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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8201 2jdn:D (1.3) BS03 CA ? GO:0030246 ... Q9HYN5 17540045
    8202 2jdp:A (1.3) BS02 CA ? GO:0030246 ... Q9HYN5 17540045
    8203 2jdp:A (1.3) BS03 CA ? GO:0030246 ... Q9HYN5 17540045
    8204 2jdp:B (1.3) BS02 CA ? GO:0030246 ... Q9HYN5 17540045
    8205 2jdp:B (1.3) BS03 CA ? GO:0030246 ... Q9HYN5 17540045
    8206 2jdp:C (1.3) BS02 CA ? GO:0030246 ... Q9HYN5 17540045
    8207 2jdp:C (1.3) BS03 CA ? GO:0030246 ... Q9HYN5 17540045
    8208 2jdp:D (1.3) BS02 CA ? GO:0030246 ... Q9HYN5 17540045
    8209 2jdp:D (1.3) BS03 CA ? GO:0030246 ... Q9HYN5 17540045
    8210 2jdu:C (1.5) BS01 CA ? GO:0030246 ... Q9HYN5 17540045
    8211 2jdu:C (1.5) BS02 CA ? GO:0030246 ... Q9HYN5 17540045
    8212 2jdu:D (1.5) BS01 CA ? GO:0030246 ... Q9HYN5 17540045
    8213 2jdu:D (1.5) BS02 CA ? GO:0030246 ... Q9HYN5 17540045
    8214 2jdy:A (1.7) BS02 CA ? GO:0030246 ... Q9HYN5 17540045
    8215 2jdy:A (1.7) BS03 CA ? GO:0030246 ... Q9HYN5 17540045
    8216 2jdy:B (1.7) BS02 CA ? GO:0030246 ... Q9HYN5 17540045
    8217 2jdy:B (1.7) BS03 CA ? GO:0030246 ... Q9HYN5 17540045
    8218 2jdy:C (1.7) BS02 CA ? GO:0030246 ... Q9HYN5 17540045
    8219 2jdy:C (1.7) BS03 CA ? GO:0030246 ... Q9HYN5 17540045
    8220 2jdy:D (1.7) BS02 CA ? GO:0030246 ... Q9HYN5 17540045
    8221 2jdy:D (1.7) BS03 CA ? GO:0030246 ... Q9HYN5 17540045
    8222 2jdz:A (2.1) BS02 CA ? GO:0005537 ... P81637 17937659
    8223 2je7:A (1.65) BS02 CA ? GO:0005537 ... P81637 17937659
    8224 2je9:A (2.1) BS01 CA ? GO:0005537 ... P08902 17937659
    8225 2je9:B (2.1) BS01 CA ? GO:0005537 ... P08902 17937659
    8226 2je9:C (2.1) BS01 CA ? GO:0005537 ... P08902 17937659
    8227 2je9:D (2.1) BS01 CA ? GO:0005537 ... P08902 17937659
    8228 2jec:A (2.0) BS01 CA ? GO:0005537 ... P08902 17937659
    8229 2jec:B (2.0) BS01 CA ? GO:0005537 ... P08902 17937659
    8230 2jec:C (2.0) BS01 CA ? GO:0005537 ... P08902 17937659
    8231 2jec:D (2.0) BS01 CA ? GO:0005537 ... P08902 17937659
    8232 2jef:A (2.17) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    8233 2jef:A (2.17) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    8234 2jef:A (2.17) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    8235 2jeg:A (2.38) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    8236 2jeg:A (2.38) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    8237 2jeg:A (2.38) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    8238 2jei:A (2.39) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    8239 2jei:A (2.39) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    8240 2jei:A (2.39) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    8241 2jej:A (1.86) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    8242 2jej:A (1.86) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    8243 2jej:A (1.86) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    8244 2jes:A (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    8245 2jes:C (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    8246 2jes:E (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    8247 2jes:G (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    8248 2jes:I (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    