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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 1cru:B (1.5) BS01 CA 1.1.5.2 GO:0008876 ... P13650 10518528
    802 1cru:B (1.5) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10518528
    803 1cru:B (1.5) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10518528
    804 1cse:E (1.2) BS01 CA 3.4.21.62 GO:0004252 ... B0FXJ2 3301348
    805 1cse:E (1.2) BS02 CA 3.4.21.62 GO:0004252 ... B0FXJ2 3301348
    806 1cta:A (-1.00) BS01 CA ? N/A P02588 1390738
    807 1cta:B (-1.00) BS01 CA ? N/A P02588 1390738
    808 1ctd:A (-1.00) BS01 CA ? N/A P02588 1390738
    809 1ctd:B (-1.00) BS01 CA ? N/A P02588 1390738
    810 1ctr:A (2.45) BS01 CA ? GO:0000086 ... P0DP23 7803388
    811 1ctr:A (2.45) BS02 CA ? GO:0000086 ... P0DP23 7803388
    812 1ctr:A (2.45) BS03 CA ? GO:0000086 ... P0DP23 7803388
    813 1ctr:A (2.45) BS04 CA ? GO:0000086 ... P0DP23 7803388
    814 1cvl:A (1.6) BS01 CA 3.1.1.3 GO:0003824 ... P0DUB9 8683577
    815 1cvm:A (2.4) BS01 CA 3.1.3.8 GO:0005576 ... O66037 10655618
    816 1cvm:A (2.4) BS02 CA 3.1.3.8 GO:0005576 ... O66037 10655618
    817 1cvm:A (2.4) BS03 CA 3.1.3.8 GO:0005576 ... O66037 10655618
    818 1cvn:A (2.3) BS04 CA ? GO:0030246 ... P02866 8557713
    819 1cvn:B (2.3) BS05 CA ? GO:0030246 ... P02866 8557713
    820 1cvn:C (2.3) BS05 CA ? GO:0030246 ... P02866 8557713
    821 1cvn:D (2.3) BS04 CA ? GO:0030246 ... P02866 8557713
    822 1cvr:A (2.0) BS02 CA 3.4.22.37 GO:0006508 ... P95493 10523290
    823 1cvr:A (2.0) BS03 CA 3.4.22.37 GO:0006508 ... P95493 10523290
    824 1cvr:A (2.0) BS04 CA 3.4.22.37 GO:0006508 ... P95493 10523290
    825 1cvr:A (2.0) BS05 CA 3.4.22.37 GO:0006508 ... P95493 10523290
    826 1cvw:H (2.28) BS02 CA 3.4.21.21 GO:0004252 ... P08709 10544046
    827 1cxe:A (2.1) BS10 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    828 1cxe:A (2.1) BS11 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    829 1cxf:A (2.1) BS10 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    830 1cxf:A (2.1) BS11 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    831 1cxh:A (2.41) BS11 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    832 1cxh:A (2.41) BS12 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    833 1cxi:A (2.2) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    834 1cxi:A (2.2) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    835 1cxk:A (2.09) BS14 CA 2.4.1.19 GO:0003824 ... P43379 10331869
    836 1cxk:A (2.09) BS15 CA 2.4.1.19 GO:0003824 ... P43379 10331869
    837 1cxl:A (1.81) BS10 CA 2.4.1.19 GO:0003824 ... P43379 10331869
    838 1cxl:A (1.81) BS11 CA 2.4.1.19 GO:0003824 ... P43379 10331869
    839 1cxp:C (1.8) BS04 CA 1.11.2.2 GO:0004601 ... P05164 10766826
    840 1cxp:D (1.8) BS05 CA 1.11.2.2 GO:0004601 ... P05164 10766826
    841 1cxv:A (2.0) BS03 CA 3.4.24.- GO:0004222 ... P33435 10525409
    842 1cxv:A (2.0) BS04 CA 3.4.24.- GO:0004222 ... P33435 10525409
    843 1cxv:B (2.0) BS03 CA 3.4.24.- GO:0004222 ... P33435 10525409
    844 1cxv:B (2.0) BS04 CA 3.4.24.- GO:0004222 ... P33435 10525409
    845 1cyg:A (2.5) BS01 CA 2.4.1.19 GO:0003824 ... P31797 N/A
    846 1cyg:A (2.5) BS02 CA 2.4.1.19 GO:0003824 ... P31797 N/A
    847 1d0b:A (1.86) BS01 CA ? N/A P0DQD2 10635330
    848 1d0b:A (1.86) BS02 CA ? N/A P0DQD2 10635330
    849 1d0k:A (2.02) BS03 CA 4.2.2.n1 GO:0005509 ... P41052 10684641
    850 1d0l:A (1.97) BS01 CA 4.2.2.n1 GO:0005509 ... P41052 10684641
    851 1d0m:A (2.47) BS01 CA 4.2.2.n1 GO:0005509 ... P41052 10684641
    852 1d2j:A (-1.00) BS01 CA ? N/A P01130 10704205
    853 1d2l:A (-1.00) BS01 CA ? N/A Q07954 10652313
    854 1d2s:A (1.55) BS01 CA ? N/A P04278 10675319
    855 1d2v:C (1.75) BS02 CA 1.11.2.2 GO:0004601 ... P05164 10766826
    856 1d2v:D (1.75) BS03 CA 1.11.2.2 GO:0004601 ... P05164 10766826
    857 1d3c:A (1.78) BS12 CA 2.4.1.19 GO:0003824 ... P43379 10574960
    858 1d3c:A (1.78) BS13 CA 2.4.1.19 GO:0003824 ... P43379 10574960
    859 1d3c:A (1.78) BS14 CA 2.4.1.19 GO:0003824 ... P43379 10574960
    860 1d4x:G (1.75) BS01 CA ? GO:0051015 ... P06396 12732734
    861 1d5j:A (2.6) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10579818
    862 1d5j:A (2.6) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10579818
    863 1d5j:A (2.6) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10579818
    864 1d5j:B (2.6) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10579818
    865 1d5j:B (2.6) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10579818
    866 1d5j:B (2.6) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10579818
