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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9401 2rhp:A (2.9) BS23 CA ? GO:0005509 ... P35442 18499674
    9402 2rhp:A (2.9) BS24 CA ? GO:0005509 ... P35442 18499674
    9403 2rhp:A (2.9) BS25 CA ? GO:0005509 ... P35442 18499674
    9404 2rhp:A (2.9) BS26 CA ? GO:0005509 ... P35442 18499674
    9405 2rhp:A (2.9) BS27 CA ? GO:0005509 ... P35442 18499674
    9406 2rhp:A (2.9) BS28 CA ? GO:0005509 ... P35442 18499674
    9407 2rhp:A (2.9) BS29 CA ? GO:0005509 ... P35442 18499674
    9408 2rhp:A (2.9) BS30 CA ? GO:0005509 ... P35442 18499674
    9409 2ria:A (1.8) BS01 CA ? N/A P35247 18092821
    9410 2ria:A (1.8) BS02 CA ? N/A P35247 18092821
    9411 2ria:A (1.8) BS03 CA ? N/A P35247 18092821
    9412 2ria:B (1.8) BS01 CA ? N/A P35247 18092821
    9413 2ria:B (1.8) BS02 CA ? N/A P35247 18092821
    9414 2ria:B (1.8) BS03 CA ? N/A P35247 18092821
    9415 2ria:C (1.8) BS01 CA ? N/A P35247 18092821
    9416 2ria:C (1.8) BS02 CA ? N/A P35247 18092821
    9417 2ria:C (1.8) BS03 CA ? N/A P35247 18092821
    9418 2rib:A (1.8) BS01 CA ? N/A P35247 18092821
    9419 2rib:A (1.8) BS02 CA ? N/A P35247 18092821
    9420 2rib:A (1.8) BS03 CA ? N/A P35247 18092821
    9421 2rib:B (1.8) BS01 CA ? N/A P35247 18092821
    9422 2rib:B (1.8) BS02 CA ? N/A P35247 18092821
    9423 2rib:B (1.8) BS03 CA ? N/A P35247 18092821
    9424 2rib:C (1.8) BS01 CA ? N/A P35247 18092821
    9425 2rib:C (1.8) BS02 CA ? N/A P35247 18092821
    9426 2rib:C (1.8) BS03 CA ? N/A P35247 18092821
    9427 2ric:A (1.8) BS01 CA ? N/A P35247 18092821
    9428 2ric:A (1.8) BS02 CA ? N/A P35247 18092821
    9429 2ric:A (1.8) BS03 CA ? N/A P35247 18092821
    9430 2ric:B (1.8) BS02 CA ? N/A P35247 18092821
    9431 2ric:B (1.8) BS03 CA ? N/A P35247 18092821
    9432 2ric:B (1.8) BS04 CA ? N/A P35247 18092821
    9433 2ric:C (1.8) BS02 CA ? N/A P35247 18092821
    9434 2ric:C (1.8) BS03 CA ? N/A P35247 18092821
    9435 2ric:C (1.8) BS04 CA ? N/A P35247 18092821
    9436 2rid:A (1.8) BS01 CA ? N/A P35247 18092821
    9437 2rid:A (1.8) BS02 CA ? N/A P35247 18092821
    9438 2rid:A (1.8) BS03 CA ? N/A P35247 18092821
    9439 2rid:B (1.8) BS01 CA ? N/A P35247 18092821
    9440 2rid:B (1.8) BS02 CA ? N/A P35247 18092821
    9441 2rid:B (1.8) BS03 CA ? N/A P35247 18092821
    9442 2rid:C (1.8) BS01 CA ? N/A P35247 18092821
    9443 2rid:C (1.8) BS02 CA ? N/A P35247 18092821
    9444 2rid:C (1.8) BS03 CA ? N/A P35247 18092821
    9445 2rie:A (1.6) BS01 CA ? N/A P35247 18092821
    9446 2rie:A (1.6) BS02 CA ? N/A P35247 18092821
    9447 2rie:A (1.6) BS03 CA ? N/A P35247 18092821
    9448 2rie:B (1.6) BS01 CA ? N/A P35247 18092821
    9449 2rie:B (1.6) BS02 CA ? N/A P35247 18092821
    9450 2rie:B (1.6) BS03 CA ? N/A P35247 18092821
    9451 2rie:C (1.6) BS01 CA ? N/A P35247 18092821
    9452 2rie:C (1.6) BS02 CA ? N/A P35247 18092821
    9453 2rie:C (1.6) BS03 CA ? N/A P35247 18092821
    9454 2rji:A (1.8) BS01 CA ? N/A Q25842 18036613
    9455 2rjp:A (2.8) BS02 CA 3.4.24.82 GO:0004222 ... O75173 18042673
    9456 2rjp:A (2.8) BS03 CA 3.4.24.82 GO:0004222 ... O75173 18042673
    9457 2rjp:A (2.8) BS04 CA 3.4.24.82 GO:0004222 ... O75173 18042673
    9458 2rjp:B (2.8) BS02 CA 3.4.24.82 GO:0004222 ... O75173 18042673
