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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    10001 2w7p:A (3.71) BS05 CA 2.7.7.7 GO:0003684 ... Q9UBT6 19542228
    10002 2w7p:B (3.71) BS04 CA 2.7.7.7 GO:0003684 ... Q9UBT6 19542228
    10003 2w7p:B (3.71) BS05 CA 2.7.7.7 GO:0003684 ... Q9UBT6 19542228
    10004 2w86:A (1.8) BS01 CA ? GO:0005509 ... P35555 19446531
    10005 2w86:A (1.8) BS02 CA ? GO:0005509 ... P35555 19446531
    10006 2w87:A (1.6) BS01 CA 3.2.1.- GO:0030246 ... Q51815 19218457
    10007 2w87:A (1.6) BS02 CA 3.2.1.- GO:0030246 ... Q51815 19218457
    10008 2w87:B (1.6) BS02 CA 3.2.1.- GO:0030246 ... Q51815 19218457
    10009 2w87:B (1.6) BS03 CA 3.2.1.- GO:0030246 ... Q51815 19218457
    10010 2w94:A (1.8) BS01 CA ? GO:0000281 ... P02886 20580724
    10011 2w94:B (1.8) BS01 CA ? GO:0000281 ... P02886 20580724
    10012 2w94:C (1.8) BS01 CA ? GO:0000281 ... P02886 20580724
    10013 2w95:A (1.75) BS01 CA ? GO:0000281 ... P02886 20580724
    10014 2w95:B (1.75) BS01 CA ? GO:0000281 ... P02886 20580724
    10015 2w95:C (1.75) BS01 CA ? GO:0000281 ... P02886 20580724
    10016 2wbf:X (1.6) BS01 CA 3.4.22.- GO:0006508 ... Q9TY95 19591843
    10017 2wbf:X (1.6) BS02 CA 3.4.22.- GO:0006508 ... Q9TY95 19591843
    10018 2wbx:A (1.5) BS01 CA ? GO:0005509 ... Q99PF4 20399731
    10019 2wca:A (2.3) BS02 CA 3.2.1.169 GO:0005975 ... Q89ZI2 19499593
    10020 2wcp:A (1.98) BS01 CA ? GO:0005509 ... Q99PF4 20399731
    10021 2wcp:A (1.98) BS02 CA ? GO:0005509 ... Q99PF4 20399731
    10022 2wcp:A (1.98) BS03 CA ? GO:0005509 ... Q99PF4 20399731
    10023 2wd0:A (2.74) BS01 CA ? GO:0005509 ... Q99PF4 20399731
    10024 2wd0:A (2.74) BS02 CA ? GO:0005509 ... Q99PF4 20399731
    10025 2wd0:A (2.74) BS03 CA ? GO:0005509 ... Q99PF4 20399731
    10026 2wd0:C (2.74) BS01 CA ? GO:0005509 ... Q99PF4 20399731
    10027 2wd0:C (2.74) BS02 CA ? GO:0005509 ... Q99PF4 20399731
    10028 2wd0:C (2.74) BS03 CA ? GO:0005509 ... Q99PF4 20399731
    10029 2wd6:A (2.3) BS01 CA ? N/A P16952 19609934
    10030 2wd6:B (2.3) BS01 CA ? N/A P16952 19609934
    10031 2wdb:A (2.03) BS01 CA 3.2.1.35 N/A P26831 19422833
    10032 2wdb:B (2.03) BS01 CA 3.2.1.35 N/A P26831 19422833
    10033 2wdb:C (2.03) BS01 CA 3.2.1.35 N/A P26831 19422833
    10034 2wdb:D (2.03) BS01 CA 3.2.1.35 N/A P26831 19422833
    10035 2wel:D (1.9) BS01 CA ? GO:0000086 ... P0DP23 20668654
    10036 2wel:D (1.9) BS02 CA ? GO:0000086 ... P0DP23 20668654
    10037 2wel:D (1.9) BS03 CA ? GO:0000086 ... P0DP23 20668654
    10038 2wel:D (1.9) BS04 CA ? GO:0000086 ... P0DP23 20668654
    10039 2wfk:A (2.3) BS01 CA ? N/A Q6S9S1 19948735
    10040 2wfk:B (2.3) BS01 CA ? N/A Q6S9S1 19948735
    10041 2wfk:C (2.3) BS01 CA ? N/A Q6S9S1 19948735
    10042 2wfk:D (2.3) BS01 CA ? N/A Q6S9S1 19948735
    10043 2wfk:E (2.3) BS01 CA ? N/A Q6S9S1 19948735
    10044 2wfr:A (1.95) BS02 CA 3.1.-.- GO:0007267 ... O43323 19561611
    10045 2wfr:A (1.95) BS03 CA 3.1.-.- GO:0007267 ... O43323 19561611
    10046 2wfx:A (3.2) BS02 CA 3.1.-.- GO:0007267 ... Q62226 19561611
    10047 2wfx:A (3.2) BS03 CA 3.1.-.- GO:0007267 ... Q62226 19561611
    10048 2wg7:A (2.0) BS01 CA 3.1.1.4 GO:0004623 ... Q9XG81 19457861
    10049 2wg7:B (2.0) BS01 CA 3.1.1.4 GO:0004623 ... Q9XG81 19457861
    10050 2wg8:A (2.3) BS01 CA 3.1.1.4 GO:0004623 ... Q9XG81 19457861
    10051 2wg8:B (2.3) BS01 CA 3.1.1.4 GO:0004623 ... Q9XG81 19457861
    10052 2wg8:C (2.3) BS01 CA 3.1.1.4 GO:0004623 ... Q9XG81 19457861
