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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8801 2ow9:B (1.74) BS04 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8802 2ow9:B (1.74) BS05 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8803 2owl:A (2.4) BS01 CA ? GO:0000018 ... P36767 17308310
    8804 2owl:B (2.4) BS01 CA ? GO:0000018 ... P36767 17308310
    8805 2ox8:C (2.5) BS02 CA ? N/A Q5KU26 17420244
    8806 2ox8:C (2.5) BS03 CA ? N/A Q5KU26 17420244
    8807 2ox8:C (2.5) BS04 CA ? N/A Q5KU26 17420244
    8808 2ox8:D (2.5) BS02 CA ? N/A Q5KU26 17420244
    8809 2ox8:D (2.5) BS03 CA ? N/A Q5KU26 17420244
    8810 2ox8:D (2.5) BS04 CA ? N/A Q5KU26 17420244
    8811 2ox9:A (1.95) BS03 CA ? N/A Q8K4Q8 17420244
    8812 2ox9:A (1.95) BS04 CA ? N/A Q8K4Q8 17420244
    8813 2ox9:A (1.95) BS05 CA ? N/A Q8K4Q8 17420244
    8814 2ox9:A (1.95) BS06 CA ? N/A Q8K4Q8 17420244
    8815 2ox9:B (1.95) BS02 CA ? N/A Q8K4Q8 17420244
    8816 2ox9:B (1.95) BS03 CA ? N/A Q8K4Q8 17420244
    8817 2ox9:B (1.95) BS04 CA ? N/A Q8K4Q8 17420244
    8818 2ox9:B (1.95) BS05 CA ? N/A Q8K4Q8 17420244
    8819 2ox9:C (1.95) BS02 CA ? N/A Q8K4Q8 17420244
    8820 2ox9:C (1.95) BS03 CA ? N/A Q8K4Q8 17420244
    8821 2ox9:C (1.95) BS04 CA ? N/A Q8K4Q8 17420244
    8822 2ox9:C (1.95) BS05 CA ? N/A Q8K4Q8 17420244
    8823 2ox9:D (1.95) BS02 CA ? N/A Q8K4Q8 17420244
    8824 2ox9:D (1.95) BS03 CA ? N/A Q8K4Q8 17420244
    8825 2ox9:D (1.95) BS04 CA ? N/A Q8K4Q8 17420244
    8826 2ox9:D (1.95) BS05 CA ? N/A Q8K4Q8 17420244
    8827 2oxe:A (2.8) BS01 CA 3.1.1.26
    3.1.1.3
    GO:0004620 ... P54317 18702514
    8828 2oxe:B (2.8) BS02 CA 3.1.1.26
    3.1.1.3
    GO:0004620 ... P54317 18702514
    8829 2oxs:A (1.32) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    8830 2oxu:A (1.24) BS03 CA 3.4.24.65 GO:0004222 ... P39900 17096442
    8831 2oxu:A (1.24) BS04 CA 3.4.24.65 GO:0004222 ... P39900 17096442
    8832 2oxu:A (1.24) BS05 CA 3.4.24.65 GO:0004222 ... P39900 17096442
    8833 2oxw:A (1.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 17096442
    8834 2oxw:A (1.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 17096442
    8835 2oxw:A (1.15) BS06 CA 3.4.24.65 GO:0004222 ... P39900 17096442
    8836 2oxz:A (1.9) BS05 CA 3.4.24.65 GO:0004222 ... P39900 17096442
    8837 2oxz:A (1.9) BS06 CA 3.4.24.65 GO:0004222 ... P39900 17096442
    8838 2oxz:A (1.9) BS07 CA 3.4.24.65 GO:0004222 ... P39900 17096442
    8839 2oy2:A (1.5) BS02 CA 3.4.24.34 GO:0004222 ... P22894 17096442
    8840 2oy2:A (1.5) BS03 CA 3.4.24.34 GO:0004222 ... P22894 17096442
    8841 2oy2:F (1.5) BS02 CA 3.4.24.34 GO:0004222 ... P22894 17096442
    8842 2oy2:F (1.5) BS03 CA 3.4.24.34 GO:0004222 ... P22894 17096442
