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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8401 2l5y:A (-1.00) BS01 CA ? GO:0005246 ... Q9P246 21217057
    8402 2l7l:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 21360154
    8403 2l7l:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 21360154
    8404 2l7l:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 21360154
    8405 2l7l:A (-1.00) BS05 CA ? GO:0000086 ... P0DP23 21360154
    8406 2l98:A (-1.00) BS01 CA ? GO:0005509 ... P63316 21226534
    8407 2l98:A (-1.00) BS02 CA ? GO:0005509 ... P63316 21226534
    8408 2lal:A (1.8) BS03 CA ? GO:0030246 ... P02870 7731952
    8409 2lal:C (1.8) BS03 CA ? GO:0030246 ... P02870 7731952
    8410 2lan:A (-1.00) BS01 CA ? GO:0005509 ... Q9NZU7 N/A
    8411 2lap:A (-1.00) BS01 CA ? GO:0005509 ... Q9NZU7 N/A
    8412 2lap:A (-1.00) BS02 CA ? GO:0005509 ... Q9NZU7 N/A
    8413 2lc5:A (-1.00) BS01 CA ? GO:0005509 ... C4M0U8 21114322
    8414 2lc5:A (-1.00) BS02 CA ? GO:0005509 ... C4M0U8 21114322
    8415 2lcp:A (-1.00) BS01 CA ? GO:0005245 ... P62166 22227393
    8416 2lcp:A (-1.00) BS02 CA ? GO:0005245 ... P62166 22227393
    8417 2lcp:A (-1.00) BS03 CA ? GO:0005245 ... P62166 22227393
    8418 2lgf:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 22711531
    8419 2lgf:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 22711531
    8420 2lgf:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 22711531
    8421 2lgf:A (-1.00) BS05 CA ? GO:0000086 ... P0DP23 22711531
    8422 2lgp:A (-1.00) BS01 CA ? N/A P01130 22091758
    8423 2lgp:A (-1.00) BS02 CA ? N/A P01130 22091758
    8424 2lhh:A (-1.00) BS01 CA ? GO:0005509 ... P06787 22280008
    8425 2lhh:A (-1.00) BS02 CA ? GO:0005509 ... P06787 22280008
    8426 2lhh:A (-1.00) BS03 CA ? GO:0005509 ... P06787 22280008
    8427 2lhi:A (-1.00) BS01 CA ?
    3.1.3.16
    GO:0000131 ... P06787
    P23287
    22280008
    8428 2lhi:A (-1.00) BS02 CA ?
    3.1.3.16
    GO:0000131 ... P06787
    P23287
    22280008
    8429 2lhi:A (-1.00) BS03 CA ?
    3.1.3.16
    GO:0000131 ... P06787
    P23287
    22280008
    8430 2lip:A (2.1) BS01 CA 3.1.1.3 GO:0004806 ... P22088 9032074
    8431 2llo:A (-1.00) BS02 CA ? GO:0005509 ... P0DP33 22275375
    8432 2llo:A (-1.00) BS03 CA ? GO:0005509 ... P0DP33 22275375
    8433 2llq:A (-1.00) BS02 CA ? GO:0005509 ... P0DP33 22275375
    8434 2llq:A (-1.00) BS03 CA ? GO:0005509 ... P0DP33 22275375
    8435 2lm5:A (-1.00) BS01 CA ? GO:0000287 ... Q99828 22283712
    8436 2lm5:A (-1.00) BS02 CA ? GO:0000287 ... Q99828 22283712
    8437 2lmt:A (-1.00) BS01 CA ? GO:0005509 ... P49258 22851764
    8438 2lmt:A (-1.00) BS02 CA ? GO:0005509 ... P49258 22851764
    8439 2lmu:A (-1.00) BS01 CA ? GO:0005509 ... P49258 22851764
    8440 2lmu:A (-1.00) BS02 CA ? GO:0005509 ... P49258 22851764
    8441 2lmv:A (-1.00) BS01 CA ? GO:0005509 ... P49258 22851764
    8442 2lmv:A (-1.00) BS02 CA ? GO:0005509 ... P49258 22851764
    8443 2lmv:A (-1.00) BS03 CA ? GO:0005509 ... P49258 22851764
    8444 2lp2:A (-1.00) BS01 CA ? GO:0005509 ... P23297 23351007
    8445 2lp2:A (-1.00) BS02 CA ? GO:0005509 ... P23297 23351007
    8446 2lp2:B (-1.00) BS01 CA ? GO:0005509 ... P23297 23351007
    8447 2lp2:B (-1.00) BS02 CA ? GO:0005509 ... P23297 23351007
    8448 2lp3:A (-1.00) BS01 CA ? GO:0005509 ... P23297 23351007
    8449 2lp3:A (-1.00) BS02 CA ? GO:0005509 ... P23297 23351007
    8450 2lp3:B (-1.00) BS01 CA ? GO:0005509 ... P23297 23351007
    8451 2lp3:B (-1.00) BS02 CA ? GO:0005509 ... P23297 23351007
