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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9801 2vud:C (1.7) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    9802 2vud:C (1.7) BS03 CA ? GO:0030246 ... Q9HYN5 N/A
    9803 2vud:D (1.7) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    9804 2vud:D (1.7) BS03 CA ? GO:0030246 ... Q9HYN5 N/A
    9805 2vuv:A (1.3) BS01 CA ? GO:0046872 ... Q3KVL7 18687680
    9806 2vuz:A (1.7) BS03 CA ? GO:0046872 ... Q3KVL7 18687680
    9807 2vvc:A (1.95) BS02 CA 3.4.21.6 GO:0004252 ... P00742 19200624
    9808 2vvd:A (2.26) BS01 CA ? N/A Q9XJR3 18775333
    9809 2vvd:A (2.26) BS02 CA ? N/A Q9XJR3 18775333
    9810 2vve:A (1.77) BS01 CA ? N/A Q9XJR3 18775333
    9811 2vve:B (1.77) BS01 CA ? N/A Q9XJR3 18775333
    9812 2vve:B (1.77) BS02 CA ? N/A Q9XJR3 18775333
    9813 2vve:B (1.77) BS03 CA ? N/A Q9XJR3 18775333
    9814 2vvf:A (2.5) BS01 CA ? GO:0019028 ... P15794 18775333
    9815 2vvf:B (2.5) BS01 CA ? GO:0019028 ... P15794 18775333
    9816 2vvf:C (2.5) BS01 CA ? GO:0019028 ... P15794 18775333
    9817 2vvf:D (2.5) BS01 CA ? GO:0019028 ... P15794 18775333
    9818 2vvf:E (2.5) BS01 CA ? GO:0019028 ... P15794 18775333
    9819 2vvf:F (2.5) BS01 CA ? GO:0019028 ... P15794 18775333
    9820 2vvu:A (2.3) BS02 CA 3.4.21.6 GO:0004252 ... P00742 19200624
    9821 2vvv:A (1.73) BS02 CA 3.4.21.6 GO:0004252 ... P00742 19200624
    9822 2vwl:A (1.8) BS02 CA 3.4.21.6 GO:0004252 ... P00742 19200624
    9823 2vwn:A (1.61) BS02 CA 3.4.21.6 GO:0004252 ... P00742 19200624
    9824 2vwo:A (1.6) BS02 CA 3.4.21.6 GO:0004252 ... P00742 19200624
    9825 2vxj:A (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    9826 2vxj:B (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    9827 2vxj:C (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    9828 2vxj:D (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    9829 2vxj:E (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    9830 2vxj:F (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    9831 2vxj:G (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    9832 2vxj:H (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    9833 2vxj:I (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    9834 2vxj:J (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    9835 2vxj:K (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    9836 2vxj:L (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    9837 2vxj:M (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    9838 2vxj:N (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    9839 2vxj:O (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    9840 2vxj:P (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    9841 2vxj:Q (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    9842 2vxj:R (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    9843 2vxj:S (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    9844 2vxj:T (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    9845 2vxj:U (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    9846 2vxj:V (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    9847 2vxj:W (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    9848 2vxj:X (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    9849 2vy0:A (2.16) BS01 CA 3.2.1.39 GO:0004553 ... O73951 19154353
