CA 3.2.1.8 GO:0016798 ... Q7WTN6 22434778
    10390 2y6h:A (1.08) BS02 CA 3.2.1.8 GO:0016798 ... Q7WTN6 22434778
    10391 2y6j:A (1.7) BS01 CA 3.2.1.8 GO:0016798 ... Q7WTN6 22434778
    10392 2y6k:A (1.36) BS02 CA 3.2.1.8 GO:0016798 ... Q7WTN6 22434778
    10393 2y6k:A (1.36) BS03 CA 3.2.1.8 GO:0016798 ... Q7WTN6 22434778
    10394 2y6l:A (1.28) BS03 CA 3.2.1.8 GO:0016798 ... Q7WTN6 22434778
    10395 2y6l:A (1.28) BS04 CA 3.2.1.8 GO:0016798 ... Q7WTN6 22434778
    10396 2y73:A (2.6) BS02 CA 1.4.3.21 GO:0005507 ... Q16853 21585208
    10397 2y73:A (2.6) BS03 CA 1.4.3.21 GO:0005507 ... Q16853 21585208
    10398 2y73:B (2.6) BS02 CA 1.4.3.21 GO:0005507 ... Q16853 21585208
    10399 2y73:B (2.6) BS03 CA 1.4.3.21 GO:0005507 ... Q16853 21585208
    10400 2y74:A (2.95) BS02 CA 1.4.3.21 GO:0005507 ... Q16853 21585208

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218