    8452 2lqc:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 22518098
    8453 2lqc:A (-1.00) BS03 CA ? GO:0005509 ... P0DP23 22518098
    8454 2lqp:A (-1.00) BS01 CA N/A GO:0005509 ... N/A 22518098
    8455 2lqp:A (-1.00) BS02 CA N/A GO:0005509 ... N/A 22518098
    8456 2lro:A (-1.00) BS01 CA 3.2.1.4 GO:0008810 ... P16218 23356867
    8457 2lro:A (-1.00) BS02 CA 3.2.1.4 GO:0008810 ... P16218 23356867
    8458 2lrp:A (-1.00) BS01 CA 3.2.1.4 GO:0008810 ... P16218 23356867
    8459 2lrp:A (-1.00) BS02 CA 3.2.1.4 GO:0008810 ... P16218 23356867
    8460 2ltn:A (1.7) BS02 CA ? GO:0030246 ... P02867 2708344
    8461 2ltn:C (1.7) BS02 CA ? GO:0030246 ... P02867 2708344
    8462 2lux:A (-1.00) BS01 CA ? GO:0005509 ... P23297 N/A
    8463 2lux:A (-1.00) BS02 CA ? GO:0005509 ... P23297 N/A
    8464 2lux:B (-1.00) BS01 CA ? GO:0005509 ... P23297 N/A
    8465 2lux:B (-1.00) BS02 CA ? GO:0005509 ... P23297 N/A
    8466 2lv6:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 22908850
    8467 2lv6:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 22908850
    8468 2lv6:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 22908850
    8469 2lv6:A (-1.00) BS05 CA ? GO:0000086 ... P0DP23 22908850
    8470 2lv7:A (-1.00) BS01 CA ? GO:0005509 ... Q86V35 22989873
    8471 2lv7:A (-1.00) BS02 CA ? GO:0005509 ... Q86V35 22989873
    8472 2lvk:A (-1.00) BS01 CA ? GO:0005509 ... O82040 23011803
    8473 2lvk:A (-1.00) BS02 CA ? GO:0005509 ... O82040 23011803
    8474 2m0j:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 22877078
    8475 2m0j:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 22877078
    8476 2m0j:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 22877078
    8477 2m0j:A (-1.00) BS05 CA ? GO:0000086 ... P0DP23 22877078
    8478 2m0k:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 22877078
    8479 2m0k:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 22877078
    8480 2m0k:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 22877078
    8481 2m0k:A (-1.00) BS05 CA ? GO:0000086 ... P0DP23 22877078
    8482 2m0p:A (-1.00) BS01 CA ? N/A P98164 23275343
    8483 2m28:A (-1.00) BS01 CA ? GO:0005509 ... Q8VHC5 N/A
    8484 2m28:A (-1.00) BS02 CA ? GO:0005509 ... Q8VHC5 N/A
    8485 2m29:A (-1.00) BS01 CA ? GO:0005509 ... Q8VHC5 N/A
    8486 2m3s:A (-1.00) BS01 CA ? GO:0005509 ... P62149 23630096
    8487 2m3s:A (-1.00) BS02 CA ? GO:0005509 ... P62149 23630096
    8488 2m3s:A (-1.00) BS03 CA ? GO:0005509 ... P62149 23630096
    8489 2m3s:A (-1.00) BS04 CA ? GO:0005509 ... P62149 23630096
    8490 2m55:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 23607618
    8491 2m55:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 23607618
    8492 2m55:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 23607618
    8493 2m55:A (-1.00) BS05 CA ? GO:0000086 ... P0DP23 23607618
    8494 2m5e:A (-1.00) BS02 CA ? GO:0005509 ... P07463 28343066
    8495 2m5e:A (-1.00) BS03 CA ? GO:0005509 ... P07463 28343066
    8496 2m7m:A (-1.00) BS01 CA ? GO:0005509 ... P38505 23782698
    8497 2m7m:A (-1.00) BS02 CA ? GO:0005509 ... P38505 23782698
    8498 2m7n:A (-1.00) BS01 CA ? GO:0001891 ... P38505 23782698
    8499 2m7n:A (-1.00) BS02 CA ? GO:0001891 ... P38505 23782698
    8500 2m7p:A (-1.00) BS01 CA ? N/A P01130
    Q9HBX9
    23926099
    8501 2m96:A (-1.00) BS01 CA ? N/A Q8WXD0 N/A
    8502 2m98:A (-1.00) BS01 CA ? GO:0000160 ... Q930Y6 24364624
    8503 2mas:A (2.3) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005829 ... Q27546 9572842
    8504 2mas:B (2.3) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005829 ... Q27546 9572842