    8843 2oy4:A (1.7) BS01 CA 3.4.24.34 GO:0004222 ... P22894 17096442
    8844 2oy4:A (1.7) BS02 CA 3.4.24.34 GO:0004222 ... P22894 17096442
    8845 2oy4:F (1.7) BS01 CA 3.4.24.34 GO:0004222 ... P22894 17096442
    8846 2oy4:F (1.7) BS02 CA 3.4.24.34 GO:0004222 ... P22894 17096442
    8847 2oyh:B (2.4) BS02 CA ? GO:0005102 ... P02675 17411074
    8848 2oyh:C (2.4) BS02 CA ? GO:0005102 ... P02679 17411074
    8849 2oyh:E (2.4) BS02 CA ? GO:0005102 ... P02675 17411074
    8850 2oyh:F (2.4) BS02 CA ? GO:0005102 ... P02679 17411074
    8851 2oyi:B (2.7) BS02 CA ? GO:0005102 ... P02675 17411074
    8852 2oyi:C (2.7) BS02 CA ? GO:0005102 ... P02679 17411074
    8853 2oyi:E (2.7) BS02 CA ? GO:0005102 ... P02675 17411074
    8854 2oyi:F (2.7) BS02 CA ? GO:0005102 ... P02679 17411074
    8855 2ozn:B (1.6) BS01 CA 3.2.1.35 GO:0000272 ... P26831 18716000
    8856 2ozn:B (1.6) BS02 CA 3.2.1.35 GO:0000272 ... P26831 18716000
    8857 2ozr:A (2.3) BS03 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8858 2ozr:A (2.3) BS04 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8859 2ozr:A (2.3) BS05 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8860 2ozr:B (2.3) BS03 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8861 2ozr:B (2.3) BS04 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8862 2ozr:B (2.3) BS05 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8863 2ozr:C (2.3) BS03 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8864 2ozr:C (2.3) BS04 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8865 2ozr:C (2.3) BS05 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8866 2ozr:D (2.3) BS03 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8867 2ozr:D (2.3) BS04 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8868 2ozr:D (2.3) BS05 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8869 2ozr:E (2.3) BS03 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8870 2ozr:E (2.3) BS04 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8871 2ozr:E (2.3) BS05 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8872 2ozr:F (2.3) BS03 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8873 2ozr:F (2.3) BS04 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8874 2ozr:F (2.3) BS05 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8875 2ozr:G (2.3) BS03 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8876 2ozr:G (2.3) BS04 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8877 2ozr:G (2.3) BS05 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8878 2ozr:H (2.3) BS03 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8879 2ozr:H (2.3) BS04 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8880 2ozr:H (2.3) BS05 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8881 2p0r:A (2.5) BS02 CA 3.4.22.- GO:0004198 ... O14815 N/A