8249 2jes:K (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    8250 2jes:M (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    8251 2jes:O (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    8252 2jes:Q (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    8253 2jes:S (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    8254 2jes:U (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    8255 2jes:W (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    8256 2jes:Y (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    8257 2jfp:A (1.98) BS02 CA 5.1.1.3 GO:0008360 ... Q836J0 17568739
    8258 2jfp:B (1.98) BS02 CA 5.1.1.3 GO:0008360 ... Q836J0 17568739
    8259 2jg8:B (2.05) BS01 CA ? N/A P02746 18250442
    8260 2jg8:E (2.05) BS01 CA ? N/A P02746 18250442
    8261 2jg9:B (1.9) BS01 CA ? N/A P02746 18250442
    8262 2jg9:E (1.9) BS01 CA ? N/A P02746 18250442
    8263 2jh0:D (1.7) BS04 CA 3.4.21.5 GO:0004252 ... P00734 17336062
    8264 2jh5:D (2.5) BS03 CA 3.4.21.5 GO:0004252 ... P00734 17336062
    8265 2jh6:D (2.21) BS03 CA 3.4.21.5 GO:0004252 ... P00734 17336062
    8266 2jhh:C (1.7) BS01 CA ? N/A O00602 17897951
    8267 2jhh:F (1.7) BS01 CA ? N/A O00602 17897951
    8268 2jhi:F (1.8) BS01 CA ? N/A O00602 17897951
    8269 2jhk:F (1.75) BS01 CA ? N/A O00602 17897951
    8270 2jhl:F (1.75) BS01 CA ? N/A O00602 17897951
    8271 2jhm:F (1.52) BS01 CA ? N/A O00602 17897951
    8272 2ji1:C (1.7) BS02 CA 1.15.1.2 GO:0005506 ... Q46495 17446401
    8273 2ji2:C (1.7) BS02 CA 1.15.1.2 GO:0005506 ... Q46495 17446401
    8274 2jka:A (1.9) BS01 CA 3.2.1.3 GO:0000272 ... G8JZS4 18848471
    8275 2jka:B (1.9) BS01 CA 3.2.1.3 GO:0000272 ... G8JZS4 18848471
    8276 2jke:A (1.7) BS02 CA 3.2.1.3 GO:0000272 ... G8JZS4 18848471
    8277 2jke:B (1.7) BS02 CA 3.2.1.3 GO:0000272 ... G8JZS4 18848471
    8278 2jkh:A (1.25) BS02 CA 3.4.21.6 GO:0004252 ... P00742 19101972
    8279 2jkp:A (1.99) BS02 CA 3.2.1.3 GO:0000272 ... G8JZS4 18848471
    8280 2jkp:B (1.99) BS02 CA 3.2.1.3 GO:0000272 ... G8JZS4 18848471
    8281 2jkx:A (1.84) BS01 CA 1.1.3.9 GO:0005576 ... P0CS93 15239055
    8282 2jm4:A (-1.00) BS01 CA ? N/A Q9HBX9 17148455
    8283 2jnp:A (-1.00) BS03 CA 3.4.24.17 GO:0004222 ... P08254 17710450
    8284 2jnp:A (-1.00) BS04 CA 3.4.24.17 GO:0004222 ... P08254 17710450
    8285 2jnx:A (-1.00) BS01 CA ? GO:0005509 ... Q6R3G0 N/A
    8286 2jnx:A (-1.00) BS02 CA ? GO:0005509 ... Q6R3G0 N/A
    8287 2jnx:A (-1.00) BS03 CA ? GO:0005509 ... Q6R3G0 N/A
    8288 2jnx:A (-1.00) BS04 CA ? GO:0005509 ... Q6R3G0 N/A
    8289 2jq6:A (-1.00) BS01 CA ? GO:0005509 ... Q9H4M9 17899392
    8290 2jsd:A (-1.00) BS01 CA 3.4.24.- GO:0004222 ... O60882 17869250
    8291 2jsd:A (-1.00) BS02 CA 3.4.24.- GO:0004222 ... O60882 17869250
    8292 2jt5:A (-1.00) BS03 CA 3.4.24.17 GO:0004222 ... P08254 17710450
    8293 2jt5:A (-1.00) BS04 CA 3.4.24.17 GO:0004222 ... P08254 17710450
    8294 2jt6:A (-1.00) BS03 CA 3.4.24.17 GO:0004222 ... P08254 17710450
    8295 2jt6:A (-1.00) BS04 CA 3.4.24.17 GO:0004222 ... P08254 17710450
    8296 2ju0:A (-1.00) BS01 CA ? GO:0000139 ... Q06389 17720810
    8297 2ju0:A (-1.00) BS02 CA ? GO:0000139 ... Q06389 17720810
    8298 2ju0:A (-1.00) BS03 CA ? GO:0000139 ... Q06389 17720810
    8299 2jul:A (-1.00) BS01 CA ? GO:0000122 ... Q9QXT8 18201103
