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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 1c7k:A (1.0) BS02 CA 3.4.24.77 GO:0004222 ... P56406 11132632
    602 1c8d:A (3.0) BS01 CA ? GO:0005198 ... P17455 10884355
    603 1c8f:A (3.0) BS01 CA ? GO:0005198 ... P24840 10884355
    604 1c8g:A (3.0) BS01 CA ? GO:0005198 ... P24840 10884355
    605 1c8i:A (2.0) BS02 CA 1.11.1.7 GO:0000302 ... P28313 10915789
    606 1c8i:A (2.0) BS03 CA 1.11.1.7 GO:0000302 ... P28313 10915789
    607 1c8n:A (2.25) BS01 CA ? GO:0005198 ... Q9IPS9 10864506
    608 1c8n:A (2.25) BS02 CA ? GO:0005198 ... Q9IPS9 10864506
    609 1c8n:A (2.25) BS03 CA ? GO:0005198 ... Q9IPS9 10864506
    610 1c8n:B (2.25) BS01 CA ? GO:0005198 ... Q9IPS9 10864506
    611 1c8n:B (2.25) BS02 CA ? GO:0005198 ... Q9IPS9 10864506
    612 1c8n:C (2.25) BS01 CA ? GO:0005198 ... Q9IPS9 10864506
    613 1c8n:C (2.25) BS02 CA ? GO:0005198 ... Q9IPS9 10864506
    614 1c8n:C (2.25) BS03 CA ? GO:0005198 ... Q9IPS9 10864506
    615 1c8q:A (2.3) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    616 1c8t:A (2.6) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    617 1c8t:A (2.6) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    618 1c8t:A (2.6) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    619 1c8t:B (2.6) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    620 1c8t:B (2.6) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    621 1c8t:B (2.6) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    622 1c9j:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    623 1c9j:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    624 1c9m:A (1.67) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    625 1c9m:A (1.67) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    626 1c9n:A (1.5) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    627 1c9n:A (1.5) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    628 1c9p:A (2.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 10512718
    629 1c9u:A (2.2) BS01 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    630 1c9u:A (2.2) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    631 1c9u:A (2.2) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    632 1c9u:B (2.2) BS01 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    633 1c9u:B (2.2) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    634 1c9u:B (2.2) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    635 1caq:A (1.8) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    636 1caq:A (1.8) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    637 1caq:A (1.8) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    638 1cb8:A (1.9) BS03 CA 4.2.2.5 GO:0003824 ... Q59288 10329169
    639 1cdg:A (2.0) BS06 CA 2.4.1.19 GO:0003824 ... P43379 8107143
    640 1cdg:A (2.0) BS07 CA 2.4.1.19 GO:0003824 ... P43379 8107143
    641 1cdl:A (2.0) BS02 CA ? GO:0000086 ... P0DP23 1519061
    642 1cdl:A (2.0) BS03 CA ? GO:0000086 ... P0DP23 1519061
    643 1cdl:A (2.0) BS04 CA ? GO:0000086 ... P0DP23 1519061
    644 1cdl:A (2.0) BS05 CA ? GO:0000086 ... P0DP23 1519061
    645 1cdl:B (2.0) BS02 CA ? GO:0000086 ... P0DP23 1519061
    646 1cdl:B (2.0) BS03 CA ? GO:0000086 ... P0DP23 1519061
    647 1cdl:B (2.0) BS04 CA ? GO:0000086 ... P0DP23 1519061
    648 1cdl:B (2.0) BS05 CA ? GO:0000086 ... P0DP23 1519061
    649 1cdl:C (2.0) BS03 CA ? GO:0000086 ... P0DP23 1519061
    650 1cdl:C (2.0) BS04 CA ? GO:0000086 ... P0DP23 1519061
    651 1cdl:C (2.0) BS05 CA ? GO:0000086 ... P0DP23 1519061
    652 1cdl:C (2.0) BS06 CA ? GO:0000086 ... P0DP23 1519061
    653 1cdl:D (2.0) BS02 CA ? GO:0000086 ... P0DP23 1519061
    654 1cdl:D (2.0) BS03 CA ? GO:0000086 ... P0DP23 1519061
    655 1cdl:D (2.0) BS04 CA ? GO:0000086 ... P0DP23 1519061
    656 1cdl:D (2.0) BS05 CA ? GO:0000086 ... P0DP23 1519061
    657 1cdm:A (2.0) BS02 CA ? GO:0000922 ... P62157 8259515
    658 1cdm:A (2.0) BS03 CA ? GO:0000922 ... P62157 8259515
    659 1cdm:A (2.0) BS04 CA ? GO:0000922 ... P62157 8259515
    660 1cdm:A (2.0) BS05 CA ? GO:0000922 ... P62157 8259515
    661 1ce5:A (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10651279
    662 1ceh:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 7703854
    663 1cel:A (1.8) BS02 CA 3.2.1.91 GO:0004553 ... P62694 8036495
    664 1cff:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 10493800
    665 1cff:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 10493800
    666 1cff:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 10493800
    667 1cff:A (-1.00) BS05 CA ? GO:0005102 ... P0DP33 10493800