    9850 2vy0:B (2.16) BS01 CA 3.2.1.39 GO:0004553 ... O73951 19154353
    9851 2vyo:A (1.5) BS01 CA 3.5.1.41 GO:0004099 ... Q8SU65 19472335
    9852 2vyp:B (2.35) BS02 CA 3.6.4.- GO:0000287 ... P68135 19035596
    9853 2vyp:B (2.35) BS04 CA 3.6.4.- GO:0000287 ... P68135 19035596
    9854 2vz1:A (1.91) BS01 CA 1.1.3.9 GO:0005576 ... P0CS93 18771294
    9855 2vzp:A (1.05) BS01 CA 3.2.1.165 GO:0030246 ... Q56F26 19218457
    9856 2vzp:A (1.05) BS02 CA 3.2.1.165 GO:0030246 ... Q56F26 19218457
    9857 2vzp:B (1.05) BS01 CA 3.2.1.165 GO:0030246 ... Q56F26 19218457
    9858 2vzp:B (1.05) BS02 CA 3.2.1.165 GO:0030246 ... Q56F26 19218457
    9859 2vzq:A (1.7) BS02 CA 3.2.1.165 GO:0030246 ... Q56F26 19218457
    9860 2vzq:A (1.7) BS03 CA 3.2.1.165 GO:0030246 ... Q56F26 19218457
    9861 2vzq:B (1.7) BS02 CA 3.2.1.165 GO:0030246 ... Q56F26 19218457
    9862 2vzq:B (1.7) BS03 CA 3.2.1.165 GO:0030246 ... Q56F26 19218457
    9863 2vzr:A (1.95) BS01 CA 3.2.1.165 GO:0030246 ... Q56F26 19218457
    9864 2vzr:A (1.95) BS03 CA 3.2.1.165 GO:0030246 ... Q56F26 19218457
    9865 2vzr:B (1.95) BS01 CA 3.2.1.165 GO:0030246 ... Q56F26 19218457
    9866 2vzr:B (1.95) BS03 CA 3.2.1.165 GO:0030246 ... Q56F26 19218457
    9867 2w08:A (1.7) BS01 CA ? GO:0001849 ... P02743 19372378
    9868 2w08:A (1.7) BS02 CA ? GO:0001849 ... P02743 19372378
    9869 2w08:B (1.7) BS01 CA ? GO:0001849 ... P02743 19372378
    9870 2w08:B (1.7) BS02 CA ? GO:0001849 ... P02743 19372378
    9871 2w08:C (1.7) BS01 CA ? GO:0001849 ... P02743 19372378
    9872 2w08:C (1.7) BS02 CA ? GO:0001849 ... P02743 19372378
    9873 2w08:D (1.7) BS01 CA ? GO:0001849 ... P02743 19372378
    9874 2w08:D (1.7) BS02 CA ? GO:0001849 ... P02743 19372378
    9875 2w08:E (1.7) BS01 CA ? GO:0001849 ... P02743 19372378
    9876 2w08:E (1.7) BS02 CA ? GO:0001849 ... P02743 19372378
    9877 2w0c:A (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    9878 2w0c:B (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    9879 2w0c:C (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    9880 2w0c:D (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    9881 2w0c:E (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    9882 2w0c:F (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    9883 2w0c:G (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    9884 2w0c:H (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    9885 2w0c:I (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    9886 2w0c:J (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    9887 2w0c:L (7.0) BS01 CA ? GO:0044423 ... Q9XJR3 18775333
    9888 2w0d:A (2.0) BS03 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    9889 2w0d:A (2.0) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    9890 2w0d:A (2.0) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    9891 2w0d:B (2.0) BS03 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    9892 2w0d:B (2.0) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    9893 2w0d:B (2.0) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    9894 2w0d:C (2.0) BS03 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    9895 2w0d:C (2.0) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    9896 2w0d:C (2.0) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    9897 2w0d:D (2.0) BS03 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    9898 2w0d:D (2.0) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    9899 2w0d:D (2.0) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    9900 2w0q:A (2.48) BS02 CA 1.4.3.21 GO:0005507 ... P46883 19052360