    9459 2rjp:B (2.8) BS03 CA 3.4.24.82 GO:0004222 ... O75173 18042673
    9460 2rjp:B (2.8) BS04 CA 3.4.24.82 GO:0004222 ... O75173 18042673
    9461 2rjp:C (2.8) BS02 CA 3.4.24.82 GO:0004222 ... O75173 18042673
    9462 2rjp:C (2.8) BS03 CA 3.4.24.82 GO:0004222 ... O75173 18042673
    9463 2rjp:C (2.8) BS04 CA 3.4.24.82 GO:0004222 ... O75173 18042673
    9464 2rjp:D (2.8) BS02 CA 3.4.24.82 GO:0004222 ... O75173 18042673
    9465 2rjp:D (2.8) BS03 CA 3.4.24.82 GO:0004222 ... O75173 18042673
    9466 2rjp:D (2.8) BS04 CA 3.4.24.82 GO:0004222 ... O75173 18042673
    9467 2rjq:A (2.6) BS02 CA 3.4.24.- GO:0004222 ... Q9UNA0 18042673
    9468 2rjq:A (2.6) BS03 CA 3.4.24.- GO:0004222 ... Q9UNA0 18042673
    9469 2rld:A (1.7) BS01 CA ? GO:0046872 ... Q8AAW0 N/A
    9470 2rld:C (1.7) BS01 CA ? GO:0046872 ... Q8AAW0 N/A
    9471 2ro8:A (-1.00) BS01 CA ? GO:0005509 ... Q6LEG8 18347016
    9472 2ro8:A (-1.00) BS02 CA ? GO:0005509 ... Q6LEG8 18347016
    9473 2ro9:A (-1.00) BS01 CA ? GO:0005509 ... P62163 18347016
    9474 2ro9:A (-1.00) BS02 CA ? GO:0005509 ... P62163 18347016
    9475 2roa:A (-1.00) BS01 CA ? GO:0005509 ... Q39890 18347016
    9476 2roa:A (-1.00) BS02 CA ? GO:0005509 ... Q39890 18347016
    9477 2rob:A (-1.00) BS01 CA ? GO:0005509 ... Q39890 18347016
    9478 2rob:A (-1.00) BS02 CA ? GO:0005509 ... Q39890 18347016
    9479 2sas:A (2.4) BS01 CA ? GO:0005509 ... P04570 8429557
    9480 2sas:A (2.4) BS02 CA ? GO:0005509 ... P04570 8429557
    9481 2sas:A (2.4) BS03 CA ? GO:0005509 ... P04570 8429557
    9482 2sba:A (2.6) BS03 CA ? GO:0030246 ... P05046 7711015
    9483 2scp:A (2.0) BS01 CA ? GO:0005509 ... P04571 1560459
    9484 2scp:A (2.0) BS02 CA ? GO:0005509 ... P04571 1560459
    9485 2scp:A (2.0) BS03 CA ? GO:0005509 ... P04571 1560459
    9486 2scp:B (2.0) BS01 CA ? GO:0005509 ... P04571 1560459
    9487 2scp:B (2.0) BS02 CA ? GO:0005509 ... P04571 1560459
    9488 2scp:B (2.0) BS03 CA ? GO:0005509 ... P04571 1560459
    9489 2sec:E (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00780 3064813
    9490 2sec:E (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00780 3064813
    9491 2sec:E (1.8) BS03 CA 3.4.21.62 GO:0004252 ... P00780 3064813
    9492 2sic:E (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 1920411
    9493 2sic:E (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 1920411
    9494 2sni:E (2.1) BS01 CA 3.4.21.62 GO:0004252 ... P00782 3064813
    9495 2sni:E (2.1) BS02 CA 3.4.21.62 GO:0004252 ... P00782 3064813
    9496 2snm:A (1.97) BS01 CA 3.1.31.1 GO:0003676 ... P00644 1920420
    9497 2sns:A (1.5) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    9498 2st1:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 3286644
    9499 2st1:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 3286644
    9500 2sta:E (1.8) BS02 CA 3.4.21.4 GO:0004252 ... P35031 10089404
    9501 2stb:E (1.8) BS02 CA 3.4.21.4 GO:0004252 ... P35031 10089404
    9502 2taa:A (3.0) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 6609921
    9503 2taa:B (3.0) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 6609921
    9504 2taa:C (3.0) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 6609921
    9505 2tbs:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P35031 7846025
