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BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9601 2v4r:A (2.5) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 19492857
    9602 2v53:A (3.2) BS01 CA ? GO:0005509 ... P09486 19011090
    9603 2v5c:A (2.1) BS01 CA 3.2.1.169 N/A Q0TR53 19193644
    9604 2v5c:A (2.1) BS02 CA 3.2.1.169 N/A Q0TR53 19193644
    9605 2v5c:B (2.1) BS01 CA 3.2.1.169 N/A Q0TR53 19193644
    9606 2v5c:B (2.1) BS02 CA 3.2.1.169 N/A Q0TR53 19193644
    9607 2v5d:A (3.3) BS01 CA 3.2.1.169 N/A Q0TR53 19193644
    9608 2v5d:A (3.3) BS02 CA 3.2.1.169 N/A Q0TR53 19193644
    9609 2v5d:A (3.3) BS03 CA 3.2.1.169 N/A Q0TR53 19193644
    9610 2v72:A (2.25) BS01 CA 3.2.1.18 N/A Q8XMY5 17850114
    9611 2v73:A (2.2) BS01 CA 3.2.1.18 GO:0004308 ... A0A0H2YT71 17850114
    9612 2v73:A (2.2) BS02 CA 3.2.1.18 GO:0004308 ... A0A0H2YT71 17850114
    9613 2v8b:A (0.94) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    9614 2v9m:A (1.3) BS02 CA 4.1.2.19 GO:0005737 ... P32169 18187656
    9615 2v9w:A (3.0) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    9616 2v9w:A (3.0) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    9617 2v9w:B (3.0) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    9618 2v9w:B (3.0) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    9619 2va2:A (2.8) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    9620 2va2:A (2.8) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    9621 2va2:B (2.8) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    9622 2va2:B (2.8) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    9623 2va3:A (2.98) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    9624 2va3:A (2.98) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17951245
    9625 2vas:B (2.4) BS01 CA ? GO:0005509 ... P62152 18046460
    9626 2vas:B (2.4) BS02 CA ? GO:0005509 ... P62152 18046460
    9627 2vas:B (2.4) BS03 CA ? GO:0005509 ... P62152 18046460
    9628 2vas:B (2.4) BS04 CA ? GO:0005509 ... P62152 18046460
    9629 2vay:A (1.94) BS02 CA ? GO:0000086 ... P0DP23 19473981
    9630 2vay:A (1.94) BS03 CA ? GO:0000086 ... P0DP23 19473981
    9631 2vay:A (1.94) BS04 CA ? GO:0000086 ... P0DP23 19473981
    9632 2vay:A (1.94) BS05 CA ? GO:0000086 ... P0DP23 19473981
    9633 2vb6:B (2.3) BS01 CA ? GO:0005509 ... P62149 18046460
    9634 2vb6:B (2.3) BS02 CA ? GO:0005509 ... P62149 18046460
    9635 2vb6:B (2.3) BS03 CA ? GO:0005509 ... P62149 18046460
    9636 2vb6:B (2.3) BS04 CA ? GO:0005509 ... P62149 18046460
    9637 2vbn:A (1.9) BS04 CA 3.1.-.- GO:0004519 ... P05725 18987743
    9638 2vbn:B (1.9) BS04 CA 3.1.-.- GO:0004519 ... P05725 18987743