    9901 2w0q:A (2.48) BS03 CA 1.4.3.21 GO:0005507 ... P46883 19052360
    9902 2w0q:B (2.48) BS03 CA 1.4.3.21 GO:0005507 ... P46883 19052360
    9903 2w0q:B (2.48) BS04 CA 1.4.3.21 GO:0005507 ... P46883 19052360
    9904 2w1q:A (1.6) BS01 CA 3.2.1.35 N/A P26831 19422833
    9905 2w1q:B (1.6) BS01 CA 3.2.1.35 N/A P26831 19422833
    9906 2w1s:A (1.45) BS01 CA 3.2.1.35 N/A P26831 19422833
    9907 2w1s:B (1.45) BS01 CA 3.2.1.35 N/A P26831 19422833
    9908 2w1u:A (2.0) BS01 CA 3.2.1.35 N/A P26831 19422833
    9909 2w1u:B (2.0) BS01 CA 3.2.1.35 N/A P26831 19422833
    9910 2w1u:C (2.0) BS01 CA 3.2.1.35 N/A P26831 19422833
    9911 2w1u:D (2.0) BS01 CA 3.2.1.35 N/A P26831 19422833
    9912 2w1w:A (1.55) BS01 CA ? GO:0030246 ... A3DK57 19218457
    9913 2w1w:B (1.55) BS01 CA ? GO:0030246 ... A3DK57 19218457
    9914 2w1w:B (1.55) BS02 CA ? GO:0030246 ... A3DK57 19218457
    9915 2w22:A (2.2) BS01 CA 3.1.1.3 GO:0004806 ... Q59260 19056729
    9916 2w23:A (1.94) BS02 CA 1.11.1.16 GO:0000302 ... O94753 19158088
    9917 2w23:A (1.94) BS03 CA 1.11.1.16 GO:0000302 ... O94753 19158088
    9918 2w26:A (2.08) BS02 CA 3.4.21.6 GO:0004252 ... P00742 16161994
    9919 2w26:A (2.08) BS03 CA 3.4.21.6 GO:0004252 ... P00742 16161994
    9920 2w27:A (2.8) BS03 CA ? N/A O35014 19244251
    9921 2w27:B (2.8) BS03 CA ? N/A O35014 19244251
    9922 2w2m:A (2.4) BS01 CA 3.4.21.- GO:0004252 ... Q8NBP7 19001363
    9923 2w2m:E (2.4) BS01 CA ? GO:0005509 ... P01130 19001363
    9924 2w2n:A (2.3) BS01 CA 3.4.21.- GO:0004252 ... Q8NBP7 19001363
    9925 2w2n:E (2.3) BS01 CA ? GO:0005509 ... P01130 19001363
    9926 2w2o:E (2.62) BS01 CA ? GO:0005509 ... P01130 19001363
    9927 2w2p:E (2.62) BS01 CA ? GO:0005509 ... P01130 19001363
    9928 2w2q:A (2.33) BS01 CA 3.4.21.- GO:0004252 ... Q8NBP7 19001363
    9929 2w2q:E (2.33) BS01 CA ? GO:0005509 ... P01130 19001363
    9930 2w3i:A (1.9) BS01 CA 3.4.21.6 GO:0004252 ... P00742 19231206
    9931 2w3j:A (1.7) BS01 CA N/A GO:0030246 ... N/A 19218457
    9932 2w3j:A (1.7) BS02 CA N/A GO:0030246 ... N/A 19218457
    9933 2w3k:A (2.05) BS02 CA 3.4.21.6 GO:0004252 ... P00742 19231206
    9934 2w3o:A (1.85) BS02 CA 2.7.1.78
    3.1.3.32
    N/A Q96T60 19155274
    9935 2w3r:B (2.9) BS01 CA 1.1.1.204 GO:0005506 ... O54051 19109249
    9936 2w3r:D (2.9) BS01 CA 1.1.1.204 GO:0005506 ... O54051 19109249
    9937 2w3r:F (2.9) BS01 CA 1.1.1.204 GO:0005506 ... O54051 19109249
    9938 2w3r:H (2.9) BS01 CA 1.1.1.204 GO:0005506 ... O54051 19109249
    9939 2w3s:B (2.6) BS01 CA 1.1.1.204 GO:0005506 ... O54051 19109249
    9940 2w3s:D (2.6) BS01 CA 1.1.1.204 GO:0005506 ... O54051 19109249
    9941 2w3s:F (2.6) BS01 CA 1.1.1.204 GO:0005506 ... O54051 19109249
    9942 2w3s:H (2.6) BS01 CA 1.1.1.204 GO:0005506 ... O54051 19109249
    9943 2w46:A (1.9) BS01 CA 3.2.1.55 GO:0030246 ... Q51815 19218457
    9944 2w46:B (1.9) BS01 CA 3.2.1.55 GO:0030246 ... Q51815 19218457
    9945 2w47:A (1.4) BS02 CA ? GO:0030246 ... A3DK57 19218457
    9946 2w49:0 (35.0) BS01 CA ? GO:0003009 ... P02588 20844746
    9947 2w49:0 (35.0) BS02 CA ? GO:0003009 ... P02588 20844746
    9948 2w49:0 (35.0) BS03 CA ? GO:0003009 ... P02588 20844746