    9506 2tbv:A (2.9) BS01 CA ? GO:0005198 ... P11795 6481803
    9507 2tbv:A (2.9) BS02 CA ? GO:0005198 ... P11795 6481803
    9508 2tbv:A (2.9) BS03 CA ? GO:0005198 ... P11795 6481803
    9509 2tbv:B (2.9) BS01 CA ? GO:0005198 ... P11795 6481803
    9510 2tbv:B (2.9) BS02 CA ? GO:0005198 ... P11795 6481803
    9511 2tbv:B (2.9) BS03 CA ? GO:0005198 ... P11795 6481803
    9512 2tbv:C (2.9) BS01 CA ? GO:0005198 ... P11795 6481803
    9513 2tbv:C (2.9) BS02 CA ? GO:0005198 ... P11795 6481803
    9514 2tbv:C (2.9) BS03 CA ? GO:0005198 ... P11795 6481803
    9515 2tcl:A (2.2) BS03 CA 3.4.24.7 GO:0004222 ... P03956 7656013
    9516 2tcl:A (2.2) BS04 CA 3.4.24.7 GO:0004222 ... P03956 7656013
    9517 2tec:E (1.98) BS01 CA 3.4.21.66 GO:0004252 ... P04072 2689655
    9518 2tec:E (1.98) BS02 CA 3.4.21.66 GO:0004252 ... P04072 2689655
    9519 2tec:E (1.98) BS03 CA 3.4.21.66 GO:0004252 ... P04072 2689655
    9520 2tep:A (2.5) BS02 CA ? GO:0030246 ... P02872 N/A
    9521 2tep:B (2.5) BS02 CA ? GO:0030246 ... P02872 N/A
    9522 2tep:C (2.5) BS02 CA ? GO:0030246 ... P02872 N/A
    9523 2tep:D (2.5) BS02 CA ? GO:0030246 ... P02872 N/A
    9524 2tga:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    9525 2tgd:A (2.1) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    9526 2tgp:Z (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    9527 2tgt:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    9528 2tio:A (1.93) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9920392
    9529 2tli:A (1.95) BS02 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    9530 2tli:A (1.95) BS03 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    9531 2tli:A (1.95) BS04 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    9532 2tli:A (1.95) BS05 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    9533 2tlx:A (1.65) BS04 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    9534 2tlx:A (1.65) BS05 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    9535 2tlx:A (1.65) BS06 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    9536 2tlx:A (1.65) BS07 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    9537 2tmn:E (1.6) BS01 CA 3.4.24.27 GO:0004222 ... P00800 3709536
    9538 2tmn:E (1.6) BS02 CA 3.4.24.27 GO:0004222 ... P00800 3709536
    9539 2tmn:E (1.6) BS03 CA 3.4.24.27 GO:0004222 ... P00800 3709536
    9540 2tmn:E (1.6) BS04 CA 3.4.24.27 GO:0004222 ... P00800 3709536
    9541 2tn4:A (2.0) BS01 CA ? GO:0005509 ... P02586 9438870
    9542 2tn4:A (2.0) BS02 CA ? GO:0005509 ... P02586 9438870
    9543 2tn4:A (2.0) BS03 CA ? GO:0005509 ... P02586 9438870
    9544 2tn4:A (2.0) BS04 CA ? GO:0005509 ... P02586 9438870
    9545 2tn4:A (2.0) BS05 CA ? GO:0005509 ... P02586 9438870
    9546 2trm:A (2.8) BS01 CA 3.4.21.4 GO:0004252 ... P00763 3112942
    9547 2usn:A (2.2) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9792098
    9548 2usn:A (2.2) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9792098
    9549 2usn:A (2.2) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9792098
    9550 2uu8:A (0.94) BS01 CA ? GO:0030246 ... P02866 17642517
    9551 2uuf:B (1.26) BS03 CA 3.4.21.5 GO:0004252 ... P00734 17642517
    9552 2uuj:B (1.32) BS03 CA 3.4.21.5 GO:0004252 ... P00734 17642517
    9553 2uuk:B (1.39) BS03 CA 3.4.21.5 GO:0004252 ... P00734 17642517