    9639 2vbo:A (1.8) BS03 CA 3.1.-.- GO:0004519 ... P05725 18987743
    9640 2vbo:B (1.8) BS03 CA 3.1.-.- GO:0004519 ... P05725 18987743
    9641 2vc2:A (3.1) BS01 CA ? GO:0007155 ... P08514 18710925
    9642 2vc2:A (3.1) BS02 CA ? GO:0007155 ... P08514 18710925
    9643 2vc2:A (3.1) BS03 CA ? GO:0007155 ... P08514 18710925
    9644 2vc2:A (3.1) BS04 CA ? GO:0007155 ... P08514 18710925
    9645 2vc2:B (3.1) BS03 CA ? N/A P05106 18710925
    9646 2vc2:B (3.1) BS04 CA ? N/A P05106 18710925
    9647 2vc9:A (2.36) BS02 CA 3.2.1.50 N/A A0A0H2YU91 18443291
    9648 2vca:A (2.05) BS01 CA 3.2.1.50 N/A A0A0H2YU91 18443291
    9649 2vcb:A (2.2) BS02 CA 3.2.1.50 N/A A0A0H2YU91 18443291
    9650 2vcc:A (2.0) BS01 CA 3.2.1.50 N/A A0A0H2YU91 18443291
    9651 2vdk:A (2.8) BS01 CA ? GO:0007155 ... P08514 18710925
    9652 2vdk:A (2.8) BS02 CA ? GO:0007155 ... P08514 18710925
    9653 2vdk:A (2.8) BS03 CA ? GO:0007155 ... P08514 18710925
    9654 2vdk:A (2.8) BS04 CA ? GO:0007155 ... P08514 18710925
    9655 2vdk:B (2.8) BS02 CA ? N/A P05106 18710925
    9656 2vdk:B (2.8) BS03 CA ? N/A P05106 18710925
    9657 2vdl:A (2.75) BS01 CA ? GO:0007155 ... P08514 18710925
    9658 2vdl:A (2.75) BS02 CA ? GO:0007155 ... P08514 18710925
    9659 2vdl:A (2.75) BS03 CA ? GO:0007155 ... P08514 18710925
    9660 2vdl:A (2.75) BS04 CA ? GO:0007155 ... P08514 18710925
    9661 2vdl:B (2.75) BS02 CA ? N/A P05106 18710925
    9662 2vdl:B (2.75) BS03 CA ? N/A P05106 18710925
    9663 2vdm:A (2.9) BS01 CA ? GO:0007155 ... P08514 18710925
    9664 2vdm:A (2.9) BS02 CA ? GO:0007155 ... P08514 18710925
    9665 2vdm:A (2.9) BS03 CA ? GO:0007155 ... P08514 18710925
    9666 2vdm:A (2.9) BS04 CA ? GO:0007155 ... P08514 18710925
    9667 2vdm:B (2.9) BS03 CA ? N/A P05106 18710925
    9668 2vdm:B (2.9) BS04 CA ? N/A P05106 18710925
    9669 2vdn:A (2.9) BS02 CA ? GO:0007155 ... P08514 18710925
    9670 2vdn:A (2.9) BS03 CA ? GO:0007155 ... P08514 18710925
    9671 2vdn:A (2.9) BS04 CA ? GO:0007155 ... P08514 18710925
    9672 2vdn:A (2.9) BS05 CA ? GO:0007155 ... P08514 18710925
    9673 2vdn:B (2.9) BS03 CA ? N/A P05106 18710925
    9674 2vdn:B (2.9) BS04 CA ? N/A P05106 18710925
    9675 2vdo:A (2.51) BS02 CA ? GO:0007155 ... P08514 18710925
    9676 2vdo:A (2.51) BS03 CA ? GO:0007155 ... P08514 18710925
    9677 2vdo:A (2.51) BS04 CA ? GO:0007155 ... P08514 18710925
    9678 2vdo:A (2.51) BS05 CA ? GO:0007155 ... P08514 18710925
    9679 2vdo:B (2.51) BS03 CA ? N/A P05106 18710925
    9680 2vdo:B (2.51) BS04 CA ? N/A P05106 18710925
    9681 2vdp:A (2.8) BS02 CA ? GO:0007155 ... P08514 18710925