    668 1cge:A (1.9) BS03 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    669 1cge:A (1.9) BS04 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    670 1cge:A (1.9) BS05 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    671 1cgf:A (2.1) BS03 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    672 1cgf:A (2.1) BS04 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    673 1cgf:A (2.1) BS05 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    674 1cgf:B (2.1) BS03 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    675 1cgf:B (2.1) BS04 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    676 1cgf:B (2.1) BS05 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    677 1cgl:A (2.4) BS03 CA 3.4.24.7 GO:0004222 ... P03956 8278810
    678 1cgl:B (2.4) BS04 CA 3.4.24.7 GO:0004222 ... P03956 8278810
    679 1cgt:A (2.0) BS01 CA 2.4.1.19 GO:0003824 ... P30920 1826034
    680 1cgt:A (2.0) BS02 CA 2.4.1.19 GO:0003824 ... P30920 1826034
    681 1cgu:A (2.5) BS03 CA 2.4.1.19 GO:0003824 ... P30920 1390660
    682 1cgu:A (2.5) BS04 CA 2.4.1.19 GO:0003824 ... P30920 1390660
    683 1cgv:A (2.5) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    684 1cgv:A (2.5) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    685 1cgw:A (2.5) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    686 1cgw:A (2.5) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    687 1cgx:A (2.5) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    688 1cgx:A (2.5) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    689 1cgy:A (2.5) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    690 1cgy:A (2.5) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    691 1ciu:A (2.3) BS01 CA 2.4.1.19 GO:0003824 ... P26827 8604143
    692 1ciu:A (2.3) BS02 CA 2.4.1.19 GO:0003824 ... P26827 8604143
    693 1ciw:A (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    694 1ciw:B (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    695 1ciw:C (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    696 1ciw:D (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    697 1ciz:A (1.64) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    698 1ciz:A (1.64) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    699 1ciz:A (1.64) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    700 1cjp:A (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    701 1cjp:B (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    702 1cjp:C (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    703 1cjp:D (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    704 1cjy:A (2.5) BS01 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    705 1cjy:A (2.5) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    706 1cjy:B (2.5) BS01 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    707 1cjy:B (2.5) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    708 1ck6:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 10504224
    709 1ck6:A (1.9) BS03 CA 1.11.1.7 GO:0000302 ... P28313 10504224
    710 1ck7:A (2.8) BS03 CA 3.4.24.24 GO:0001525 ... P08253 10356396
    711 1ck7:A (2.8) BS04 CA 3.4.24.24 GO:0001525 ... P08253 10356396
    712 1ck7:A (2.8) BS05 CA 3.4.24.24 GO:0001525 ... P08253 10356396
    713 1ckk:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 10467092
    714 1ckk:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 10467092
    715 1ckk:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 10467092
    716 1ckk:A (-1.00) BS05 CA ? GO:0005102 ... P0DP33 10467092
    717 1ckl:A (3.1) BS01 CA ? N/A P15529 10357804
    718 1ckl:B (3.1) BS01 CA ? N/A P15529 10357804
    719 1ckl:D (3.1) BS01 CA ? N/A P15529 10357804
    720 1ckl:E (3.1) BS01 CA ? N/A P15529 10357804
    721 1ckl:F (3.1) BS01 CA ? N/A P15529 10357804
    722 1clc:A (1.9) BS01 CA 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    723 1clc:A (1.9) BS02 CA 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    724 1clc:A (1.9) BS03 CA 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    725 1cll:A (1.7) BS01 CA ? GO:0000086 ... P0DP23 1474585
    726 1cll:A (1.7) BS02 CA ? GO:0000086 ... P0DP23 1474585
    727 1cll:A (1.7) BS03 CA ? GO:0000086 ... P0DP23 1474585
    728 1cll:A (1.7) BS04 CA ? GO:0000086 ... P0DP23 1474585
    729 1clm:A (1.8) BS01 CA ? GO:0005509 ... P07463 8453381
    730 1clm:A (1.8) BS02 CA ? GO:0005509 ... P07463 8453381
    731 1clm:A (1.8) BS03 CA ? GO:0005509 ... P07463 8453381
    732 1clm:A (1.8) BS04 CA ? GO:0005509 ... P07463 8453381