    9554 2uuy:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 17391695
    9555 2uvp:B (1.7) BS01 CA ? GO:0005515 ... O25828 17683397
    9556 2uvp:C (1.7) BS01 CA ? GO:0005515 ... O25828 17683397
    9557 2uvr:A (2.9) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    9558 2uvr:A (2.9) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    9559 2uvr:A (2.9) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    9560 2uvu:A (2.7) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    9561 2uvu:A (2.7) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    9562 2uvu:A (2.7) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    9563 2uvv:A (2.2) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    9564 2uvv:A (2.2) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    9565 2uvv:A (2.2) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    9566 2uvw:A (2.09) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    9567 2uvw:A (2.09) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    9568 2uvw:A (2.09) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 17468100
    9569 2uwf:A (2.1) BS02 CA 3.2.1.8 GO:0004553 ... P07528 19567261
    9570 2uwf:A (2.1) BS03 CA 3.2.1.8 GO:0004553 ... P07528 19567261
    9571 2uwf:A (2.1) BS04 CA 3.2.1.8 GO:0004553 ... P07528 19567261
    9572 2uwf:A (2.1) BS05 CA 3.2.1.8 GO:0004553 ... P07528 19567261
    9573 2uwp:A (1.75) BS02 CA 3.4.21.6 GO:0004252 ... P00742 17420122
    9574 2ux1:K (1.8) BS01 CA 1.16.-.- GO:0005737 ... P0CB53 18552126
    9575 2uza:A (2.42) BS06 CA 1.2.7.1 GO:0003824 ... P94692 16472741
    9576 2uza:B (2.42) BS06 CA 1.2.7.1 GO:0003824 ... P94692 16472741
    9577 2uzp:A (2.0) BS03 CA 2.7.11.13 N/A P05129 N/A
    9578 2uzp:A (2.0) BS04 CA 2.7.11.13 N/A P05129 N/A
    9579 2uzp:A (2.0) BS05 CA 2.7.11.13 N/A P05129 N/A
    9580 2uzp:B (2.0) BS03 CA 2.7.11.13 N/A P05129 N/A
    9581 2uzp:B (2.0) BS04 CA 2.7.11.13 N/A P05129 N/A
    9582 2uzp:B (2.0) BS05 CA 2.7.11.13 N/A P05129 N/A
    9583 2uzp:C (2.0) BS03 CA 2.7.11.13 N/A P05129 N/A
    9584 2uzp:C (2.0) BS04 CA 2.7.11.13 N/A P05129 N/A
    9585 2uzp:C (2.0) BS05 CA 2.7.11.13 N/A P05129 N/A
    9586 2v01:A (2.15) BS07 CA ? GO:0000086 ... P0DP23 17671360
    9587 2v02:A (2.2) BS01 CA ? GO:0000086 ... P0DP23 17671360
    9588 2v02:A (2.2) BS03 CA ? GO:0000086 ... P0DP23 17671360
    9589 2v02:A (2.2) BS04 CA ? GO:0000086 ... P0DP23 17671360
    9590 2v0b:A (1.65) BS01 CA 3.4.21.36 GO:0004252 ... P00772 N/A
    9591 2v15:K (2.1) BS02 CA 1.16.-.- GO:0005737 ... P0CB53 18552126
    9592 2v3h:H (1.79) BS04 CA 3.4.21.5 GO:0004252 ... P00734 17901324
    9593 2v3o:H (1.79) BS04 CA 3.4.21.5 GO:0004252 ... P00734 17901324
    9594 2v3t:A (2.75) BS01 CA ? GO:0015276 ... Q63226 17715062
    9595 2v3t:B (2.75) BS01 CA ? GO:0015276 ... Q63226 17715062
    9596 2v3t:B (2.75) BS02 CA ? GO:0015276 ... Q63226 17715062
    9597 2v4q:A (2.6) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 19492857
    9598 2v4q:A (2.6) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 19492857
    9599 2v4q:A (2.6) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 19492857
    9600 2v4r:A (2.5) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 19492857

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218