    9682 2vdp:A (2.8) BS03 CA ? GO:0007155 ... P08514 18710925
    9683 2vdp:A (2.8) BS04 CA ? GO:0007155 ... P08514 18710925
    9684 2vdp:A (2.8) BS05 CA ? GO:0007155 ... P08514 18710925
    9685 2vdp:B (2.8) BS03 CA ? N/A P05106 18710925
    9686 2vdp:B (2.8) BS04 CA ? N/A P05106 18710925
    9687 2vdq:A (2.59) BS02 CA ? GO:0007155 ... P08514 18710925
    9688 2vdq:A (2.59) BS03 CA ? GO:0007155 ... P08514 18710925
    9689 2vdq:A (2.59) BS04 CA ? GO:0007155 ... P08514 18710925
    9690 2vdq:A (2.59) BS05 CA ? GO:0007155 ... P08514 18710925
    9691 2vdq:B (2.59) BS03 CA ? N/A P05106 18710925
    9692 2vdq:B (2.59) BS04 CA ? N/A P05106 18710925
    9693 2vdr:A (2.4) BS02 CA ? GO:0007155 ... P08514 18710925
    9694 2vdr:A (2.4) BS03 CA ? GO:0007155 ... P08514 18710925
    9695 2vdr:A (2.4) BS04 CA ? GO:0007155 ... P08514 18710925
    9696 2vdr:A (2.4) BS05 CA ? GO:0007155 ... P08514 18710925
    9697 2vdr:B (2.4) BS03 CA ? N/A P05106 18710925
    9698 2vdr:B (2.4) BS04 CA ? N/A P05106 18710925
    9699 2vdt:A (3.2) BS01 CA 2.4.1.10 GO:0005576 ... P05655 18596022
    9700 2vh0:A (1.7) BS01 CA 3.4.21.6 GO:0004252 ... P00742 18053714
    9701 2vhd:A (2.3) BS03 CA 1.11.1.5 GO:0004130 ... P14532 18217775
    9702 2vhd:B (2.3) BS03 CA 1.11.1.5 GO:0004130 ... P14532 18217775
    9703 2vj3:A (2.6) BS01 CA ? GO:0005509 ... P46531 18660822
    9704 2vj3:A (2.6) BS02 CA ? GO:0005509 ... P46531 18660822
    9705 2vj3:A (2.6) BS03 CA ? GO:0005509 ... P46531 18660822
    9706 2vj3:A (2.6) BS04 CA ? GO:0005509 ... P46531 18660822
    9707 2vk5:A (0.97) BS01 CA 3.2.1.18 GO:0004308 ... Q59310 18218621
    9708 2vk5:A (0.97) BS02 CA 3.2.1.18 GO:0004308 ... Q59310 18218621
    9709 2vk6:A (1.5) BS01 CA 3.2.1.18 GO:0004308 ... Q59310 18218621
    9710 2vk7:A (1.2) BS01 CA 3.2.1.18 GO:0004308 ... Q59310 18218621
    9711 2vk7:A (1.2) BS03 CA 3.2.1.18 GO:0004308 ... Q59310 18218621
    9712 2vk7:B (1.2) BS01 CA 3.2.1.18 GO:0004308 ... Q59310 18218621
    9713 2vk7:B (1.2) BS03 CA 3.2.1.18 GO:0004308 ... Q59310 18218621
    9714 2vk7:B (1.2) BS04 CA 3.2.1.18 GO:0004308 ... Q59310 18218621
    9715 2vka:A (2.0) BS01 CA 1.11.1.16 GO:0000302 ... O94753 18201105
    9716 2vka:A (2.0) BS03 CA 1.11.1.16 GO:0000302 ... O94753 18201105
    9717 2vkh:A (2.3) BS01 CA 2.4.1.-
    3.4.22.-
    GO:0016757 ... Q46342 18325534
    9718 2vkh:B (2.3) BS01 CA 2.4.1.-
    3.4.22.-
    GO:0016757 ... Q46342 18325534
    9719 2vkh:C (2.3) BS01 CA 2.4.1.-
    3.4.22.-
    GO:0016757 ... Q46342 18325534
    9720 2vl8:A (2.31) BS03 CA 2.4.1.-
    3.4.22.-
    GO:0016757 ... Q46342 18505687
    9721 2vl8:B (2.31) BS03 CA 2.4.1.-
    3.4.22.-
    GO:0016757 ... Q46342 18505687
