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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9201 2qub:E (1.8) BS08 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9202 2qub:G (1.8) BS01 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9203 2qub:G (1.8) BS02 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9204 2qub:G (1.8) BS03 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9205 2qub:G (1.8) BS04 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9206 2qub:G (1.8) BS05 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9207 2qub:G (1.8) BS06 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9208 2qub:G (1.8) BS07 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9209 2qub:G (1.8) BS08 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9210 2qub:I (1.8) BS01 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9211 2qub:I (1.8) BS02 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9212 2qub:I (1.8) BS03 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9213 2qub:I (1.8) BS04 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9214 2qub:I (1.8) BS05 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9215 2qub:I (1.8) BS06 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9216 2qub:I (1.8) BS07 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9217 2qub:I (1.8) BS08 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9218 2qub:K (1.8) BS01 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9219 2qub:K (1.8) BS02 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9220 2qub:K (1.8) BS03 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9221 2qub:K (1.8) BS04 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9222 2qub:K (1.8) BS05 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9223 2qub:K (1.8) BS06 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9224 2qub:K (1.8) BS07 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9225 2qub:K (1.8) BS08 CA 3.1.1.3 GO:0004806 ... Q59933 17728256
    9226 2qv4:A (1.97) BS01 CA 3.2.1.1 GO:0003824 ... P04746 18284212
    9227 2qv6:A (2.0) BS01 CA 3.5.4.29 GO:0005525 ... Q57609 18052207
    9228 2qv6:B (2.0) BS01 CA 3.5.4.29 GO:0005525 ... Q57609 18052207
    9229 2qv6:C (2.0) BS03 CA 3.5.4.29 GO:0005525 ... Q57609 18052207
    9230 2qv6:D (2.0) BS04 CA 3.5.4.29 GO:0005525 ... Q57609 18052207
    9231 2qvf:B (2.4) BS01 CA ? GO:0005509 ... P09803 N/A
    9232 2qvf:B (2.4) BS02 CA ? GO:0005509 ... P09803 N/A
    9233 2qvf:B (2.4) BS03 CA ? GO:0005509 ... P09803 N/A
    9234 2qvf:B (2.4) BS04 CA ? GO:0005509 ... P09803 N/A
    9235 2qvi:A (3.012) BS01 CA ? GO:0005509 ... P15116 N/A
    9236 2qvi:A (3.012) BS02 CA ? GO:0005509 ... P15116 N/A
    9237 2qvi:A (3.012) BS03 CA ? GO:0005509 ... P15116 N/A
    9238 2qvm:A (1.703) BS01 CA ? GO:0007154 ... P23685 17962412
    9239 2qvm:A (1.703) BS02 CA ? GO:0007154 ... P23685 17962412
    9240 2qw1:A (1.7) BS02 CA ? GO:0005509 ... P0AEE5 19348466
    9241 2qwa:A (1.7) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9655825
    9242 2qwb:A (2.0) BS03 CA 3.2.1.18 GO:0004308 ... P03472 9655825
    9243 2qwc:A (1.6) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9655825
    9244 2qwd:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9655825
    9245 2qwe:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9655825
    9246 2qwf:A (1.9) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9655825
    9247 2qwg:A (1.8) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9655825