    8882 2p0r:A (2.5) BS03 CA 3.4.22.- GO:0004198 ... O14815 N/A
    8883 2p0r:A (2.5) BS04 CA 3.4.22.- GO:0004198 ... O14815 N/A
    8884 2p0r:B (2.5) BS02 CA 3.4.22.- GO:0004198 ... O14815 N/A
    8885 2p0r:B (2.5) BS03 CA 3.4.22.- GO:0004198 ... O14815 N/A
    8886 2p16:A (2.3) BS01 CA 3.4.21.6 GO:0004252 ... P00742 17914785
    8887 2p1r:A (2.5) BS01 CA 2.7.1.- GO:0000287 ... Q8ZNP1 17393457
    8888 2p1r:A (2.5) BS02 CA 2.7.1.- GO:0000287 ... Q8ZNP1 17393457
    8889 2p1r:B (2.5) BS01 CA 2.7.1.- GO:0000287 ... Q8ZNP1 17393457
    8890 2p1r:B (2.5) BS02 CA 2.7.1.- GO:0000287 ... Q8ZNP1 17393457
    8891 2p1r:C (2.5) BS01 CA 2.7.1.- GO:0000287 ... Q8ZNP1 17393457
    8892 2p1r:C (2.5) BS02 CA 2.7.1.- GO:0000287 ... Q8ZNP1 17393457
    8893 2p1r:C (2.5) BS03 CA 2.7.1.- GO:0000287 ... Q8ZNP1 17393457
    8894 2p1r:D (2.5) BS01 CA 2.7.1.- GO:0000287 ... Q8ZNP1 17393457
    8895 2p1r:D (2.5) BS02 CA 2.7.1.- GO:0000287 ... Q8ZNP1 17393457
    8896 2p1r:D (2.5) BS03 CA 2.7.1.- GO:0000287 ... Q8ZNP1 17393457
    8897 2p2k:A (1.98) BS03 CA ? GO:0030246 ... P14894 17881248
    8898 2p2k:B (1.98) BS03 CA ? GO:0030246 ... P14894 17881248
    8899 2p2k:C (1.98) BS03 CA ? GO:0030246 ... P14894 17881248
    8900 2p2k:D (1.98) BS03 CA ? GO:0030246 ... P14894 17881248
    8901 2p34:A (2.1) BS03 CA ? GO:0030246 ... P81364 17881248
    8902 2p34:B (2.1) BS03 CA ? GO:0030246 ... P81364 17881248
    8903 2p34:C (2.1) BS03 CA ? GO:0030246 ... P81364 17881248
    8904 2p34:D (2.1) BS03 CA ? GO:0030246 ... P81364 17881248
    8905 2p37:A (2.1) BS04 CA ? GO:0030246 ... P81364 17881248
    8906 2p37:B (2.1) BS04 CA ? GO:0030246 ... P81364 17881248
    8907 2p37:C (2.1) BS04 CA ? GO:0030246 ... P81364 17881248
    8908 2p37:D (2.1) BS04 CA ? GO:0030246 ... P81364 17881248
    8909 2p3t:B (1.92) BS01 CA 3.4.21.6 GO:0004252 ... P00742 17536795
    8910 2p3u:B (1.62) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    8911 2p3u:B (1.62) BS02 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    8912 2p5r:A (2.45) BS01 CA 1.11.1.- GO:0004601 ... A3FNZ8 17531267
    8913 2p5r:A (2.45) BS02 CA 1.11.1.- GO:0004601 ... A3FNZ8 17531267
    8914 2p5v:A (1.99) BS01 CA ? GO:0043565 ... Q9K0L9 17374605
    8915 2p5v:B (1.99) BS01 CA ? GO:0043565 ... Q9K0L9 17374605
    8916 2p5v:C (1.99) BS01 CA ? GO:0043565 ... Q9K0L9 17374605
    8917 2p5v:D (1.99) BS01 CA ? GO:0043565 ... Q9K0L9 17374605
    8918 2p5v:E (1.99) BS01 CA ? GO:0043565 ... Q9K0L9 17374605
    8919 2p5v:F (1.99) BS01 CA ? GO:0043565 ... Q9K0L9 17374605
    8920 2p5v:G (1.99) BS01 CA ? GO:0043565 ... Q9K0L9 17374605