    10053 2wg9:A (2.0) BS01 CA 3.1.1.4 GO:0004623 ... Q9XG81 19457861
    10054 2wg9:B (2.0) BS01 CA 3.1.1.4 GO:0004623 ... Q9XG81 19457861
    10055 2wgq:A (2.5) BS02 CA 1.4.3.21 GO:0005507 ... P46883 N/A
    10056 2wgq:A (2.5) BS03 CA 1.4.3.21 GO:0005507 ... P46883 N/A
    10057 2wgq:B (2.5) BS02 CA 1.4.3.21 GO:0005507 ... P46883 N/A
    10058 2wgq:B (2.5) BS03 CA 1.4.3.21 GO:0005507 ... P46883 N/A
    10059 2wh0:D (2.25) BS02 CA ? GO:0000122 ... P63104 19662078
    10060 2whk:A (1.7) BS01 CA 3.2.1.78 GO:0000272 ... O05512 19441796
    10061 2whk:A (1.7) BS02 CA 3.2.1.78 GO:0000272 ... O05512 19441796
    10062 2whv:A (2.36) BS01 CA ? GO:0005509 ... Q99PF4 20399731
    10063 2whv:A (2.36) BS02 CA ? GO:0005509 ... Q99PF4 20399731
    10064 2whv:A (2.36) BS03 CA ? GO:0005509 ... Q99PF4 20399731
    10065 2whv:A (2.36) BS04 CA ? GO:0005509 ... Q99PF4 20399731
    10066 2whz:A (1.75) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    10067 2whz:A (1.75) BS05 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    10068 2whz:A (1.75) BS06 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    10069 2whz:A (1.75) BS07 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    10070 2wi0:A (1.95) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    10071 2wi0:A (1.95) BS05 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    10072 2wi0:A (1.95) BS06 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    10073 2wi0:A (1.95) BS07 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    10074 2wii:A (2.7) BS01 CA ? GO:0004866 ... P01024 19503104
    10075 2wjs:A (2.8) BS01 CA ? N/A Q60675 19553699
    10076 2wjs:A (2.8) BS02 CA ? N/A Q60675 19553699
    10077 2wkp:A (1.9) BS04 CA 2.7.11.1
    3.6.5.2
    GO:0001764 ... O49003
    P63000
    19693014
    10078 2wl3:A (2.2) BS02 CA ? GO:0003824 ... Q6REQ5 20810655
    10079 2wm4:A (2.11) BS03 CA 1.14.15.14
    1.14.15.28
    GO:0004497 ... P9WPP3 19933331
    10080 2wn2:A (1.82) BS02 CA ? GO:0000281 ... P02886 20580724
    10081 2wn2:B (1.82) BS02 CA ? GO:0000281 ... P02886 20580724
    10082 2wn2:C (1.82) BS02 CA ? GO:0000281 ... P02886 20580724
    10083 2wn3:A (1.59) BS01 CA ? GO:0000281 ... P02886 20580724
    10084 2wn3:B (1.59) BS01 CA ? GO:0000281 ... P02886 20580724
    10085 2wn3:C (1.59) BS01 CA ? GO:0000281 ... P02886 20580724
    10086 2wnd:A (1.6) BS01 CA ? GO:0000302 ... P31151 19844956
    10087 2wno:A (2.3) BS01 CA 3.1.1.- N/A P98066 26468290
    10088 2wnp:F (1.21) BS01 CA ? N/A O00602 20032467
    10089 2wnv:B (1.25) BS01 CA ? N/A P02746 20548024
    10090 2wnv:E (1.25) BS01 CA ? N/A P02746 20548024
    10091 2wnx:A (1.31) BS01 CA 3.2.1.4 GO:0005975 ... A3DJ30 20057047
    10092 2wo4:A (1.85) BS01 CA 3.2.1.4 GO:0005975 ... A3DJ30 20057047
    10093 2wo8:A (2.0) BS03 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10094 2wo8:B (2.0) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10095 2wo8:B (2.0) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10096 2wo8:C (2.0) BS03 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10097 2wo8:D (2.0) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10098 2wo8:D (2.0) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10099 2wo9:A (1.7) BS03 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10100 2wo9:B (1.7) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10101 2wo9:B (1.7) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10102 2wo9:B (1.7) BS06 