    9248 2qwh:A (1.8) BS02 CA 3.2.1.18 GO:0004308 ... P03472 9655825
    9249 2qwi:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9655825
    9250 2qwj:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9655825
    9251 2qwk:A (1.8) BS02 CA 3.2.1.18 GO:0004308 ... P03472 9655825
    9252 2qyi:A (2.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    9253 2qyi:C (2.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    9254 2r01:A (1.15) BS01 CA ? GO:0000166 ... Q8KFI1 N/A
    9255 2r16:A (1.04) BS01 CA ? N/A Q28146 18334217
    9256 2r1b:A (1.72) BS01 CA ? N/A Q63373 18334217
    9257 2r1b:B (1.72) BS01 CA ? N/A Q63373 18334217
    9258 2r1d:B (2.6) BS01 CA ? N/A Q63373 18334217
    9259 2r1d:D (2.6) BS01 CA ? N/A Q63373 18334217
    9260 2r1d:I (2.6) BS01 CA ? N/A Q63373 18334217
    9261 2r28:A (1.86) BS03 CA ? GO:0000086 ... P0DP23 18384083
    9262 2r28:A (1.86) BS04 CA ? GO:0000086 ... P0DP23 18384083
    9263 2r28:A (1.86) BS05 CA ? GO:0000086 ... P0DP23 18384083
    9264 2r28:A (1.86) BS06 CA ? GO:0000086 ... P0DP23 18384083
    9265 2r28:B (1.86) BS03 CA ? GO:0000086 ... P0DP23 18384083
    9266 2r28:B (1.86) BS04 CA ? GO:0000086 ... P0DP23 18384083
    9267 2r28:B (1.86) BS05 CA ? GO:0000086 ... P0DP23 18384083
    9268 2r28:B (1.86) BS06 CA ? GO:0000086 ... P0DP23 18384083
    9269 2r2i:A (2.0) BS01 CA ? GO:0001750 ... P79880 17997965
    9270 2r2i:A (2.0) BS02 CA ? GO:0001750 ... P79880 17997965
    9271 2r2i:A (2.0) BS03 CA ? GO:0001750 ... P79880 17997965
    9272 2r49:A (2.2) BS01 CA 3.2.1.73 GO:0004553 ... P17989 N/A
    9273 2r5l:A (2.4) BS01 CA 1.11.1.7 GO:0004601 ... A0A452E9Y6 18191143
    9274 2r5n:A (1.6) BS02 CA 2.2.1.1 GO:0000287 ... P27302 17914867
    9275 2r5n:B (1.6) BS03 CA 2.2.1.1 GO:0000287 ... P27302 17914867
    9276 2r7e:A (3.7) BS01 CA ? GO:0005507 ... P00451 17965321
    9277 2r7e:A (3.7) BS02 CA ? GO:0005507 ... P00451 17965321
    9278 2r7e:A (3.7) BS03 CA ? GO:0005507 ... P00451 17965321
    9279 2r8g:A (2.7) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 18563918
    9280 2r8g:A (2.7) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 18563918
    9281 2r8g:A (2.7) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 18563918
    9282 2r8h:A (2.48) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 18563918
    9283 2r8h:A (2.48) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 18563918
    9284 2r8h:A (2.48) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 18563918
    9285 2r8i:A (2.38) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 18563918
    9286 2r8i:A (2.38) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 18563918
    9287 2r8i:A (2.38) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 18563918
    9288 2r8j:A (3.1) BS03 CA 2.7.7.7 GO:0003684 ... Q04049 17991862
    9289 2r8j:A (3.1) BS04 CA 2.7.7.7 GO:0003684 ... Q04049 17991862
    9290 2r8j:B (3.1) BS03 CA 2.7.7.7 GO:0003684 ... Q04049 17991862
    9291 2r8j:B (3.1) BS04 CA 2.7.7.7 GO:0003684 ... Q04049 17991862
    9292 2r8k:A (3.3) BS03 CA 2.7.7.7 GO:0003684 ... Q04049 17991862
    9293 2r8k:A (3.3) BS04 CA 2.7.7.7 GO:0003684 ... Q04049 17991862
    9294 2r8k:B (3.3) BS03 CA 2.7.7.7 GO:0003684 ... Q04049 17991862
    9295 2r8k:B (3.3) BS04 CA 2.7.7.7 GO:0003684 ... Q04049 17991862
    9296 2r8o:A (1.47) BS01 CA 2.2.1.1 GO:0000287 ... P27302 17914867
    9297 2r8o:B (1.47) BS02 CA 2.2.1.1 GO:0000287 ... P27302 17914867