    8921 2p5v:H (1.99) BS01 CA ? GO:0043565 ... Q9K0L9 17374605
    8922 2p5w:B (2.2) BS01 CA ? GO:0000139 ... P61769 17644531
    8923 2p69:A (2.25) BS01 CA 3.1.3.16
    3.1.3.74
    GO:0000287 ... Q96GD0 18058037
    8924 2p6b:B (2.3) BS01 CA ? GO:0001569 ... P63098 17498738
    8925 2p6b:B (2.3) BS02 CA ? GO:0001569 ... P63098 17498738
    8926 2p6b:B (2.3) BS03 CA ? GO:0001569 ... P63098 17498738
    8927 2p6b:B (2.3) BS04 CA ? GO:0001569 ... P63098 17498738
    8928 2p6b:D (2.3) BS01 CA ? GO:0001569 ... P63098 17498738
    8929 2p6b:D (2.3) BS02 CA ? GO:0001569 ... P63098 17498738
    8930 2p6b:D (2.3) BS03 CA ? GO:0001569 ... P63098 17498738
    8931 2p6b:D (2.3) BS04 CA ? GO:0001569 ... P63098 17498738
    8932 2p6s:B (2.8) BS01 CA ? GO:0043565 ... Q9K0L9 17374605
    8933 2p6s:B (2.8) BS02 CA ? GO:0043565 ... Q9K0L9 17374605
    8934 2p6t:B (2.9) BS01 CA ? GO:0043565 ... Q9K0L9 17374605
    8935 2p6t:F (2.9) BS03 CA ? GO:0043565 ... Q9K0L9 17374605
    8936 2p9n:A (2.85) BS01 CA ? GO:0003779 ... P61157 17499050
    8937 2pag:A (1.6) BS01 CA ? GO:0046872 ... Q87TZ9 N/A
    8938 2pas:A (-1.00) BS01 CA ? GO:0005509 ... P02628 N/A
    8939 2pas:A (-1.00) BS02 CA ? GO:0005509 ... P02628 N/A
    8940 2pc6:A (2.5) BS01 CA 2.2.1.6 GO:0003984 ... Q82UZ2 17586771
    8941 2pc6:B (2.5) BS01 CA 2.2.1.6 GO:0003984 ... Q82UZ2 17586771
    8942 2pc6:C (2.5) BS01 CA 2.2.1.6 GO:0003984 ... Q82UZ2 17586771
    8943 2pc9:A (2.4) BS01 CA 4.1.1.49 GO:0004611 ... Q5SLL5 N/A
    8944 2pc9:B (2.4) BS01 CA 4.1.1.49 GO:0004611 ... Q5SLL5 N/A
    8945 2pc9:C (2.4) BS01 CA 4.1.1.49 GO:0004611 ... Q5SLL5 N/A
    8946 2pc9:D (2.4) BS01 CA 4.1.1.49 GO:0004611 ... Q5SLL5 N/A
    8947 2pda:A (3.0) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    8948 2pda:B (3.0) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    8949 2pel:A (2.25) BS03 CA ? GO:0030246 ... P02872 8656429
    8950 2pel:B (2.25) BS02 CA ? GO:0030246 ... P02872 8656429
    8951 2pel:C (2.25) BS03 CA ? GO:0030246 ... P02872 8656429
    8952 2pel:D (2.25) BS02 CA ? GO:0030246 ... P02872 8656429
    8953 2pf2:A (2.2) BS01 CA 3.4.21.5 GO:0005509 ... P00735 1547238
    8954 2pf2:A (2.2) BS02 CA 3.4.21.5 GO:0005509 ... P00735 1547238
    8955 2pf2:A (2.2) BS03 CA 3.4.21.5 GO:0005509 ... P00735 1547238
    8956 2pf2:A (2.2) BS04 CA 3.4.21.5 GO:0005509 ... P00735 1547238
    8957 2pf2:A (2.2) BS05 CA 3.4.21.5 GO:0005509 ... P00735 1547238
    8958 2pf2:A (2.2) BS06 CA 3.4.21.5 GO:0005509 ... P00735 1547238
    8959 2pf2:A (2.2) BS07 CA 3.4.21.5 GO:0005509 ... P00735 1547238
    8960 2pfj:A (3.1) BS03 CA 3.1.21.2 GO:0003677 ... P00641 17873858
    8961 2pfj:B (3.1) BS03 CA 3.1.21.2 GO:0003677 ... P00641 17873858
