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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7401 2fh3:B (2.87) BS01 CA ? GO:0051015 ... P06396 16466744
    7402 2fh3:B (2.87) BS02 CA ? GO:0051015 ... P06396 16466744
    7403 2fh3:B (2.87) BS03 CA ? GO:0051015 ... P06396 16466744
    7404 2fh3:C (2.87) BS01 CA ? GO:0051015 ... P06396 16466744
    7405 2fh3:C (2.87) BS02 CA ? GO:0051015 ... P06396 16466744
    7406 2fh3:C (2.87) BS03 CA ? GO:0051015 ... P06396 16466744
    7407 2fh6:A (1.8) BS02 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7408 2fh6:A (1.8) BS03 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7409 2fh6:A (1.8) BS04 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7410 2fh8:A (1.9) BS03 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7411 2fh8:A (1.9) BS04 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7412 2fh8:A (1.9) BS05 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7413 2fha:A (1.9) BS01 CA 1.16.3.1 GO:0004322 ... P02794 9159481
    7414 2fhb:A (1.8) BS05 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7415 2fhb:A (1.8) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7416 2fhb:A (1.8) BS07 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7417 2fhb:A (1.8) BS08 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7418 2fhc:A (1.85) BS08 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7419 2fhc:A (1.85) BS09 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7420 2fhc:A (1.85) BS10 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7421 2fhc:A (1.85) BS11 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7422 2fhf:A (1.65) BS08 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7423 2fhf:A (1.65) BS09 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7424 2fhf:A (1.65) BS10 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7425 2fhf:A (1.65) BS11 CA 3.2.1.41 GO:0004553 ... W9BQ28 16650854
    7426 2fi1:A (1.4) BS01 CA ? GO:0003824 ... A0A0H2UPC8 N/A
    7427 2fi3:E (1.58) BS01 CA 3.4.21.4 GO:0004175 ... P00760 18692070
    7428 2fi3:I (1.58) BS01 CA ? GO:0004867 ... P00974 18692070
    7429 2fi4:E (1.58) BS01 CA 3.4.21.4 GO:0004175 ... P00760 18692070
    7430 2fi4:I (1.58) BS01 CA ? GO:0004867 ... P00974 18692070
    7431 2fi5:E (1.58) BS01 CA 3.4.21.4 GO:0004175 ... P00760 18692070
    7432 2fi5:I (1.58) BS01 CA ? GO:0004867 ... P00974 18692070
    7433 2fib:A (2.01) BS02 CA ? GO:0007596 ... P02679 9207064
    7434 2fir:H (2.0) BS02 CA 3.4.21.21 GO:0004252 ... P08709 16757484
    7435 2fir:L (2.0) BS03 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    7436 2fir:L (2.0) BS04 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    7437 2fir:L (2.0) BS06 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    7438 2fir:L (2.0) BS07 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    7439 2fir:L (2.0) BS09 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    7440 2fju:B (2.2) BS01 CA 3.1.4.11 GO:0004435 ... Q00722 17115053
    7441 2fkc:A (2.39) BS03 CA 3.1.21.4 GO:0004519 ... Q5I6E6 16473850
    7442 2fkc:A (2.39) BS04 CA 3.1.21.4 GO:0004519 ... Q5I6E6 16473850
    7443 2fkc:B (2.39) BS03 CA 3.1.21.4 GO:0004519 ... Q5I6E6 16473850
    7444 2fkh:B (3.09) BS03 CA 3.1.21.4 GO:0004519 ... Q5I6E6 16473850
    7445 2fm1:A (2.25) BS01 CA ? GO:0005829 ... Q9X266 N/A
    7446 2fmd:A (1.9) BS03 CA ? GO:0005575 ... P42088 16567368
    7447 2fmj:A (1.65) BS01 CA 3.4.21.4 GO:0004252 ... P00775 16503653