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10103 2wo9:C (1.7) BS03 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10104 2wo9:D (1.7) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10105 2wo9:D (1.7) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10106 2woa:A (2.3) BS03 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10107 2woa:B (2.3) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10108 2woa:B (2.3) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10109 2woa:B (2.3) BS06 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10110 2woa:C (2.3) BS03 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10111 2woa:C (2.3) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10112 2woa:C (2.3) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10113 2woa:D (2.3) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10114 2woa:D (2.3) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19703773
    10115 2wob:A (2.0) BS01 CA 3.2.1.4 GO:0005975 ... A3DJ30 20057047
    10116 2wob:C (2.0) BS01 CA 3.2.1.4 GO:0005975 ... A3DJ30 20057047
    10117 2wob:E (2.0) BS01 CA 3.2.1.4 GO:0005975 ... A3DJ30 20057047
    10118 2woh:A (2.7) BS02 CA 1.4.3.21 GO:0005507 ... P46883 20052994
    10119 2woh:B (2.7) BS02 CA 1.4.3.21 GO:0005507 ... P46883 20052994
    10120 2wor:A (1.7) BS01 CA ? GO:0000302 ... P31151 19810752
    10121 2wos:A (1.7) BS01 CA ? GO:0000302 ... P31151 19810752
    10122 2woy:A (1.5) BS01 CA ? N/A P16952 20138058
    10123 2woy:A (1.5) BS02 CA ? N/A P16952 20138058
    10124 2wp4:B (2.49) BS01 CA 2.8.1.12 GO:0005829 ... P9WJR3 N/A
    10125 2wph:S (1.5) BS02 CA 3.4.21.22 GO:0004252 ... P00740 20004170
    10126 2wpi:S (1.99) BS02 CA 3.4.21.22 GO:0004252 ... P00740 20004170
    10127 2wpj:S (1.6) BS02 CA 3.4.21.22 GO:0004252 ... P00740 20004170
    10128 2wpk:S (2.21) BS02 CA 3.4.21.22 GO:0004252 ... P00740 20004170
    10129 2wpm:S (2.0) BS02 CA 3.4.21.22 GO:0004252 ... P00740 20004170
    10130 2wq8:A (2.19) BS02 CA 1.1.3.9 GO:0005576 ... P0CS93 21526835
    10131 2wqd:A (2.4) BS01 CA 2.7.3.9 GO:0003824 ... P51183 19801641
    10132 2wqs:A (1.7) BS01 CA ? N/A P16952 20138058
    10133 2wqs:A (1.7) BS02 CA ? N/A P16952 20138058
    10134 2wqz:C (3.9) BS01 CA ? N/A Q63373 18093521
    10135 2wqz:D (3.9) BS01 CA ? N/A Q63373 18093521
    10136 2wr9:A (1.75) BS02 CA ? GO:0046872 ... B4EH87 19770128
    10137 2wr9:A (1.75) BS03 CA ? GO:0046872 ... B4EH87 19770128
    10138 2wr9:B (1.75) BS01 CA ? GO:0046872 ... B4EH87 19770128
    10139 2wr9:B (1.75) BS02 CA ? GO:0046872 ... B4EH87 19770128
    10140 2wr9:C (1.75) BS02 CA ? GO:0046872 ... B4EH87 19770128
    10141 2wr9:C (1.75) BS03 CA ? GO:0046872 ... B4EH87 19770128
    10142 2wr9:D (1.75) BS02 CA ? GO:0046872 ... B4EH87 19770128
    10143 2wr9:D (1.75) BS03 CA ? GO:0046872 ... B4EH87 19770128
    10144 2wra:A (1.1) BS02 CA ? GO:0046872 ... B4EH87 19770128
    10145 2wra:A (1.1) BS03 CA ? GO:0046872 ... B4EH87 19770128
    10146 2wtf:A (2.5) BS04 CA 2.7.7.7 GO:0003684 ... Q04049 20333640
    10147 2wtf:A (2.5) BS05 CA 2.7.7.7 GO:0003684 ... Q04049 20333640
    10148 2wtf:A (2.5) BS06 CA 2.7.7.7 GO:0003684 ... Q04049 20333640
    10149 2wtf:B (2.5) BS03 CA 2.7.7.7 GO:0003684 ... Q04049 20333640
    10150 2wtf:B (2.5) BS04 CA 2.7.7.7 GO:0003684 ... Q04049 20333640
    10151 2wtf:B (2.5) BS06 CA 2.7.7.7 GO:0003684 ... Q04049 20333640
    10152 2wtf:B (2.5) BS07 CA 2.7.7.7 GO:0003684 ... Q04049 20333640