    8505 2mas:C (2.3) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005829 ... Q27546 9572842
    8506 2mas:D (2.3) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005829 ... Q27546 9572842
    8507 2mbx:A (-1.00) BS01 CA ? GO:0005509 ... Q90YK9 25116395
    8508 2mbx:A (-1.00) BS02 CA ? GO:0005509 ... Q90YK9 25116395
    8509 2mes:A (-1.00) BS02 CA N/A GO:0005509 ... N/A 24705785
    8510 2mes:A (-1.00) BS03 CA N/A GO:0005509 ... N/A 24705785
    8511 2mes:A (-1.00) BS04 CA N/A GO:0005509 ... N/A 24705785
    8512 2mes:A (-1.00) BS05 CA N/A GO:0005509 ... N/A 24705785
    8513 2mgu:A (-1.00) BS01 CA ? GO:0000086 ... P0DP29 24500712
    8514 2mgu:A (-1.00) BS02 CA ? GO:0000086 ... P0DP29 24500712
    8515 2mgu:A (-1.00) BS03 CA ? GO:0000086 ... P0DP29 24500712
    8516 2mgu:A (-1.00) BS04 CA ? GO:0000086 ... P0DP29 24500712
    8517 2min:B (2.03) BS02 CA 1.18.6.1 GO:0005524 ... P07329 9063865
    8518 2min:B (2.03) BS03 CA 1.18.6.1 GO:0005524 ... P07329 9063865
    8519 2min:D (2.03) BS01 CA 1.18.6.1 GO:0005524 ... P07329 9063865
    8520 2min:D (2.03) BS02 CA 1.18.6.1 GO:0005524 ... P07329 9063865
    8521 2mkp:C (-1.00) BS02 CA ? GO:0005509 ... P63316 24333682
    8522 2ml1:A (-1.00) BS01 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8523 2ml1:A (-1.00) BS02 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8524 2ml1:A (-1.00) BS03 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8525 2ml1:A (-1.00) BS04 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8526 2ml1:A (-1.00) BS05 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8527 2ml1:A (-1.00) BS06 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8528 2ml2:A (-1.00) BS01 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8529 2ml2:A (-1.00) BS02 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8530 2ml2:A (-1.00) BS03 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8531 2ml2:A (-1.00) BS04 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8532 2ml2:A (-1.00) BS05 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8533 2ml2:A (-1.00) BS06 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8534 2ml3:A (-1.00) BS01 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8535 2ml3:A (-1.00) BS02 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8536 2ml3:A (-1.00) BS03 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8537 2ml3:A (-1.00) BS04 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8538 2ml3:A (-1.00) BS05 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8539 2ml3:A (-1.00) BS06 CA 5.1.3.37 GO:0005509 ... Q9ZFH0 25266718
    8540 2mle:C (-1.00) BS01 CA ? GO:0005509 ... P63316 18803402
    8541 2mle:C (-1.00) BS02 CA ? GO:0005509 ... P63316 18803402
    8542 2mlf:C (-1.00) BS01 CA ? GO:0005509 ... P63316 18803402
    8543 2mlf:C (-1.00) BS02 CA ? GO:0005509 ... P63316 18803402
    8544 2mlr:A (-1.00) BS02 CA 3.4.24.65 GO:0004222 ... P39900 25412686
    8545 2mlr:A (-1.00) BS03 CA 3.4.24.65 GO:0004222 ... P39900 25412686
    8546 2mlr:A (-1.00) BS04 CA 3.4.24.65 GO:0004222 ... P39900 25412686
    8547 2mls:A (-1.00) BS02 CA 3.4.24.65 GO:0004222 ... P39900 25412686
    8548 2mls:A (-1.00) BS03 CA 3.4.24.65 GO:0004222 ... P39900 25412686
    8549 2mls:A (-1.00) BS04 CA 3.4.24.65 GO:0004222 ... P39900 25412686
    8550 2msb:A (1.7) BS01 CA ? N/A P19999 1436090
    8551 2msb:A (1.7) BS02 CA ? N/A P19999 1436090
    8552 2msb:A (1.7) BS03 CA ? N/A P19999 1436090
    8553 2msb:B (1.7) BS02 CA ? N/A P19999 1436090
    8554 2msb:B (1.7) BS03 CA ? N/A P19999 1436090