    9722 2vl8:C (2.31) BS03 CA 2.4.1.-
    3.4.22.-
    GO:0016757 ... Q46342 18505687
    9723 2vm9:A (1.75) BS01 CA ? GO:0005737 ... P42530 18384150
    9724 2vma:A (1.9) BS01 CA ? N/A P45780 19324092
    9725 2vma:B (1.9) BS01 CA ? N/A P45780 19324092
    9726 2vmb:A (1.95) BS01 CA ? N/A P45780 19324092
    9727 2vmb:B (1.95) BS01 CA ? N/A P45780 19324092
    9728 2vmc:A (1.9) BS01 CA ? GO:0005737 ... P42530 18384150
    9729 2vmd:A (1.9) BS01 CA ? GO:0005737 ... P42530 18384150
    9730 2vme:A (2.45) BS01 CA ? GO:0005737 ... P42530 18384150
    9731 2vme:B (2.45) BS01 CA ? GO:0005737 ... P42530 18384150
    9732 2vme:C (2.45) BS01 CA ? GO:0005737 ... P42530 18384150
    9733 2vme:D (2.45) BS01 CA ? GO:0005737 ... P42530 18384150
    9734 2vme:E (2.45) BS01 CA ? GO:0005737 ... P42530 18384150
    9735 2vme:F (2.45) BS01 CA ? GO:0005737 ... P42530 18384150
    9736 2vmg:A (1.9) BS01 CA ? N/A A0A0H2YQB3 18292090
    9737 2vmh:A (1.5) BS01 CA ? N/A A0A0H2YQB3 18292090
    9738 2vmi:A (1.7) BS01 CA ? N/A A0A0H2YQB3 18292090
    9739 2vn5:B (1.9) BS01 CA 3.2.1.4 GO:0000272 ... P17901 18445585
    9740 2vn5:B (1.9) BS02 CA 3.2.1.4 GO:0000272 ... P17901 18445585
    9741 2vn5:D (1.9) BS01 CA 3.2.1.4 GO:0000272 ... P17901 18445585
    9742 2vn5:D (1.9) BS02 CA 3.2.1.4 GO:0000272 ... P17901 18445585
    9743 2vn6:B (1.49) BS01 CA 3.2.1.4 GO:0000272 ... P17901 18445585
    9744 2vn6:B (1.49) BS02 CA 3.2.1.4 GO:0000272 ... P17901 18445585
    9745 2vn7:A (1.9) BS03 CA N/A GO:0000272 ... N/A 18457422
    9746 2vng:A (1.4) BS03 CA 3.2.1.- N/A Q8XNK4 18292090
    9747 2vng:B (1.4) BS03 CA 3.2.1.- N/A Q8XNK4 18292090
    9748 2vno:A (1.45) BS04 CA 3.2.1.- N/A Q8XNK4 18292090
    9749 2vno:B (1.45) BS03 CA 3.2.1.- N/A Q8XNK4 18292090
    9750 2vnr:A (1.55) BS01 CA 3.2.1.- N/A Q8XNK4 18292090
    9751 2vnv:A (1.7) BS02 CA ? GO:0046872 ... B4EH87 18215132
    9752 2vnv:A (1.7) BS03 CA ? GO:0046872 ... B4EH87 18215132
    9753 2vnv:B (1.7) BS02 CA ? GO:0046872 ... B4EH87 18215132
    9754 2vnv:B (1.7) BS03 CA ? GO:0046872 ... B4EH87 18215132
    9755 2vnv:C (1.7) BS02 CA ? GO:0046872 ... B4EH87 18215132
    9756 2vnv:C (1.7) BS03 CA ? GO:0046872 ... B4EH87 18215132
    9757 2vnv:D (1.7) BS02 CA ? GO:0046872 ... B4EH87 18215132
    9758 2vnv:D (1.7) BS03 CA ? GO:0046872 ... B4EH87 18215132
    9759 2vnv:E (1.7) BS02 CA ? GO:0046872 ... B4EH87 18215132
    9760 2vnv:E (1.7) BS03 CA ? GO:0046872 ... B4EH87 18215132
    9761 2vov:A (1.35) BS01 CA ? N/A G1UBC6 18348978
    9762 2vow:A (1.65) BS01 CA ? N/A G1UBC6 18348978
    9763 2vox:A (1.9) BS01 CA ? N/A G1UBC6 18348978
    9764 2vpt:A (1.4) BS01 CA 3.1.1.72 N/A A3DDK4 18436237