    9949 2w49:0 (35.0) BS04 CA ? GO:0003009 ... P02588 20844746
    9950 2w49:3 (35.0) BS01 CA ? GO:0003009 ... P02588 20844746
    9951 2w49:3 (35.0) BS02 CA ? GO:0003009 ... P02588 20844746
    9952 2w49:3 (35.0) BS03 CA ? GO:0003009 ... P02588 20844746
    9953 2w49:3 (35.0) BS04 CA ? GO:0003009 ... P02588 20844746
    9954 2w49:6 (35.0) BS01 CA ? GO:0003009 ... P02588 20844746
    9955 2w49:6 (35.0) BS02 CA ? GO:0003009 ... P02588 20844746
    9956 2w49:6 (35.0) BS03 CA ? GO:0003009 ... P02588 20844746
    9957 2w49:6 (35.0) BS04 CA ? GO:0003009 ... P02588 20844746
    9958 2w49:9 (35.0) BS01 CA ? GO:0003009 ... P02588 20844746
    9959 2w49:9 (35.0) BS02 CA ? GO:0003009 ... P02588 20844746
    9960 2w49:9 (35.0) BS03 CA ? GO:0003009 ... P02588 20844746
    9961 2w49:9 (35.0) BS04 CA ? GO:0003009 ... P02588 20844746
    9962 2w4x:A (2.42) BS02 CA 3.2.1.169 GO:0005975 ... Q89ZI2 19217614
    9963 2w4y:A (2.9) BS01 CA N/A N/A N/A 19559027
    9964 2w4y:A (2.9) BS02 CA N/A N/A N/A 19559027
    9965 2w4y:B (2.9) BS01 CA N/A N/A N/A 19559027
    9966 2w4y:B (2.9) BS02 CA N/A N/A N/A 19559027
    9967 2w4y:C (2.9) BS01 CA N/A N/A N/A 19559027
    9968 2w4y:C (2.9) BS04 CA N/A N/A N/A 19559027
    9969 2w4z:A (3.6) BS01 CA N/A N/A N/A 19559027
    9970 2w4z:A (3.6) BS03 CA N/A N/A N/A 19559027
    9971 2w4z:B (3.6) BS02 CA N/A N/A N/A 19559027
    9972 2w4z:B (3.6) BS04 CA N/A N/A N/A 19559027
    9973 2w4z:C (3.6) BS02 CA N/A N/A N/A 19559027
    9974 2w4z:C (3.6) BS03 CA N/A N/A N/A 19559027
    9975 2w66:A (2.27) BS02 CA 3.2.1.169 GO:0005975 ... Q89ZI2 19331390
    9976 2w66:B (2.27) BS02 CA 3.2.1.169 GO:0005975 ... Q89ZI2 19331390
    9977 2w67:A (2.25) BS02 CA 3.2.1.169 GO:0005975 ... Q89ZI2 19331390
    9978 2w67:B (2.25) BS02 CA 3.2.1.169 GO:0005975 ... Q89ZI2 19331390
    9979 2w73:A (1.45) BS03 CA ? GO:0000086 ... P0DP23 19404396
    9980 2w73:A (1.45) BS04 CA ? GO:0000086 ... P0DP23 19404396
    9981 2w73:A (1.45) BS05 CA ? GO:0000086 ... P0DP23 19404396
    9982 2w73:A (1.45) BS06 CA ? GO:0000086 ... P0DP23 19404396
    9983 2w73:B (1.45) BS03 CA ? GO:0000086 ... P0DP23 19404396
    9984 2w73:B (1.45) BS04 CA ? GO:0000086 ... P0DP23 19404396
    9985 2w73:B (1.45) BS05 CA ? GO:0000086 ... P0DP23 19404396
    9986 2w73:B (1.45) BS06 CA ? GO:0000086 ... P0DP23 19404396
    9987 2w73:E (1.45) BS03 CA ? GO:0000086 ... P0DP23 19404396
    9988 2w73:E (1.45) BS04 CA ? GO:0000086 ... P0DP23 19404396
    9989 2w73:E (1.45) BS05 CA ? GO:0000086 ... P0DP23 19404396
    9990 2w73:E (1.45) BS06 CA ? GO:0000086 ... P0DP23 19404396
    9991 2w73:F (1.45) BS03 CA ? GO:0000086 ... P0DP23 19404396
    9992 2w73:F (1.45) BS04 CA ? GO:0000086 ... P0DP23 19404396
    9993 2w73:F (1.45) BS05 CA ? GO:0000086 ... P0DP23 19404396
    9994 2w73:F (1.45) BS06 CA ? GO:0000086 ... P0DP23 19404396
    9995 2w73:F (1.45) BS07 CA ? GO:0000086 ... P0DP23 19404396
    9996 2w7o:A (3.16) BS04 CA 2.7.7.7 GO:0003684 ... Q9UBT6 19542228
    9997 2w7o:A (3.16) BS05 CA 2.7.7.7 GO:0003684 ... Q9UBT6 19542228
    9998 2w7o:B (3.16) BS04 CA 2.7.7.7 GO:0003684 ... Q9UBT6 19542228
    9999 2w7o:B (3.16) BS05 CA 2.7.7.7 GO:0003684 ... Q9UBT6 19542228
    10000 2w7p:A (3.71) BS04 CA 2.7.7.7 GO:0003684 ... Q9UBT6 19542228

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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