    8300 2jul:A (-1.00) BS02 CA ? GO:0000122 ... Q9QXT8 18201103
    8301 2jxc:A (-1.00) BS01 CA ? GO:0005509 ... P42566 18200045
    8302 2jxl:A (-1.00) BS01 CA ? GO:0005509 ... P63316 18092822
    8303 2jxy:A (-1.00) BS01 CA 3.4.24.65 N/A P39900 18465858
    8304 2jzi:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 N/A
    8305 2jzi:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 N/A
    8306 2jzi:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 N/A
    8307 2jzi:A (-1.00) BS05 CA ? GO:0000086 ... P0DP23 N/A
    8308 2k0e:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23 18462678
    8309 2k0e:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 18462678
    8310 2k0e:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 18462678
    8311 2k0e:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 18462678
    8312 2k0f:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 18462678
    8313 2k0f:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 18462678
    8314 2k0f:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 18462678
    8315 2k0f:A (-1.00) BS05 CA ? GO:0000086 ... P0DP23 18462678
    8316 2k0j:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23 19317469
    8317 2k0j:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 19317469
    8318 2k0j:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 19317469
    8319 2k1w:A (-1.00) BS01 CA ? N/A Q8TMX3 19138688
    8320 2k1w:A (-1.00) BS02 CA ? N/A Q8TMX3 19138688
    8321 2k2f:A (-1.00) BS02 CA ? GO:0000122 ... P35467 18650434
    8322 2k2f:A (-1.00) BS03 CA ? GO:0000122 ... P35467 18650434
    8323 2k2f:B (-1.00) BS02 CA ? GO:0000122 ... P35467 18650434
    8324 2k2f:B (-1.00) BS03 CA ? GO:0000122 ... P35467 18650434
    8325 2k2v:A (-1.00) BS01 CA ? N/A Q8YY42 N/A
    8326 2k2v:A (-1.00) BS02 CA ? N/A Q8YY42 N/A
    8327 2k3h:A (-1.00) BS01 CA ? GO:0016020 ... P47708 18945677
    8328 2k3h:A (-1.00) BS02 CA ? GO:0016020 ... P47708 18945677
    8329 2k60:A (-1.00) BS01 CA ? GO:0005246 ... Q13586 18854159
    8330 2k61:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23 19317469
    8331 2k61:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 19317469
    8332 2k61:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 19317469
    8333 2k7d:A (-1.00) BS01 CA ? GO:0005509 ... Q9NZU7 N/A
    8334 2k7d:A (-1.00) BS02 CA ? GO:0005509 ... Q9NZU7 N/A
    8335 2k7o:A (-1.00) BS01 CA ? GO:0001726 ... P04631 18949447
    8336 2k7o:A (-1.00) BS02 CA ? GO:0001726 ... P04631 18949447
    8337 2k7o:B (-1.00) BS01 CA ? GO:0001726 ... P04631 18949447
    8338 2k7o:B (-1.00) BS02 CA ? GO:0001726 ... P04631 18949447
    8339 2kay:A (-1.00) BS01 CA ? GO:0005507 ... P33763 19536568
    8340 2kay:A (-1.00) BS02 CA ? GO:0005507 ... P33763 19536568
    8341 2kay:B (-1.00) BS01 CA ? GO:0005507 ... P33763 19536568
    8342 2kay:B (-1.00) BS02 CA ? GO:0005507 ... P33763 19536568
    8343 2kbm:A (-1.00) BS02 CA ? GO:0000122 ... P35467 N/A
    8344 2kbm:A (-1.00) BS03 CA ? GO:0000122 ... P35467 N/A
    8345 2kbm:B (-1.00) BS02 CA ? GO:0000122 ... P35467 N/A
    8346 2kbm:B (-1.00) BS03 CA ? GO:0000122 ... P35467 N/A
    8347 2kdh:A (-1.00) BS01 CA ? GO:0005509 ... P63316 19542563
    8348 2kdh:A (-1.00) BS03 CA ? GO:0005509 ... P63316 19542563