    733 1clq:A (2.7) BS03 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    734 1clq:A (2.7) BS04 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    735 1clq:A (2.7) BS05 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    736 1clq:A (2.7) BS06 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 10535734
    737 1clv:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P56634 10508777
    738 1clx:A (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    739 1clx:B (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    740 1clx:C (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    741 1clx:D (1.8) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15299710
    742 1cm1:A (2.0) BS02 CA ? GO:0000922 ... P62157 9438860
    743 1cm1:A (2.0) BS03 CA ? GO:0000922 ... P62157 9438860
    744 1cm1:A (2.0) BS04 CA ? GO:0000922 ... P62157 9438860
    745 1cm1:A (2.0) BS05 CA ? GO:0000922 ... P62157 9438860
    746 1cm1:A (2.0) BS06 CA ? GO:0000922 ... P62157 9438860
    747 1cm4:A (2.0) BS02 CA ? GO:0000922 ... P62157 9438860
    748 1cm4:A (2.0) BS03 CA ? GO:0000922 ... P62157 9438860
    749 1cm4:A (2.0) BS04 CA ? GO:0000922 ... P62157 9438860
    750 1cm4:A (2.0) BS05 CA ? GO:0000922 ... P62157 9438860
    751 1cm4:A (2.0) BS06 CA ? GO:0000922 ... P62157 9438860
    752 1cm4:A (2.0) BS07 CA ? GO:0000922 ... P62157 9438860
    753 1cm4:A (2.0) BS08 CA ? GO:0000922 ... P62157 9438860
    754 1cm4:A (2.0) BS09 CA ? GO:0000922 ... P62157 9438860
    755 1cm4:A (2.0) BS10 CA ? GO:0000922 ... P62157 9438860
    756 1cm4:A (2.0) BS11 CA ? GO:0000922 ... P62157 9438860
    757 1cm4:A (2.0) BS12 CA ? GO:0000922 ... P62157 9438860
    758 1cm4:A (2.0) BS13 CA ? GO:0000922 ... P62157 9438860
    759 1cm4:A (2.0) BS14 CA ? GO:0000922 ... P62157 9438860
    760 1cm4:A (2.0) BS15 CA ? GO:0000922 ... P62157 9438860
    761 1cm4:A (2.0) BS16 CA ? GO:0000922 ... P62157 9438860
    762 1cm4:A (2.0) BS17 CA ? GO:0000922 ... P62157 9438860
    763 1cm4:A (2.0) BS18 CA ? GO:0000922 ... P62157 9438860
    764 1cnm:A (2.2) BS01 CA 3.4.21.64 GO:0004252 ... P06873 10737944
    765 1cnm:A (2.2) BS02 CA 3.4.21.64 GO:0004252 ... P06873 10737944
    766 1co7:E (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00763 N/A
    767 1con:A (2.0) BS02 CA ? GO:0030246 ... P02866 15299493
    768 1cp7:A (1.58) BS03 CA 3.4.11.24 GO:0004177 ... P80561 10771423
    769 1cp9:B (2.5) BS01 CA ? GO:0016787 ... Q7WZI9 10548042
    770 1cpm:A (2.0) BS01 CA 3.2.1.73 GO:0004553 ... P23904 7937966
    771 1cpn:A (1.8) BS01 CA 3.2.1.73 GO:0004553 ... P23904 7937966
    772 1cpu:A (2.0) BS05 CA 3.2.1.1 GO:0003824 ... P04746 10769135
    773 1cq1:A (1.9) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    774 1cq1:A (1.9) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    775 1cq1:A (1.9) BS04 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    776 1cq1:B (1.9) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    777 1cq1:B (1.9) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    778 1cq1:B (1.9) BS04 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    779 1cq9:A (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    780 1cq9:B (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    781 1cq9:C (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    782 1cq9:D (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    783 1cqr:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    784 1cqr:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    785 1cqr:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    786 1cqr:B (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    787 1cqr:B (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    788 1cqr:B (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    789 1cr7:A (2.6) BS03 CA ? GO:0030246 ... P02872 11288176
    790 1cr7:B (2.6) BS03 CA ? GO:0030246 ... P02872 11288176
    791 1cr7:C (2.6) BS01 CA ? GO:0030246 ... P02872 11288176
    792 1cr7:D (2.6) BS01 CA ? GO:0030246 ... P02872 11288176
    793 1cr7:E (2.6) BS03 CA ? GO:0030246 ... P02872 11288176
    794 1cr7:F (2.6) BS01 CA ? GO:0030246 ... P02872 11288176
    795 1cr7:G (2.6) BS01 CA ? GO:0030246 ... P02872 11288176
    796 1cr7:H (2.6) BS01 CA ? GO:0030246 ... P02872 11288176
    797 1cr8:A (-1.00) BS01 CA ? N/A Q07954 10318830
    798 1cru:A (1.5) BS01 CA 1.1.5.2 GO:0008876 ... P13650 10518528
    799 1cru:A (1.5) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10518528
    800 1cru:A (1.5) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10518528

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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