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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6401 2aao:A (2.0) BS02 CA 2.7.11.1 GO:0005509 ... Q06850 16430916
    6402 2aao:A (2.0) BS03 CA 2.7.11.1 GO:0005509 ... Q06850 16430916
    6403 2aao:A (2.0) BS04 CA 2.7.11.1 GO:0005509 ... Q06850 16430916
    6404 2aao:B (2.0) BS01 CA 2.7.11.1 GO:0005509 ... Q06850 16430916
    6405 2aao:B (2.0) BS02 CA 2.7.11.1 GO:0005509 ... Q06850 16430916
    6406 2aao:B (2.0) BS03 CA 2.7.11.1 GO:0005509 ... Q06850 16430916
    6407 2aao:B (2.0) BS04 CA 2.7.11.1 GO:0005509 ... Q06850 16430916
    6408 2ad6:A (1.5) BS01 CA 1.1.2.7 GO:0005509 ... P38539 21356200
    6409 2ad6:C (1.5) BS01 CA 1.1.2.7 GO:0005509 ... P38539 21356200
    6410 2ad7:A (1.5) BS01 CA 1.1.2.7 GO:0005509 ... P38539 21356200
    6411 2ad7:C (1.5) BS01 CA 1.1.2.7 GO:0005509 ... P38539 21356200
    6412 2ad8:A (1.6) BS01 CA 1.1.2.7 GO:0005509 ... P38539 21356200
    6413 2ad8:C (1.6) BS01 CA 1.1.2.7 GO:0005509 ... P38539 21356200
    6414 2adj:A (2.9) BS01 CA N/A N/A N/A 16195378
    6415 2aef:A (1.7) BS01 CA ? GO:0006813 ... O27564 16227203
    6416 2aef:B (1.7) BS01 CA ? GO:0006813 ... O27564 16227203
    6417 2aei:H (2.52) BS01 CA 3.4.21.21 GO:0004252 ... P08709 16125385
    6418 2aei:L (2.52) BS01 CA 3.4.21.21 GO:0005509 ... P08709 16125385
    6419 2aei:L (2.52) BS02 CA 3.4.21.21 GO:0005509 ... P08709 16125385
    6420 2aei:L (2.52) BS03 CA 3.4.21.21 GO:0005509 ... P08709 16125385
    6421 2aei:L (2.52) BS04 CA 3.4.21.21 GO:0005509 ... P08709 16125385
    6422 2aei:L (2.52) BS05 CA 3.4.21.21 GO:0005509 ... P08709 16125385
    6423 2aei:L (2.52) BS06 CA 3.4.21.21 GO:0005509 ... P08709 16125385
    6424 2aei:L (2.52) BS07 CA 3.4.21.21 GO:0005509 ... P08709 16125385
    6425 2aep:A (2.1) BS02 CA 3.2.1.18 GO:0004308 ... Q9DL16 16384583
    6426 2aer:H (1.87) BS01 CA 3.4.21.21 GO:0004252 ... P08709 16757484
    6427 2aer:L (1.87) BS04 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    6428 2aer:L (1.87) BS05 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    6429 2aer:L (1.87) BS07 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    6430 2aer:L (1.87) BS08 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    6431 2aer:L (1.87) BS10 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    6432 2afb:A (2.05) BS01 CA ? GO:0016301 ... Q9WXS2 18004772
    6433 2afh:B (2.1) BS01 CA 1.18.6.1 GO:0005524 ... P07329 16123301
    6434 2afh:B (2.1) BS03 CA 1.18.6.1 GO:0005524 ... P07329 16123301
    6435 2afh:D (2.1) BS01 CA 1.18.6.1 GO:0005524 ... P07329 16123301
    6436 2afh:D (2.1) BS03 CA 1.18.6.1 GO:0005524 ... P07329 16123301
    6437 2afi:B (3.1) BS01 CA 1.18.6.1 GO:0005524 ... P07329 16123301
    6438 2afi:B (3.1) BS02 CA 1.18.6.1 GO:0005524 ... P07329 16123301
    6439 2afi:D (3.1) BS01 CA 1.18.6.1 GO:0005524 ... P07329 16123301
    6440 2afi:D (3.1) BS02 CA 1.18.6.1 GO:0005524 ... P07329 16123301
    6441 2afi:J (3.1) BS01 CA 1.18.6.1 GO:0005524 ... P07329 16123301
    6442 2afi:J (3.1) BS03 CA 1.18.6.1 GO:0005524 ... P07329 16123301
    6443 2afi:L (3.1) BS01 CA 1.18.6.1 GO:0005524 ... P07329 16123301
    6444 2afi:L (3.1) BS02 CA 1.18.6.1 GO:0005524 ... P07329 16123301
    6445 2aft:X (1.66) BS01 CA 1.8.3.7 N/A Q8NBK3 16368756
