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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8601 2nuc:A (2.0) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    8602 2nvo:A (1.89) BS01 CA ? GO:0003723 ... Q9RUW8 17392270
    8603 2nw6:A (1.8) BS01 CA 3.1.1.3 GO:0004806 ... P22088 18386861
    8604 2nxp:A (2.17) BS01 CA ? N/A Q15542 17227857
    8605 2nxp:B (2.17) BS01 CA ? N/A Q15542 17227857
    8606 2nxp:C (2.17) BS01 CA ? N/A Q15542 17227857
    8607 2nxp:D (2.17) BS01 CA ? N/A Q15542 17227857
    8608 2nxp:E (2.17) BS01 CA ? N/A Q15542 17227857
    8609 2nxp:F (2.17) BS01 CA ? N/A Q15542 17227857
    8610 2nxp:G (2.17) BS01 CA ? N/A Q15542 17227857
    8611 2nxp:H (2.17) BS01 CA ? N/A Q15542 17227857
    8612 2nxq:A (2.4) BS01 CA ? GO:0001891 ... P38505 17554780
    8613 2nxq:A (2.4) BS02 CA ? GO:0001891 ... P38505 17554780
    8614 2nxq:B (2.4) BS01 CA ? GO:0001891 ... P38505 17554780
    8615 2nxq:B (2.4) BS02 CA ? GO:0001891 ... P38505 17554780
    8616 2nz0:A (3.2) BS01 CA ? GO:0005509 ... Q9NZI2 17187064
    8617 2nz0:A (3.2) BS02 CA ? GO:0005509 ... Q9NZI2 17187064
    8618 2nz0:C (3.2) BS01 CA ? GO:0005509 ... Q9NZI2 17187064
    8619 2nz0:C (3.2) BS02 CA ? GO:0005509 ... Q9NZI2 17187064
    8620 2nz9:A (3.79) BS02 CA 3.4.24.69 GO:0004222 ... P0DPI1 17173035
    8621 2nzm:A (1.8) BS04 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    8622 2nzm:A (1.8) BS05 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    8623 2o04:A (1.7) BS03 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    8624 2o04:A (1.7) BS04 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    8625 2o0v:A (1.9) BS04 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    8626 2o0v:A (1.9) BS05 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    8627 2o0w:A (1.9) BS01 CA 4.2.2.2 GO:0005576 ... P39116 N/A
    8628 2o0w:A (1.9) BS02 CA 4.2.2.2 GO:0005576 ... P39116 N/A
    8629 2o17:A (2.3) BS04 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    8630 2o17:A (2.3) BS05 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    8631 2o18:A (2.2) BS01 CA 2.7.1.180 GO:0005886 ... P0AB85 N/A
    8632 2o18:B (2.2) BS01 CA 2.7.1.180 GO:0005886 ... P0AB85 N/A
    8633 2o18:C (2.2) BS01 CA 2.7.1.180 GO:0005886 ... P0AB85 N/A
    8634 2o18:D (2.2) BS01 CA 2.7.1.180 GO:0005886 ... P0AB85 N/A
    8635 2o1d:A (2.0) BS03 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    8636 2o1d:A (2.0) BS04 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    8637 2o1j:B (2.7) BS01 CA ? N/A Q9PYC1 N/A
    8638 2o1j:D (2.7) BS01 CA ? N/A Q9PYC1 N/A
    8639 2o1k:B (1.67) BS01 CA ? N/A P04512 N/A
    8640 2o39:C (2.85) BS01 CA ? N/A P15529 17220899
    8641 2o39:D (2.85) BS01 CA ? N/A P15529 17220899
    8642 2o39:D (2.85) BS02 CA ? N/A P15529 17220899
    8643 2o4v:A (1.94) BS01 CA ? GO:0006811 ... P05695 17187075
    8644 2o4v:A (1.94) BS04 CA ? GO:0006811 ... P05695 17187075
    8645 2o4v:B (1.94) BS01 CA ? GO:0006811 ... P05695 17187075
    8646 2o4v:B (1.94) BS03 CA ? GO:0006811 ... P05695 17187075
    8647 2o4v:C (1.94) BS01 CA ? GO:0006811 ... P05695 17187075
    8648 2o4v:C (1.94) BS02 CA ? GO:0006811 ... P05695 17187075
    8649 2o5g:A (1.08) BS02 CA ? GO:0005509 ... P62149 N/A
    8650 2o5g:A (1.08) BS03 CA ? GO:0005509 ... P62149 N/A
    8651 2o5g:A (1.08) BS04 CA ? GO:0005509 ... P62149 N/A