    7448 2fn3:A (1.0) BS02 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    7449 2fnq:A (3.2) BS02 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 16162493
    7450 2fnq:A (3.2) BS03 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 16162493
    7451 2fnq:A (3.2) BS04 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 16162493
    7452 2fnq:B (3.2) BS02 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 16162493
    7453 2fnq:B (3.2) BS03 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 16162493
    7454 2fnq:B (3.2) BS04 CA 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 16162493
    7455 2fo9:A (2.0) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16488429
    7456 2foa:A (1.9) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16488429
    7457 2fob:A (1.9) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16488429
    7458 2foc:A (2.0) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16488429
    7459 2fod:A (2.0) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16488429
    7460 2foe:A (2.2) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16488429
    7461 2fof:A (2.2) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16488429
    7462 2fog:A (1.9) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16488429
    7463 2foh:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16488429
    7464 2fot:A (2.45) BS02 CA ? GO:0000922 ... P62157 16945920
    7465 2fot:A (2.45) BS03 CA ? GO:0000922 ... P62157 16945920
    7466 2fot:A (2.45) BS04 CA ? GO:0000922 ... P62157 16945920
    7467 2fot:A (2.45) BS05 CA ? GO:0000922 ... P62157 16945920
    7468 2fps:A (2.2) BS02 CA 3.1.3.15
    4.2.1.19
    GO:0000105 ... Q9S5G5 16966333
    7469 2fps:B (2.2) BS02 CA 3.1.3.15
    4.2.1.19
    GO:0000105 ... Q9S5G5 16966333
    7470 2fpw:A (1.75) BS02 CA 3.1.3.15
    4.2.1.19
    GO:0000105 ... Q9S5G5 16966333
    7471 2fpw:B (1.75) BS02 CA 3.1.3.15
    4.2.1.19
    GO:0000105 ... Q9S5G5 16966333
    7472 2fpw:B (1.75) BS03 CA 3.1.3.15
    4.2.1.19
    GO:0000105 ... Q9S5G5 16966333
    7473 2frh:A (2.5) BS01 CA ? GO:0003677 ... Q7A1N5 16455801
    7474 2frh:B (2.5) BS01 CA ? GO:0003677 ... Q7A1N5 16455801
    7475 2ftl:E (1.62) BS01 CA 3.4.21.4 GO:0004175 ... P00760 17157870
    7476 2ftl:I (1.62) BS01 CA ? GO:0004867 ... P00974 17157870
    7477 2ftm:A (1.65) BS01 CA 3.4.21.4 GO:0004175 ... P00760 17157870
    7478 2ftm:B (1.65) BS01 CA ? GO:0004867 ... P00974 17157870
    7479 2fvy:A (0.92) BS02 CA ? GO:0005509 ... P0AEE5 17473016
    7480 2fw0:A (1.55) BS01 CA ? GO:0005509 ... P0AEE5 17473016
    7481 2fwn:A (1.4) BS02 CA 4.1.1.7 GO:0000287 ... P20906 17367138
    7482 2fws:A (-1.00) BS01 CA ? GO:0007154 ... P23685 16600866
    7483 2fws:A (-1.00) BS02 CA ? GO:0007154 ... P23685 16600866
    7484 2fwu:A (-1.00) BS01 CA ? GO:0007154 ... P23685 16600866
    7485 2fwu:A (-1.00) BS02 CA ? GO:0007154 ... P23685 16600866
    7486 2fx4:A (1.65) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16681368
    7487 2fx6:A (1.57) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16681368
    7488 2fxf:A (2.0) BS01 CA 2.3.1.57 GO:0001525 ... P21673 N/A
    7489 2fxf:A (2.0) BS02 CA 2.3.1.57 GO:0001525 ... P21673 N/A
    7490 2fxf:B (2.0) BS01 CA 2.3.1.57 GO:0001525 ... P21673 N/A
    7491 2fxu:A (1.35) BS01 CA 3.6.4.- GO:0000287 ... P68135 16551075
    7492 2fxu:A (1.35) BS02 CA 3.6.4.- GO:0000287 ... P68135 16551075
    7493 2fyc:A (2.0) BS01 CA ? GO:0004461 ... P29752 16497331