    9298 2r8p:A (1.65) BS01 CA 2.2.1.1 GO:0000287 ... P27302 17914867
    9299 2r8p:B (1.65) BS02 CA 2.2.1.1 GO:0000287 ... P27302 17914867
    9300 2r8y:A (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9301 2r8y:B (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9302 2r8y:C (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9303 2r8y:D (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9304 2r8y:E (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9305 2r8y:F (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9306 2r8y:G (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9307 2r8y:H (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9308 2r8y:I (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9309 2r8y:J (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9310 2r8y:K (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9311 2r8y:L (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9312 2r8y:M (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9313 2r8y:N (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9314 2r8y:O (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9315 2r8y:P (1.85) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9316 2r8z:A (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9317 2r8z:B (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9318 2r8z:C (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9319 2r8z:D (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9320 2r8z:E (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9321 2r8z:F (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9322 2r8z:G (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9323 2r8z:H (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9324 2r8z:I (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9325 2r8z:J (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9326 2r8z:K (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9327 2r8z:L (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9328 2r8z:M (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9329 2r8z:N (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9330 2r8z:O (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9331 2r8z:P (2.1) BS01 CA 3.1.3.45 GO:0009103 ... P67653 19726684
    9332 2r9c:A (1.8) BS01 CA 3.4.22.52 GO:0004198 ... P97571 18702462
    9333 2r9c:A (1.8) BS02 CA 3.4.22.52 GO:0004198 ... P97571 18702462
    9334 2r9f:A (1.6) BS01 CA 3.4.22.52 GO:0004198 ... P97571 18702462
    9335 2r9f:A (1.6) BS02 CA 3.4.22.52 GO:0004198 ... P97571 18702462
    9336 2ra3:A (1.46) BS01 CA 3.4.21.4 GO:0004252 ... P07477 18077447
    9337 2ra3:B (1.46) BS01 CA 3.4.21.4 GO:0004252 ... P07477 18077447
    9338 2ran:A (1.89) BS01 CA ? GO:0001786 ... P14668 8362244
    9339 2ran:A (1.89) BS02 CA ? GO:0001786 ... P14668 8362244
    9340 2ran:A (1.89) BS03 CA ? GO:0001786 ... P14668 8362244
    9341 2ran:A (1.89) BS04 CA ? GO:0001786 ... P14668 8362244
    9342 2ran:A (1.89) BS05 CA ? GO:0001786 ... P14668 8362244
    9343 2ran:A (1.89) BS06 CA ? GO:0001786 ... P14668 8362244
    9344 2ran:A (1.89) BS07 CA ? GO:0001786 ... P14668 8362244
    9345 2raq:A (3.11) BS01 CA ? GO:0046872 ... O26975 N/A
    9346 2raq:A (3.11) BS02 CA ? GO:0046872 ... O26975 N/A
    9347 2raq:B (3.11) BS01 CA ? GO:0046872 ... O26975 N/A
    9348 2raq:B (3.11) BS02 CA ? GO:0046872 ... O26975 N/A
    9349 2raq:E (3.11) BS01 CA ? GO:0046872 ... O26975 N/A
    9350 2raq:E (3.11) BS02 CA ? GO:0046872 ... O26975 N/A