    8652 2o5g:A (1.08) BS05 CA ? GO:0005509 ... P62149 N/A
    8653 2o60:A (1.55) BS02 CA ? GO:0005509 ... P62149 N/A
    8654 2o60:A (1.55) BS03 CA ? GO:0005509 ... P62149 N/A
    8655 2o60:A (1.55) BS04 CA ? GO:0005509 ... P62149 N/A
    8656 2o60:A (1.55) BS05 CA ? GO:0005509 ... P62149 N/A
    8657 2o6h:A (2.7) BS01 CA 2.5.1.78 GO:0000906 ... Q8YGH2 17854827
    8658 2o6h:B (2.7) BS01 CA 2.5.1.78 GO:0000906 ... Q8YGH2 17854827
    8659 2o72:A (2.0) BS01 CA ? GO:0005509 ... P12830 17850815
    8660 2o72:A (2.0) BS02 CA ? GO:0005509 ... P12830 17850815
    8661 2o72:A (2.0) BS03 CA ? GO:0005509 ... P12830 17850815
    8662 2o72:A (2.0) BS04 CA ? GO:0005509 ... P12830 17850815
    8663 2o72:A (2.0) BS05 CA ? GO:0005509 ... P12830 17850815
    8664 2o86:A (2.8) BS01 CA 1.11.1.7 GO:0004601 ... A5JUY8 N/A
    8665 2o8o:A (1.35) BS01 CA 3.4.24.3 N/A Q9X721 N/A
    8666 2o8o:A (1.35) BS02 CA 3.4.24.3 N/A Q9X721 N/A
    8667 2o8o:B (1.35) BS01 CA 3.4.24.3 N/A Q9X721 N/A
    8668 2o8o:B (1.35) BS02 CA 3.4.24.3 N/A Q9X721 N/A
    8669 2o9q:A (1.7) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    8670 2oa8:A (2.1) BS02 CA 3.1.11.2 GO:0003676 ... Q91XB0 17293595
    8671 2oa8:B (2.1) BS02 CA 3.1.11.2 GO:0003676 ... Q91XB0 17293595
    8672 2oaa:A (1.5) BS03 CA ? GO:0046872 ... Q8RNV5 17344322
    8673 2oaa:A (1.5) BS04 CA ? GO:0046872 ... Q8RNV5 17344322
    8674 2oaa:B (1.5) BS03 CA ? GO:0046872 ... Q8RNV5 17344322
    8675 2oaa:B (1.5) BS04 CA ? GO:0046872 ... Q8RNV5 17344322
    8676 2oai:A (1.8) BS01 CA ? GO:0050660 ... Q87DZ3 N/A
    8677 2oai:A (1.8) BS02 CA ? GO:0050660 ... Q87DZ3 N/A
    8678 2obh:A (1.8) BS03 CA ? GO:0005509 ... P41208 17897675
    8679 2obh:A (1.8) BS04 CA ? GO:0005509 ... P41208 17897675
    8680 2obh:B (1.8) BS02 CA ? GO:0005509 ... P41208 17897675
    8681 2obh:B (1.8) BS03 CA ? GO:0005509 ... P41208 17897675
    8682 2obl:A (1.8) BS01 CA 7.4.2.8 GO:0005524 ... B7UMA6 17237797
    8683 2obm:A (2.25) BS01 CA 7.4.2.8 GO:0005524 ... B7UMA6 17237797
    8684 2odi:A (1.45) BS03 CA ? GO:0046872 ... Q8RNV8 17445830
    8685 2odi:A (1.45) BS04 CA ? GO:0046872 ... Q8RNV8 17445830
    8686 2odi:B (1.45) BS03 CA ? GO:0046872 ... Q8RNV8 17445830
    8687 2oeo:A (2.0) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    8688 2of1:A (1.92) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    8689 2og9:A (1.9) BS01 CA 4.2.1.-
    4.2.1.42
    GO:0000287 ... Q12GE3 N/A
    8690 2og9:B (1.9) BS01 CA 4.2.1.-
    4.2.1.42
    GO:0000287 ... Q12GE3 N/A
    8691 2ogy:A (2.3) BS01 CA 2.1.1.258 GO:0005509 ... Q46389 17172470
    8692 2ogy:B (2.3) BS01 CA 2.1.1.258 GO:0005509 ... Q46389 17172470
    8693 2ojv:A (2.4) BS01 CA 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    8694 2okx:A (1.9) BS01 CA 3.2.1.40 GO:0003824 ... Q93RE7 17936784
    8695 2okx:B (1.9) BS01 CA 3.2.1.40 GO:0003824 ... Q93RE7 17936784
    8696 2olg:A (1.7) BS01 CA 3.4.21.- GO:0004252 ... O97366 17287215
    8697 2omt:B (2.0) BS01 CA ? GO:0005509 ... P12830 17715295
    8698 2omv:B (1.9) BS01 CA ? GO:0005509 ... P12830 17540170
    8699 2omx:B (1.7) BS01 CA ? GO:0005509 ... P12830 17715295
    8700 2omy:B (1.7) BS01 CA ? GO:0005509 ... P12830 17540170
    8701 2oo4:A (2.003) BS01 CA ? GO:0007219 ... Q04721 17401372
    8702 2oo4:A (2.003) BS02 CA ? GO:0007219 ... Q04721 17401372