    7494 2fyc:B (2.0) BS02 CA 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 16497331
    7495 2fyc:C (2.0) BS01 CA ? GO:0004461 ... P29752 16497331
    7496 2fyc:D (2.0) BS02 CA 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 16497331
    7497 2fyd:A (2.0) BS01 CA ? GO:0004461 ... P29752 16497331
    7498 2fyd:C (2.0) BS01 CA ? GO:0004461 ... P29752 16497331
    7499 2fyl:B (-1.00) BS01 CA ? N/A Q07954 16938309
    7500 2fyl:B (-1.00) BS02 CA ? N/A Q07954 16938309
    7501 2g0y:A (2.3) BS01 CA ? GO:0009579 ... B1WVN5 17075135
    7502 2g42:B (2.28) BS01 CA ? N/A Q9WZF7 N/A
    7503 2g4i:A (2.4) BS02 CA ? GO:0005515 ... P81461 17327674
    7504 2g4j:A (1.85) BS01 CA 5.3.1.5 GO:0000287 ... P24300 17327674
    7505 2g4n:A (2.3) BS01 CA ? GO:0003796 ... P00711 17327674
    7506 2g4n:B (2.3) BS01 CA ? GO:0003796 ... P00711 17327674
    7507 2g4n:C (2.3) BS01 CA ? GO:0003796 ... P00711 17327674
    7508 2g4n:D (2.3) BS01 CA ? GO:0003796 ... P00711 17327674
    7509 2g4n:E (2.3) BS01 CA ? GO:0003796 ... P00711 17327674
    7510 2g4n:F (2.3) BS01 CA ? GO:0003796 ... P00711 17327674
    7511 2g4u:A (1.84) BS01 CA 3.4.21.36 GO:0004252 ... P00772 17327674
    7512 2g4v:A (2.14) BS01 CA 3.4.21.64 GO:0004252 ... P06873 17327674
    7513 2g4v:A (2.14) BS02 CA 3.4.21.64 GO:0004252 ... P06873 17327674
    7514 2g4z:A (1.98) BS02 CA 3.4.24.27 GO:0004222 ... P00800 17327674
    7515 2g4z:A (1.98) BS03 CA 3.4.24.27 GO:0004222 ... P00800 17327674
    7516 2g4z:A (1.98) BS04 CA 3.4.24.27 GO:0004222 ... P00800 17327674
    7517 2g55:A (1.82) BS01 CA 3.4.21.4 GO:0004175 ... P00760 17327674
    7518 2g5n:A (1.51) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    7519 2g5v:A (1.45) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    7520 2g81:E (1.55) BS01 CA 3.4.21.4 GO:0004175 ... P00760 17142290
    7521 2g8e:A (2.25) BS01 CA 3.4.22.52 GO:0004198 ... P97571 16768440
    7522 2g8e:A (2.25) BS02 CA 3.4.22.52 GO:0004198 ... P97571 16768440
    7523 2g8j:A (1.61) BS01 CA 3.4.22.52 GO:0004198 ... P97571 16768440
    7524 2g8j:A (1.61) BS02 CA 3.4.22.52 GO:0004198 ... P97571 16768440
    7525 2g8k:A (1.65) BS03 CA 3.1.26.4 GO:0003676 ... Q9KEI9 16601679
    7526 2g8k:A (1.65) BS04 CA 3.1.26.4 GO:0003676 ... Q9KEI9 16601679
    7527 2g8k:A (1.65) BS05 CA 3.1.26.4 GO:0003676 ... Q9KEI9 16601679
    7528 2g8s:A (1.5) BS01 CA 1.1.5.- GO:0005509 ... P75804 16864586
    7529 2g8s:B (1.5) BS01 CA 1.1.5.- GO:0005509 ... P75804 16864586
    7530 2g8t:A (1.41) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    7531 2g8w:A (2.05) BS03 CA 3.1.26.4 GO:0003676 ... Q9KEI9 16601679
    7532 2g8w:A (2.05) BS04 CA 3.1.26.4 GO:0003676 ... Q9KEI9 16601679
    7533 2ga9:D (2.3) BS01 CA 2.7.7.19 GO:0005524 ... P23371 16678106
    7534 2ga9:D (2.3) BS02 CA 2.7.7.19 GO:0005524 ... P23371 16678106
    7535 2gbp:A (1.9) BS02 CA ? GO:0005509 ... P0AEE5 3057628
    7536 2gd4:B (3.3) BS01 CA 3.4.21.6 GO:0004252 ... P00742 16619025
    7537 2gd4:H (3.3) BS01 CA 3.4.21.6 GO:0004252 ... P00742 16619025
    7538 2gdf:B (2.4) BS02 CA ? GO:0005537 ... P08902 N/A
    7539 2gdf:D (2.4) BS02 CA ? GO:0005537 ... P08902 N/A
    7540 2ge5:A (2.4) BS03 CA 3.1.21.4 GO:0003677 ... P04390 16981705
    7541 2geb:A (1.7) BS01 CA 2.4.2.8 GO:0000166 ... Q8R7L0 17662107
    7542 2gf4:A (2.07) BS01 CA ? GO:0046872 ... Q9HQM9 N/A
    7543 2gf4:B (2.07) BS01 CA ? GO:0046872 ... Q9HQM9 N/A
    7544 2gft:A (2.3) BS04 CA 3.2.1.-
    3.2.1.89
    GO:0015926 ... Q65CX5 N/A
    7545 2gft:B (2.3) BS04 CA 3.2.1.-