    867 1d5l:C (1.9) BS04 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    868 1d5l:D (1.9) BS04 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    869 1d6u:A (2.4) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    870 1d6u:A (2.4) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    871 1d6u:B (2.4) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    872 1d6u:B (2.4) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    873 1d6y:A (2.4) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    874 1d6y:A (2.4) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    875 1d6y:B (2.4) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    876 1d6y:B (2.4) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    877 1d6z:A (2.1) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    878 1d6z:A (2.1) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    879 1d6z:B (2.1) BS02 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    880 1d6z:B (2.1) BS03 CA 1.4.3.21 GO:0005507 ... P46883 10576737
    881 1d7f:A (1.9) BS01 CA 2.4.1.19 GO:0003824 ... P05618 10679895
    882 1d7f:A (1.9) BS02 CA 2.4.1.19 GO:0003824 ... P05618 10679895
    883 1d7f:B (1.9) BS01 CA 2.4.1.19 GO:0003824 ... P05618 10679895
    884 1d7f:B (1.9) BS02 CA 2.4.1.19 GO:0003824 ... P05618 10679895
    885 1d7w:C (1.9) BS04 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    886 1d7w:D (1.9) BS04 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    887 1d7x:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10639284
    888 1d7x:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10639284
    889 1d7x:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10639284
    890 1d7x:B (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10639284
    891 1d7x:B (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10639284
    892 1d7x:B (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10639284
    893 1d8f:A (2.4) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    894 1d8f:A (2.4) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    895 1d8f:A (2.4) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    896 1d8f:B (2.4) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    897 1d8f:B (2.4) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    898 1d8f:B (2.4) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10669564
    899 1d8m:A (2.44) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    900 1d8m:A (2.44) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    901 1d8m:A (2.44) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    902 1d8m:B (2.44) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    903 1d8m:B (2.44) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    904 1d8m:B (2.44) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    905 1dan:H (2.0) BS02 CA 3.4.21.21 GO:0004252 ... P08709 8598903
    906 1dan:L (2.0) BS02 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    907 1dan:L (2.0) BS03 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    908 1dan:L (2.0) BS04 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    909 1dan:L (2.0) BS05 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    910 1dan:L (2.0) BS06 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    911 1dan:L (2.0) BS07 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    912 1dan:L (2.0) BS08 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    913 1daq:A (-1.00) BS01 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    914 1daq:A (-1.00) BS02 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    915 1dav:A (-1.00) BS01 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    916 1dav:A (-1.00) BS02 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    917 1db4:A (2.2) BS01 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    918 1db4:A (2.2) BS02 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    919 1db5:A (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    920 1db5:A (2.8) BS02 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    921 1dbi:A (1.8) BS01 CA 3.4.21.- GO:0004252 ... Q45670 10588904
    922 1dbi:A (1.8) BS02 CA 3.4.21.- GO:0004252 ... Q45670 10588904
    923 1dbi:A (1.8) BS03 CA 3.4.21.- GO:0004252 ... Q45670 10588904
    924 1dbn:A (2.75) BS04 CA ? GO:0030246 ... P93248 10747930
    925 1dbn:B (2.75) BS04 CA ? GO:0030246 ... P93248 10747930
    926 1dcy:A (2.7) BS01 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    927 1dcy:A (2.7) BS02 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    928 1de4:C (2.8) BS01 CA ? GO:0004998 ... P02786 10638746
    929 1de4:F (2.8) BS01 CA ? GO:0004998 ... P02786 10638746
    930 1de4:I (2.8) BS01 CA ? GO:0004998 ... P02786 10638746
    931 1ded:A (2.0) BS05 CA 2.4.1.19 GO:0003824 ... P05618 10731709
    932 1ded:A (2.0) BS06 CA 2.4.1.19 GO:0003824 ... P05618 10731709