    8555 2msb:B (1.7) BS04 CA ? N/A P19999 1436090
    8556 2mte:A (-1.00) BS01 CA 3.2.1.176 GO:0000272 ... P0C2S5 25270376
    8557 2mte:A (-1.00) BS02 CA 3.2.1.176 GO:0000272 ... P0C2S5 25270376
    8558 2mze:A (-1.00) BS01 CA 3.4.24.23 GO:0002779 ... P09237 26439767
    8559 2mze:A (-1.00) BS02 CA 3.4.24.23 GO:0002779 ... P09237 26439767
    8560 2mzh:A (-1.00) BS01 CA 3.4.24.23 GO:0002779 ... P09237 26439767
    8561 2mzh:A (-1.00) BS02 CA 3.4.24.23 GO:0002779 ... P09237 26439767
    8562 2mzi:A (-1.00) BS01 CA 3.4.24.23 GO:0002779 ... P09237 26439767
    8563 2mzi:A (-1.00) BS02 CA 3.4.24.23 GO:0002779 ... P09237 26439767
    8564 2mzp:C (-1.00) BS02 CA ? GO:0005509 ... P63316 25996354
    8565 2n27:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23 27339229
    8566 2n27:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 27339229
    8567 2n27:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 27339229
    8568 2n6a:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23
    Q9UKL4
    N/A
    8569 2n6a:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23
    Q9UKL4
    N/A
    8570 2n6a:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23
    Q9UKL4
    N/A
    8571 2n6a:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23
    Q9UKL4
    N/A
    8572 2n79:C (-1.00) BS01 CA ? GO:0005509 ... P63316 26341255
    8573 2n7l:C (-1.00) BS01 CA ? GO:0005509 ... P19429
    P63316
    N/A
    8574 2n8r:A (-1.00) BS03 CA 3.4.24.65 GO:0004222 ... P39900 26887942
    8575 2n8r:A (-1.00) BS04 CA 3.4.24.65 GO:0004222 ... P39900 26887942
    8576 2n8r:A (-1.00) BS05 CA 3.4.24.65 GO:0004222 ... P39900 26887942
    8577 2n8y:A (-1.00) BS01 CA ? GO:0005509 ... P12814 27272015
    8578 2nce:A (-1.00) BS01 CA 2.7.11.13 N/A P05696 N/A
    8579 2nce:A (-1.00) BS02 CA 2.7.11.13 N/A P05696 N/A
    8580 2nob:A (2.1) BS03 CA 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 17114185
    8581 2noe:A (2.2) BS03 CA 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 17114185
    8582 2nof:A (2.35) BS03 CA 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 17114185
    8583 2noh:A (2.01) BS03 CA 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 17114185
    8584 2noi:A (2.35) BS03 CA 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 17114185
    8585 2nol:A (2.57) BS03 CA 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 17114185
    8586 2noz:A (2.43) BS03 CA 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 17114185
    8587 2np0:A (2.62) BS03 CA 3.4.24.69 GO:0004222 ... P10844 17167418
    8588 2np0:A (2.62) BS04 CA 3.4.24.69 GO:0004222 ... P10844 17167418
    8589 2np0:A (2.62) BS05 CA 3.4.24.69 GO:0004222 ... P10844 17167418
    8590 2nq6:A (1.5) BS03 CA 3.4.11.18 GO:0006508 ... P53582 17114291
    8591 2nqa:A (2.2) BS02 CA 3.4.22.53 GO:0004198 ... P17655 N/A
    8592 2nqa:A (2.2) BS03 CA 3.4.22.53 GO:0004198 ... P17655 N/A
    8593 2nqa:A (2.2) BS04 CA 3.4.22.53 GO:0004198 ... P17655 N/A
    8594 2nqa:B (2.2) BS03 CA 3.4.22.53 GO:0004198 ... A6NHC0 N/A
    8595 2nqa:B (2.2) BS04 CA 3.4.22.53 GO:0004198 ... A6NHC0 N/A
    8596 2nqg:A (2.04) BS01 CA 3.4.22.52 GO:0004198 ... P97571 17218315
    8597 2nqg:A (2.04) BS02 CA 3.4.22.52 GO:0004198 ... P97571 17218315
    8598 2nqi:A (2.04) BS01 CA 3.4.22.52 GO:0004198 ... P97571 17218315
    8599 2nqi:A (2.04) BS02 CA 3.4.22.52 GO:0004198 ... P97571 17218315
    8600 2nqx:A (2.95) BS01 CA 1.11.1.7 GO:0004601 ... P80025 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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