    9351 2raq:F (3.11) BS01 CA ? GO:0046872 ... O26975 N/A
    9352 2rau:A (1.85) BS01 CA ? GO:0016020 ... Q97VU1 N/A
    9353 2rau:A (1.85) BS02 CA ? GO:0016020 ... Q97VU1 N/A
    9354 2rau:A (1.85) BS03 CA ? GO:0016020 ... Q97VU1 N/A
    9355 2rbm:A (1.9) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    9356 2rd4:A (2.97) BS01 CA 3.1.1.4 GO:0004623 ... P60043 N/A
    9357 2rd4:B (2.97) BS02 CA 3.1.1.4 GO:0004623 ... P60044 N/A
    9358 2rd4:B (2.97) BS03 CA 3.1.1.4 GO:0004623 ... P60044 N/A
    9359 2rdj:A (2.2) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 18448122
    9360 2rdj:A (2.2) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 18448122
    9361 2rdj:B (2.2) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 18448122
    9362 2rdj:B (2.2) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 18448122
    9363 2rdz:A (1.74) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    9364 2rdz:B (1.74) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    9365 2rdz:C (1.74) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    9366 2rdz:D (1.74) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    9367 2re1:A (2.75) BS01 CA 2.7.2.4 N/A Q9JYN6 N/A
    9368 2rex:B (2.3) BS02 CA ? GO:0003924 ... Q92730 N/A
    9369 2rex:D (2.3) BS02 CA ? GO:0003924 ... Q92730 N/A
    9370 2rf7:A (2.04) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    9371 2rf7:B (2.04) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    9372 2rf7:C (2.04) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    9373 2rf7:D (2.04) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    9374 2rga:A (1.9) BS01 CA 3.6.5.2 GO:0003924 ... P01112 18073111
    9375 2rgb:A (1.35) BS01 CA 3.6.5.2 GO:0003924 ... P01112 18073111
    9376 2rgc:A (1.6) BS02 CA 3.6.5.2 GO:0003924 ... P01112 18073111
    9377 2rgd:A (2.0) BS01 CA 3.6.5.2 GO:0003924 ... P01112 18073111
    9378 2rge:A (1.4) BS01 CA 3.6.5.2 GO:0003924 ... P01112 18073111
    9379 2rhp:A (2.9) BS01 CA ? GO:0005509 ... P35442 18499674
    9380 2rhp:A (2.9) BS02 CA ? GO:0005509 ... P35442 18499674
    9381 2rhp:A (2.9) BS03 CA ? GO:0005509 ... P35442 18499674
    9382 2rhp:A (2.9) BS04 CA ? GO:0005509 ... P35442 18499674
    9383 2rhp:A (2.9) BS05 CA ? GO:0005509 ... P35442 18499674
    9384 2rhp:A (2.9) BS06 CA ? GO:0005509 ... P35442 18499674
    9385 2rhp:A (2.9) BS07 CA ? GO:0005509 ... P35442 18499674
    9386 2rhp:A (2.9) BS08 CA ? GO:0005509 ... P35442 18499674
    9387 2rhp:A (2.9) BS09 CA ? GO:0005509 ... P35442 18499674
    9388 2rhp:A (2.9) BS10 CA ? GO:0005509 ... P35442 18499674
    9389 2rhp:A (2.9) BS11 CA ? GO:0005509 ... P35442 18499674
    9390 2rhp:A (2.9) BS12 CA ? GO:0005509 ... P35442 18499674
    9391 2rhp:A (2.9) BS13 CA ? GO:0005509 ... P35442 18499674
    9392 2rhp:A (2.9) BS14 CA ? GO:0005509 ... P35442 18499674
    9393 2rhp:A (2.9) BS15 CA ? GO:0005509 ... P35442 18499674
    9394 2rhp:A (2.9) BS16 CA ? GO:0005509 ... P35442 18499674
    9395 2rhp:A (2.9) BS17 CA ? GO:0005509 ... P35442 18499674
    9396 2rhp:A (2.9) BS18 CA ? GO:0005509 ... P35442 18499674
    9397 2rhp:A (2.9) BS19 CA ? GO:0005509 ... P35442 18499674
    9398 2rhp:A (2.9) BS20 CA ? GO:0005509 ... P35442 18499674
    9399 2rhp:A (2.9) BS21 CA ? GO:0005509 ... P35442 18499674
    9400 2rhp:A (2.9) BS22 CA ? GO:0005509 ... P35442 18499674
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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