    6446 2aft:X (1.66) BS02 CA 1.8.3.7 N/A Q8NBK3 16368756
    6447 2afy:X (1.49) BS01 CA 1.8.3.7 N/A Q8NBK3 16368756
    6448 2afy:X (1.49) BS02 CA 1.8.3.7 N/A Q8NBK3 16368756
    6449 2age:X (1.15) BS02 CA 3.4.21.4 GO:0004175 ... P00760 16636277
    6450 2agg:X (1.28) BS02 CA 3.4.21.4 GO:0004175 ... P00760 16636277
    6451 2agi:X (1.14) BS02 CA 3.4.21.4 GO:0004175 ... P00760 16636277
    6452 2ago:A (2.85) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 16107880
    6453 2agp:A (2.9) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16107880
    6454 2agp:B (2.9) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 16107880
    6455 2agq:A (2.1) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16107880
    6456 2agq:A (2.1) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 16107880
    6457 2ah4:X (1.13) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16636277
    6458 2aig:P (2.6) BS03 CA 3.4.24.46 GO:0004222 ... P34179 9521103
    6459 2aii:X (1.54) BS01 CA 1.8.3.7 N/A Q8NBK3 16368756
    6460 2aii:X (1.54) BS02 CA 1.8.3.7 N/A Q8NBK3 16368756
    6461 2aij:X (1.55) BS02 CA 1.8.3.7 N/A Q8NBK3 16368756
    6462 2aij:X (1.55) BS03 CA 1.8.3.7 N/A Q8NBK3 16368756
    6463 2aik:X (1.73) BS02 CA 1.8.3.7 N/A Q8NBK3 16368756
    6464 2aik:X (1.73) BS03 CA 1.8.3.7 N/A Q8NBK3 16368756
    6465 2amg:A (2.0) BS01 CA 3.2.1.60 GO:0004556 ... P13507 9126844
    6466 2amg:A (2.0) BS02 CA 3.2.1.60 GO:0004556 ... P13507 9126844
    6467 2aoq:A (2.2) BS03 CA ? GO:0003677 ... P44688 16209953
    6468 2aoq:A (2.2) BS04 CA ? GO:0003677 ... P44688 16209953
    6469 2aor:A (2.0) BS03 CA ? GO:0003677 ... P44688 16209953
    6470 2aor:A (2.0) BS04 CA ? GO:0003677 ... P44688 16209953
    6471 2aor:B (2.0) BS03 CA ? GO:0003677 ... P44688 16209953
    6472 2aor:B (2.0) BS04 CA ? GO:0003677 ... P44688 16209953
    6473 2ar6:A (1.8) BS03 CA ? GO:0030246 ... Q8GSD2 16704415
    6474 2ar6:B (1.8) BS05 CA ? GO:0030246 ... Q8GSD2 16704415
    6475 2arb:A (1.8) BS03 CA ? GO:0030246 ... Q8GSD2 16704415
    6476 2arb:B (1.8) BS03 CA ? GO:0030246 ... Q8GSD2 16704415
    6477 2are:A (1.8) BS03 CA ? GO:0030246 ... Q8GSD2 16704415
    6478 2are:B (1.8) BS03 CA ? GO:0030246 ... Q8GSD2 16704415
    6479 2arh:A (2.46) BS01 CA ? N/A O67778 N/A
    6480 2arx:A (2.0) BS04 CA ? GO:0030246 ... Q8GSD2 16704415
    6481 2arx:B (2.0) BS05 CA ? GO:0030246 ... Q8GSD2 16704415
    6482 2ary:A (2.4) BS01 CA 3.4.22.52 GO:0004198 ... P07384 17157313
    6483 2ary:A (2.4) BS02 CA 3.4.22.52 GO:0004198 ... P07384 17157313
    6484 2ary:B (2.4) BS01 CA 3.4.22.52 GO:0004198 ... P07384 17157313
    6485 2ary:B (2.4) BS02 CA 3.4.22.52 GO:0004198 ... P07384 17157313
    6486 2asd:A (1.95) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6487 2asd:A (1.95) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6488 2asd:A (1.95) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6489 2asd:B (1.95) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6490 2asd:B (1.95) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6491 2asd:B (1.95) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6492 2asj:A (2.35) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6493 2asj:B (2.35) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6494 2asl:A (2.65) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6495 2asl:B (2.65) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6496 2asm:A (1.6) BS01 CA 3.6.4.- GO:0000287 ... P68135 16192358