    10153 2wtf:B (2.5) BS08 CA 2.7.7.7 GO:0003684 ... Q04049 20333640
    10154 2wuv:A (2.24) BS01 CA 3.4.21.62 GO:0004252 ... P00780 20099851
    10155 2wuw:E (2.23) BS01 CA 3.4.21.62 GO:0004252 ... P00780 20099851
    10156 2wvx:A (1.9) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10157 2wvx:B (1.9) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10158 2wvx:C (1.9) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10159 2wvx:D (1.9) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10160 2wvz:A (2.4) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10161 2wvz:B (2.4) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10162 2wvz:C (2.4) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10163 2wvz:D (2.4) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10164 2ww0:A (2.8) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10165 2ww0:B (2.8) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10166 2ww0:C (2.8) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10167 2ww0:D (2.8) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10168 2ww0:E (2.8) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10169 2ww0:F (2.8) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10170 2ww0:G (2.8) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10171 2ww0:H (2.8) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    10172 2ww3:A (2.1) BS03 CA ? GO:0000224 ... Q8A0N1 20081828
    10173 2ww3:B (2.1) BS03 CA ? GO:0000224 ... Q8A0N1 20081828
    10174 2ww3:C (2.1) BS03 CA ? GO:0000224 ... Q8A0N1 20081828
    10175 2ww3:D (2.1) BS03 CA ? GO:0000224 ... Q8A0N1 20081828
    10176 2ww3:E (2.1) BS03 CA ? GO:0000224 ... Q8A0N1 20081828
    10177 2ww3:F (2.1) BS03 CA ? GO:0000224 ... Q8A0N1 20081828
    10178 2ww8:A (1.9) BS02 CA ? GO:0016020 ... A0A0H2UNT6 20152157
    10179 2ww8:A (1.9) BS03 CA ? GO:0016020 ... A0A0H2UNT6 20152157
    10180 2wxt:A (2.0) BS02 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    10181 2wxu:A (1.8) BS02 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    10182 2wxu:A (1.8) BS03 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    10183 2wxu:A (1.8) BS04 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    10184 2wxu:A (1.8) BS05 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    10185 2wy6:B (3.2) BS02 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    10186 2wy6:B (3.2) BS03 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    10187 2wy6:C (3.2) BS02 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    10188 2wyf:A (2.4) BS03 CA ? GO:0005737 ... Q05097 20410292
    10189 2wyf:B (2.4) BS01 CA ? GO:0005737 ... Q05097 20410292
    10190 2wyf:C (2.4) BS03 CA ? GO:0005737 ... Q05097 20410292
    10191 2wyf:D (2.4) BS02 CA ? GO:0005737 ... Q05097 20410292
    10192 2wyf:E (2.4) BS01 CA ? GO:0005737 ... Q05097 20410292
    10193 2wyf:F (2.4) BS02 CA ? GO:0005737 ... Q05097 20410292
    10194 2wyf:G (2.4) BS02 CA ? GO:0005737 ... Q05097 20410292
    10195 2wyf:H (2.4) BS02 CA ? GO:0005737 ... Q05097 20410292
    10196 2wys:A (2.75) BS03 CA 3.2.1.8 GO:0004553 ... P51584 20682344
    10197 2wys:A (2.75) BS04 CA 3.2.1.8 GO:0004553 ... P51584 20682344
    10198 2wys:B (2.75) BS03 CA 3.2.1.8 GO:0004553 ... P51584 20682344
    10199 2wz8:A (1.5) BS01 CA N/A GO:0030246 ... N/A 20496884
    10200 2wza:A (2.082) BS01 CA ? N/A P16952 20138058

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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