    933 1ded:B (2.0) BS03 CA 2.4.1.19 GO:0003824 ... P05618 10731709
    934 1ded:B (2.0) BS04 CA 2.4.1.19 GO:0003824 ... P05618 10731709
    935 1dej:S (2.4) BS01 CA ? GO:0051015 ... P06396 10669610
    936 1dej:S (2.4) BS02 CA ? GO:0051015 ... P06396 10669610
    937 1dfk:Z (4.2) BS01 CA ? GO:0005509 ... P07291 11016966
    938 1dfl:X (4.2) BS01 CA ? GO:0005509 ... P07291 11016966
    939 1dfl:Z (4.2) BS01 CA ? GO:0005509 ... P07291 11016966
    940 1dfm:A (1.5) BS03 CA 3.1.21.4 GO:0000287 ... Q45488 10655616
    941 1dfm:B (1.5) BS03 CA 3.1.21.4 GO:0000287 ... Q45488 10655616
    942 1dfx:A (1.9) BS03 CA 1.15.1.2 GO:0005506 ... P22076 N/A
    943 1dgl:A (2.4) BS03 CA ? GO:0005537 ... P08902 9830028
    944 1dgl:B (2.4) BS04 CA ? GO:0005537 ... P08902 9830028
    945 1dhk:A (1.85) BS01 CA 3.2.1.1 GO:0003824 ... P00690 8994970
    946 1dhk:B (1.85) BS01 CA ? GO:0015066 ... P02873 8994970
    947 1dhk:B (1.85) BS02 CA ? GO:0015066 ... P02873 8994970
    948 1dji:A (2.5) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    949 1dji:A (2.5) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    950 1dji:A (2.5) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    951 1dji:B (2.5) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    952 1dji:B (2.5) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    953 1dji:B (2.5) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    954 1djw:A (2.45) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    955 1djw:A (2.45) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    956 1djw:A (2.45) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    957 1djw:B (2.45) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    958 1djw:B (2.45) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    959 1djw:B (2.45) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    960 1djx:A (2.3) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    961 1djx:A (2.3) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    962 1djx:B (2.3) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    963 1djx:B (2.3) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    964 1djy:A (2.8) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    965 1djy:A (2.8) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    966 1djy:A (2.8) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    967 1djy:B (2.8) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    968 1djy:B (2.8) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    969 1djy:B (2.8) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    970 1djz:A (2.95) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    971 1djz:A (2.95) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    972 1djz:B (2.95) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    973 1djz:B (2.95) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    974 1dm5:A (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    975 1dm5:A (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    976 1dm5:B (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    977 1dm5:B (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    978 1dm5:C (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    979 1dm5:C (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    980 1dm5:D (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    981 1dm5:D (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    982 1dm5:E (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    983 1dm5:E (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    984 1dm5:F (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    985 1dmu:A (2.2) BS02 CA 3.1.21.4 GO:0004519 ... O68557 9736624
    986 1dmu:A (2.2) BS03 CA 3.1.21.4 GO:0004519 ... O68557 9736624
    987 1dnu:C (1.85) BS04 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    988 1dnu:D (1.85) BS05 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    989 1dnw:C (1.9) BS04 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    990 1dnw:D (1.9) BS05 CA 1.11.2.2 GO:0004601 ... P05164 11705390
    991 1dpo:A (1.59) BS01 CA 3.4.21.4 GO:0004252 ... P00763 1881877
    992 1dq1:A (2.15) BS01 CA ? GO:0005537 ... P55915 10748006
    993 1dq1:A (2.15) BS02 CA ? GO:0005537 ... P55915 10748006
    994 1dsy:A (2.6) BS01 CA 2.7.11.13 N/A P05696 10562545
    995 1dsy:A (2.6) BS02 CA 2.7.11.13 N/A P05696 10562545
    996 1dt7:A (-1.00) BS02 CA ? GO:0001726 ... P04631 10876243
    997 1dt7:A (-1.00) BS03 CA ? GO:0001726 ... P04631 10876243
    998 1dt7:B (-1.00) BS02 CA ? GO:0001726 ... P04631 10876243
    999 1dt7:B (-1.00) BS03 CA ? GO:0001726 ... P04631 10876243
    1000 1dth:A (2.0) BS02 CA 3.4.24.42 GO:0004222 ... P15167 8610113

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218