    8703 2oo4:A (2.003) BS03 CA ? GO:0007219 ... Q04721 17401372
    8704 2oo4:B (2.003) BS01 CA ? GO:0007219 ... Q04721 17401372
    8705 2oo4:B (2.003) BS02 CA ? GO:0007219 ... Q04721 17401372
    8706 2oo4:B (2.003) BS03 CA ? GO:0007219 ... Q04721 17401372
    8707 2oot:A (1.64) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 17329803
    8708 2opo:A (1.75) BS01 CA ? GO:0005509 ... Q84V36 18250440
    8709 2opo:A (1.75) BS02 CA ? GO:0005509 ... Q84V36 18250440
    8710 2opo:B (1.75) BS01 CA ? GO:0005509 ... Q84V36 18250440
    8711 2opo:B (1.75) BS02 CA ? GO:0005509 ... Q84V36 18250440
    8712 2opo:C (1.75) BS01 CA ? GO:0005509 ... Q84V36 18250440
    8713 2opo:C (1.75) BS02 CA ? GO:0005509 ... Q84V36 18250440
    8714 2opo:D (1.75) BS01 CA ? GO:0005509 ... Q84V36 18250440
    8715 2opo:D (1.75) BS02 CA ? GO:0005509 ... Q84V36 18250440
    8716 2oqu:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 17452791
    8717 2or4:A (1.62) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 17567119
    8718 2orj:A (1.8) BS01 CA ? N/A P35247 17417879
    8719 2orj:A (1.8) BS02 CA ? N/A P35247 17417879
    8720 2orj:A (1.8) BS03 CA ? N/A P35247 17417879
    8721 2orj:B (1.8) BS01 CA ? N/A P35247 17417879
    8722 2orj:B (1.8) BS02 CA ? N/A P35247 17417879
    8723 2orj:B (1.8) BS03 CA ? N/A P35247 17417879
    8724 2orj:C (1.8) BS01 CA ? N/A P35247 17417879
    8725 2orj:C (1.8) BS02 CA ? N/A P35247 17417879
    8726 2orj:C (1.8) BS03 CA ? N/A P35247 17417879
    8727 2ork:A (1.89) BS01 CA ? N/A P35247 17417879
    8728 2ork:A (1.89) BS02 CA ? N/A P35247 17417879
    8729 2ork:A (1.89) BS03 CA ? N/A P35247 17417879
    8730 2ork:B (1.89) BS01 CA ? N/A P35247 17417879
    8731 2ork:B (1.89) BS02 CA ? N/A P35247 17417879
    8732 2ork:B (1.89) BS03 CA ? N/A P35247 17417879
    8733 2ork:C (1.89) BS01 CA ? N/A P35247 17417879
    8734 2ork:C (1.89) BS02 CA ? N/A P35247 17417879
    8735 2ork:C (1.89) BS03 CA ? N/A P35247 17417879
    8736 2os8:C (3.27) BS01 CA ? GO:0005509 ... Q26066 17502101
    8737 2os9:A (1.7) BS01 CA ? N/A P35247 17417879
    8738 2os9:A (1.7) BS02 CA ? N/A P35247 17417879
    8739 2os9:A (1.7) BS03 CA ? N/A P35247 17417879
    8740 2os9:B (1.7) BS01 CA ? N/A P35247 17417879
    8741 2os9:B (1.7) BS02 CA ? N/A P35247 17417879
    8742 2os9:B (1.7) BS03 CA ? N/A P35247 17417879
    8743 2os9:C (1.7) BS01 CA ? N/A P35247 17417879
    8744 2os9:C (1.7) BS02 CA ? N/A P35247 17417879
    8745 2os9:C (1.7) BS03 CA ? N/A P35247 17417879
    8746 2osd:A (2.3) BS01 CA ? N/A Q58855 N/A
    8747 2ost:A (3.1) BS03 CA ? GO:0003676 ... Q57253 17410205
    8748 2ost:B (3.1) BS03 CA ? GO:0003676 ... Q57253 17410205
    8749 2ot4:A (1.5) BS01 CA 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    8750 2ot4:B (1.5) BS01 CA 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    8751 2otg:C (3.12) BS01 CA ? GO:0005509 ... Q26066 17502101
    8752 2otv:A (1.56) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    8753 2ovu:A (1.5) BS03 CA ? GO:0030246 ... P14894 17881248