    8349 2kdu:A (-1.00) BS01 CA ? GO:0005102 ... P0DP33 20010694
    8350 2kdu:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 20010694
    8351 2kdu:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 20010694
    8352 2kdu:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 20010694
    8353 2kff:A (-1.00) BS02 CA ? GO:0005509 ... Q9H4M9 19798736
    8354 2kfg:A (-1.00) BS02 CA ? GO:0005509 ... Q9H4M9 19798736
    8355 2kfh:A (-1.00) BS02 CA ? GO:0005509 ... Q9H4M9 19798736
    8356 2kfx:T (-1.00) BS01 CA ? GO:0005509 ... P63316 19419198
    8357 2kgb:C (-1.00) BS02 CA ? GO:0005509 ... P63316 19472326
    8358 2kid:A (-1.00) BS02 CA ? N/A Q9S446 19592495
    8359 2kmb:1 (2.0) BS03 CA ? N/A P19999 9033386
    8360 2kmb:1 (2.0) BS04 CA ? N/A P19999 9033386
    8361 2kmb:1 (2.0) BS05 CA ? N/A P19999 9033386
    8362 2kmb:2 (2.0) BS03 CA ? N/A P19999 9033386
    8363 2kmb:2 (2.0) BS04 CA ? N/A P19999 9033386
    8364 2kmb:2 (2.0) BS05 CA ? N/A P19999 9033386
    8365 2kmb:3 (2.0) BS02 CA ? N/A P19999 9033386
    8366 2kmb:3 (2.0) BS03 CA ? N/A P19999 9033386
    8367 2kmb:3 (2.0) BS04 CA ? N/A P19999 9033386
    8368 2kn2:A (-1.00) BS01 CA ? GO:0005509 ... Q39890 19667066
    8369 2kn2:A (-1.00) BS02 CA ? GO:0005509 ... Q39890 19667066
    8370 2kne:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 19996092
    8371 2kne:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 19996092
    8372 2kne:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 19996092
    8373 2kne:A (-1.00) BS05 CA ? GO:0000086 ... P0DP23 19996092
    8374 2knx:A (-1.00) BS01 CA ? N/A Q07954 20303980
    8375 2kny:A (-1.00) BS01 CA ? N/A P02649
    Q07954
    20303980
    8376 2kpn:A (-1.00) BS01 CA 3.4.24.28 GO:0005509 ... Q81D73 N/A
    8377 2krd:C (-1.00) BS02 CA ? GO:0005509 ... P63316 20116385
    8378 2kri:B (-1.00) BS01 CA ? N/A P01130 20223219
    8379 2ksp:A (-1.00) BS02 CA ? GO:0005509 ... Q9H4M9 20106972
    8380 2kug:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23 N/A
    8381 2kug:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 N/A
    8382 2kuh:A (-1.00) BS01 CA ? GO:0005509 ... P0DP23 N/A
    8383 2kuh:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 N/A
    8384 2kxv:A (-1.00) BS01 CA N/A N/A N/A 21112337
    8385 2kxv:A (-1.00) BS02 CA N/A N/A N/A 21112337
    8386 2kyf:A (-1.00) BS01 CA ? GO:0005509 ... P43305 21287610
    8387 2kyf:A (-1.00) BS02 CA ? GO:0005509 ... P43305 21287610
    8388 2kz2:A (-1.00) BS01 CA ? GO:0005509 ... P62149 21482808
    8389 2kz2:A (-1.00) BS02 CA ? GO:0005509 ... P62149 21482808
    8390 2l1r:A (-1.00) BS02 CA ? GO:0005509 ... P63316 20801130
    8391 2l1w:A (-1.00) BS02 CA ? GO:0005509 ... Q39890 N/A
    8392 2l1w:A (-1.00) BS03 CA ? GO:0005509 ... Q39890 N/A
    8393 2l1w:A (-1.00) BS04 CA ? GO:0005509 ... Q39890 N/A
    8394 2l1w:A (-1.00) BS05 CA ? GO:0005509 ... Q39890 N/A
    8395 2l4h:A (-1.00) BS01 CA ? GO:0000287 ... Q99828 21388953
    8396 2l4h:A (-1.00) BS02 CA ? GO:0000287 ... Q99828 21388953
    8397 2l51:A (-1.00) BS01 CA ? GO:0003723 ... Q96FQ6 21046186
    8398 2l51:A (-1.00) BS02 CA ? GO:0003723 ... Q96FQ6 21046186
    8399 2l51:B (-1.00) BS01 CA ? GO:0003723 ... Q96FQ6 21046186
    8400 2l51:B (-1.00) BS02 CA ? GO:0003723 ... Q96FQ6 21046186

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218