    3.2.1.89
    GO:0015926 ... Q65CX5 N/A
    7546 2ggm:A (2.35) BS03 CA ? GO:0000278 ... P41208 16627479
    7547 2ggm:A (2.35) BS04 CA ? GO:0000278 ... P41208 16627479
    7548 2ggm:B (2.35) BS02 CA ? GO:0000278 ... P41208 16627479
    7549 2ggm:B (2.35) BS03 CA ? GO:0000278 ... P41208 16627479
    7550 2ggu:A (1.9) BS03 CA ? N/A P35247 16636058
    7551 2ggu:A (1.9) BS04 CA ? N/A P35247 16636058
    7552 2ggu:A (1.9) BS05 CA ? N/A P35247 16636058
    7553 2ggu:B (1.9) BS03 CA ? N/A P35247 16636058
    7554 2ggu:B (1.9) BS04 CA ? N/A P35247 16636058
    7555 2ggu:B (1.9) BS05 CA ? N/A P35247 16636058
    7556 2ggu:C (1.9) BS02 CA ? N/A P35247 16636058
    7557 2ggu:C (1.9) BS03 CA ? N/A P35247 16636058
    7558 2ggu:C (1.9) BS04 CA ? N/A P35247 16636058
    7559 2ggx:A (1.9) BS01 CA ? N/A P35247 16636058
    7560 2ggx:A (1.9) BS02 CA ? N/A P35247 16636058
    7561 2ggx:A (1.9) BS03 CA ? N/A P35247 16636058
    7562 2ggx:B (1.9) BS01 CA ? N/A P35247 16636058
    7563 2ggx:B (1.9) BS02 CA ? N/A P35247 16636058
    7564 2ggx:B (1.9) BS03 CA ? N/A P35247 16636058
    7565 2ggx:C (1.9) BS01 CA ? N/A P35247 16636058
    7566 2ggx:C (1.9) BS02 CA ? N/A P35247 16636058
    7567 2ggx:C (1.9) BS03 CA ? N/A P35247 16636058
    7568 2ggz:A (3.0) BS01 CA ? GO:0005509 ... O95843 16626734
    7569 2ggz:A (3.0) BS02 CA ? GO:0005509 ... O95843 16626734
    7570 2ggz:A (3.0) BS03 CA ? GO:0005509 ... O95843 16626734
    7571 2ggz:B (3.0) BS01 CA ? GO:0005509 ... O95843 16626734
    7572 2ggz:B (3.0) BS02 CA ? GO:0005509 ... O95843 16626734
    7573 2ggz:B (3.0) BS03 CA ? GO:0005509 ... O95843 16626734
    7574 2gih:A (2.5) BS03 CA 3.1.21.4 GO:0003677 ... P17743 16675462
    7575 2gih:B (2.5) BS03 CA 3.1.21.4 GO:0003677 ... P17743 16675462
    7576 2gij:A (1.93) BS03 CA 3.1.21.4 GO:0003677 ... P17743 16675462
    7577 2gij:B (1.93) BS03 CA 3.1.21.4 GO:0003677 ... P17743 16675462
    7578 2gjm:A (2.75) BS01 CA 1.11.1.7 GO:0004601 ... A5JUY8 N/A
    7579 2gjp:A (1.9) BS11 CA 3.2.1.98 GO:0004553 ... P19571 16946462
    7580 2gjp:A (1.9) BS12 CA 3.2.1.98 GO:0004553 ... P19571 16946462
    7581 2gjp:A (1.9) BS13 CA 3.2.1.98 GO:0004553 ... P19571 16946462
    7582 2gjr:A (2.1) BS01 CA 3.2.1.98 GO:0004553 ... P19571 16946462
    7583 2gjr:A (2.1) BS02 CA 3.2.1.98 GO:0004553 ... P19571 16946462
    7584 2gjr:A (2.1) BS03 CA 3.2.1.98 GO:0004553 ... P19571 16946462
    7585 2gko:A (1.4) BS01 CA 3.4.21.14 GO:0004252 ... Q45681 18655058
    7586 2gko:A (1.4) BS02 CA 3.4.21.14 GO:0004252 ... Q45681 18655058
    7587 2gko:A (1.4) BS03 CA 3.4.21.14 GO:0004252 ... Q45681 18655058
    7588 2gnd:A (2.25) BS04 CA ? GO:0030246 ... Q8GSD2 16824540
    7589 2gnd:B (2.25) BS02 CA ? GO:0030246 ... Q8GSD2 16824540
    7590 2gnm:A (1.95) BS02 CA ? GO:0030246 ... Q8GSD2 16824540
    7591 2gnm:B (1.95) BS01 CA ? GO:0030246 ... Q8GSD2 16824540
    7592 2gnt:A (2.02) BS01 CA ? GO:0030246 ... Q8GSD2 16824540
    7593 2gnt:A (2.02) BS02 CA ? GO:0030246 ... Q8GSD2 16824540
    7594 2gnt:B (2.02) BS01 CA ? GO:0030246 ... Q8GSD2 16824540
    7595 2gnt:B (2.02) BS02 CA ? GO:0030246 ... Q8GSD2 16824540
    7596 2gp7:A (2.45) BS01 CA ? N/A P62508 16990259
    7597 2gsk:A (2.1) BS01 CA ? GO:0005509 ... P06129 16741124
    7598 2gsk:A (2.1) BS02 CA ? GO:0005509 ... P06129 16741124
    7599 2gsm:A (2.0) BS06 CA 7.1.1.9 GO:0004129 ... P33517 17050688
    7600 2gsm:C (2.0) BS05 CA 7.1.1.9 GO:0004129 ... P33517 17050688

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218