    9765 2vq0:A (3.6) BS01 CA ? GO:0005198 ... Q9EB06 18295296
    9766 2vq0:A (3.6) BS02 CA ? GO:0005198 ... Q9EB06 18295296
    9767 2vq0:B (3.6) BS01 CA ? GO:0005198 ... Q9EB06 18295296
    9768 2vq0:B (3.6) BS02 CA ? GO:0005198 ... Q9EB06 18295296
    9769 2vq0:C (3.6) BS01 CA ? GO:0005198 ... Q9EB06 18295296
    9770 2vq0:C (3.6) BS02 CA ? GO:0005198 ... Q9EB06 18295296
    9771 2vqr:A (1.42) BS02 CA 3.1.3.-
    3.1.4.-
    GO:0005737 ... Q1M964 18793651
    9772 2vqy:A (1.8) BS03 CA 2.3.1.82 GO:0016410 ... Q6SJ71 18710261
    9773 2vr0:A (2.8) BS06 CA 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    9774 2vr0:A (2.8) BS07 CA 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    9775 2vr0:B (2.8) BS07 CA 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    9776 2vr0:B (2.8) BS08 CA 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    9777 2vr0:D (2.8) BS07 CA 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    9778 2vr0:D (2.8) BS08 CA 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    9779 2vr0:E (2.8) BS07 CA 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    9780 2vr0:E (2.8) BS08 CA 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    9781 2vrg:A (-1.00) BS01 CA ? GO:0005509 ... Q8NI22 18590741
    9782 2vrg:A (-1.00) BS02 CA ? GO:0005509 ... Q8NI22 18590741
    9783 2vrj:A (1.9) BS02 CA 3.2.1.21 GO:0004553 ... Q08638 18833549
    9784 2vrj:B (1.9) BS02 CA 3.2.1.21 GO:0004553 ... Q08638 18833549
    9785 2vs7:A (2.05) BS04 CA 3.1.-.- GO:0004519 ... P21505 18974222
    9786 2vs7:D (2.05) BS04 CA 3.1.-.- GO:0004519 ... P21505 18974222
    9787 2vs7:G (2.05) BS04 CA 3.1.-.- GO:0004519 ... P21505 18974222
    9788 2vsf:A (2.9) BS02 CA 3.6.4.12 GO:0003676 ... Q9HM14 18578568
    9789 2vuc:A (1.3) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    9790 2vuc:A (1.3) BS03 CA ? GO:0030246 ... Q9HYN5 N/A
    9791 2vuc:B (1.3) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    9792 2vuc:B (1.3) BS03 CA ? GO:0030246 ... Q9HYN5 N/A
    9793 2vuc:C (1.3) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    9794 2vuc:C (1.3) BS03 CA ? GO:0030246 ... Q9HYN5 N/A
    9795 2vuc:D (1.3) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    9796 2vuc:D (1.3) BS03 CA ? GO:0030246 ... Q9HYN5 N/A
    9797 2vud:A (1.7) BS01 CA ? GO:0030246 ... Q9HYN5 N/A
    9798 2vud:A (1.7) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    9799 2vud:B (1.7) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    9800 2vud:B (1.7) BS03 CA ? GO:0030246 ... Q9HYN5 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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