    8754 2ovx:A (2.0) BS03 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8755 2ovx:A (2.0) BS04 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8756 2ovx:A (2.0) BS05 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8757 2ovx:A (2.0) BS06 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8758 2ovx:A (2.0) BS07 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8759 2ovx:B (2.0) BS03 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8760 2ovx:B (2.0) BS04 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8761 2ovx:B (2.0) BS05 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8762 2ovx:B (2.0) BS06 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8763 2ovx:B (2.0) BS07 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8764 2ovz:A (2.0) BS03 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8765 2ovz:A (2.0) BS04 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8766 2ovz:A (2.0) BS05 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8767 2ovz:A (2.0) BS06 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8768 2ovz:A (2.0) BS07 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8769 2ovz:B (2.0) BS03 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8770 2ovz:B (2.0) BS04 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8771 2ovz:B (2.0) BS05 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8772 2ovz:B (2.0) BS06 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8773 2ovz:B (2.0) BS07 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8774 2ow0:A (2.0) BS03 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8775 2ow0:A (2.0) BS04 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8776 2ow0:A (2.0) BS05 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8777 2ow0:A (2.0) BS06 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8778 2ow0:B (2.0) BS03 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8779 2ow0:B (2.0) BS04 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8780 2ow0:B (2.0) BS05 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8781 2ow0:B (2.0) BS06 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8782 2ow1:A (2.2) BS03 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8783 2ow1:A (2.2) BS04 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8784 2ow1:A (2.2) BS05 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8785 2ow1:A (2.2) BS06 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8786 2ow1:B (2.2) BS03 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8787 2ow1:B (2.2) BS04 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8788 2ow1:B (2.2) BS05 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8789 2ow1:B (2.2) BS06 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8790 2ow2:A (2.9) BS03 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8791 2ow2:A (2.9) BS04 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8792 2ow2:A (2.9) BS05 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8793 2ow2:B (2.9) BS03 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8794 2ow2:B (2.9) BS04 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8795 2ow2:B (2.9) BS05 CA 3.4.24.35 GO:0004222 ... P14780 17599356
    8796 2ow4:A (1.6) BS03 CA ? GO:0030246 ... P81364 17881248
    8797 2ow9:A (1.74) BS03 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8798 2ow9:A (1.74) BS04 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8799 2ow9:A (1.74) BS05 CA 3.4.24.- GO:0004222 ... P45452 17623656
    8800 2ow9:B (1.74) BS03 CA 3.4.24.- GO:0004222 ... P45452 17623656

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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