    8962 2phb:A (2.3) BS01 CA 3.4.21.6 GO:0004252 ... P00742 17683371
    8963 2phf:A (2.1) BS04 CA ? GO:0030246 ... Q8GSD2 17556509
    8964 2phf:B (2.1) BS05 CA ? GO:0030246 ... Q8GSD2 17556509
    8965 2phi:A (2.2) BS01 CA 3.1.1.4 GO:0002446 ... P00592 8355274
    8966 2phi:A (2.2) BS02 CA 3.1.1.4 GO:0002446 ... P00592 8355274
    8967 2phi:B (2.2) BS01 CA 3.1.1.4 GO:0002446 ... P00592 8355274
    8968 2phi:B (2.2) BS02 CA 3.1.1.4 GO:0002446 ... P00592 8355274
    8969 2phr:A (1.9) BS04 CA ? GO:0030246 ... Q8GSD2 17556509
    8970 2phr:B (1.9) BS05 CA ? GO:0030246 ... Q8GSD2 17556509
    8971 2pht:A (2.1) BS04 CA ? GO:0030246 ... Q8GSD2 17556509
    8972 2pht:B (2.1) BS06 CA ? GO:0030246 ... Q8GSD2 17556509
    8973 2phu:A (2.2) BS03 CA ? GO:0030246 ... Q8GSD2 17556509
    8974 2phu:B (2.2) BS07 CA ? GO:0030246 ... Q8GSD2 17556509
    8975 2phw:A (1.8) BS04 CA ? GO:0030246 ... Q8GSD2 17556509
    8976 2phw:B (1.8) BS06 CA ? GO:0030246 ... Q8GSD2 17556509
    8977 2phx:A (1.8) BS04 CA ? GO:0030246 ... Q8GSD2 17556509
    8978 2phx:B (1.8) BS05 CA ? GO:0030246 ... Q8GSD2 17556509
    8979 2pjp:A (2.3) BS02 CA ? GO:0001514 ... P14081 17537456
    8980 2pjt:A (2.8) BS03 CA 3.4.24.- GO:0004222 ... P45452 17606376
    8981 2pjt:A (2.8) BS04 CA 3.4.24.- GO:0004222 ... P45452 17606376
    8982 2pjt:A (2.8) BS05 CA 3.4.24.- GO:0004222 ... P45452 17606376
    8983 2pjt:B (2.8) BS03 CA 3.4.24.- GO:0004222 ... P45452 17606376
    8984 2pjt:B (2.8) BS04 CA 3.4.24.- GO:0004222 ... P45452 17606376
    8985 2pjt:C (2.8) BS03 CA 3.4.24.- GO:0004222 ... P45452 17606376
    8986 2pjt:C (2.8) BS04 CA 3.4.24.- GO:0004222 ... P45452 17606376
    8987 2pjt:D (2.8) BS03 CA 3.4.24.- GO:0004222 ... P45452 17606376
    8988 2pjt:D (2.8) BS04 CA 3.4.24.- GO:0004222 ... P45452 17606376
    8989 2plx:A (1.56) BS02 CA 3.4.21.4 GO:0004175 ... P00760 17640870
    8990 2pmy:A (2.3) BS01 CA ? GO:0005509 ... Q8IZ41 N/A
    8991 2pmy:A (2.3) BS02 CA ? GO:0005509 ... Q8IZ41 N/A
    8992 2pmy:B (2.3) BS01 CA ? GO:0005509 ... Q8IZ41 N/A
    8993 2pmy:B (2.3) BS02 CA ? GO:0005509 ... Q8IZ41 N/A
    8994 2pnc:A (2.4) BS02 CA 1.4.3.21 GO:0005507 ... Q29437 17989349
    8995 2pnc:A (2.4) BS03 CA 1.4.3.21 GO:0005507 ... Q29437 17989349
    8996 2pnc:B (2.4) BS02 CA 1.4.3.21 GO:0005507 ... Q29437 17989349
    8997 2pnc:B (2.4) BS03 CA 1.4.3.21 GO:0005507 ... Q29437 17989349
    8998 2pny:A (1.81) BS01 CA 5.3.3.2 GO:0004452 ... Q9BXS1 N/A
    8999 2poj:A (-1.00) BS03 CA 3.4.24.65 GO:0004222 ... P39900 17997411
    9000 2poj:A (-1.00) BS04 CA 3.4.24.65 GO:0004222 ... P39900 17997411

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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