    6497 2asp:A (1.64) BS01 CA 3.6.4.- GO:0000287 ... P68135 16192358
    6498 2atj:A (2.0) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9609699
    6499 2atj:A (2.0) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9609699
    6500 2atj:B (2.0) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9609699
    6501 2atj:B (2.0) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9609699
    6502 2atl:A (2.8) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6503 2atl:A (2.8) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6504 2atl:A (2.8) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6505 2atl:B (2.8) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6506 2atl:B (2.8) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6507 2atl:B (2.8) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6508 2au0:A (2.7) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 16379496
    6509 2auh:A (3.2) BS01 CA 2.7.10.1 GO:0004672 ... P06213 16246733
    6510 2auy:A (1.95) BS04 CA ? GO:0030246 ... Q8GSD2 16704415
    6511 2auy:B (1.95) BS04 CA ? GO:0030246 ... Q8GSD2 16704415
    6512 2axt:K (3.0) BS03 CA ? GO:0009523 ... Q9F1K9 16355230
    6513 2axt:k (3.0) BS03 CA ? GO:0009523 ... Q9F1K9 16355230
    6514 2ayh:A (1.6) BS01 CA 3.2.1.73 GO:0004553 ... P23904 7588726
    6515 2ayk:A (-1.00) BS03 CA 3.4.24.7 GO:0004222 ... P03956 9484219
    6516 2ayw:A (0.97) BS01 CA 3.4.21.4 GO:0004175 ... P00760 17372355
    6517 2az1:A (2.35) BS01 CA 2.7.4.6 GO:0004550 ... P61136 16293253
    6518 2az1:C (2.35) BS01 CA 2.7.4.6 GO:0004550 ... P61136 16293253
    6519 2az1:D (2.35) BS01 CA 2.7.4.6 GO:0004550 ... P61136 16293253
    6520 2azy:A (1.9) BS01 CA 3.1.1.4 GO:0002446 ... P00592 17434532
    6521 2azz:A (2.2) BS01 CA 3.1.1.4 GO:0002446 ... P00592 17434532
    6522 2azz:A (2.2) BS02 CA 3.1.1.4 GO:0002446 ... P00592 17434532
    6523 2b00:A (1.85) BS01 CA 3.1.1.4 GO:0002446 ... P00592 17434532
    6524 2b00:A (1.85) BS02 CA 3.1.1.4 GO:0002446 ... P00592 17434532
    6525 2b01:A (2.2) BS01 CA 3.1.1.4 GO:0002446 ... P00592 17434532
    6526 2b01:A (2.2) BS02 CA 3.1.1.4 GO:0002446 ... P00592 17434532
    6527 2b03:A (2.3) BS01 CA 3.1.1.4 GO:0002446 ... P00592 17434532
    6528 2b04:A (2.5) BS02 CA 3.1.1.4 GO:0002446 ... P00592 17434532
    6529 2b04:A (2.5) BS03 CA 3.1.1.4 GO:0002446 ... P00592 17434532
    6530 2b0d:A (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 16236314
    6531 2b0d:A (2.0) BS04 CA 3.1.21.4 GO:0003677 ... P04390 16236314
    6532 2b0e:A (1.9) BS03 CA 3.1.21.4 GO:0003677 ... P04390 16236314
    6533 2b0e:A (1.9) BS04 CA 3.1.21.4 GO:0003677 ... P04390 16236314
    6534 2b1o:A (-1.00) BS01 CA ? GO:0000331 ... P54657 17057715
    6535 2b1o:A (-1.00) BS02 CA ? GO:0000331 ... P54657 17057715
    6536 2b1o:A (-1.00) BS03 CA ? GO:0000331 ... P54657 17057715
    6537 2b30:A (2.7) BS01 CA ? GO:0000287 ... A5K063 N/A
    6538 2b30:B (2.7) BS01 CA ? GO:0000287 ... A5K063 N/A
    6539 2b30:C (2.7) BS01 CA ? GO:0000287 ... A5K063 N/A
    6540 2b30:D (2.7) BS01 CA ? GO:0000287 ... A5K063 N/A
    6541 2b33:B (2.3) BS01 CA ? GO:0005829 ... Q9WY58 N/A
    6542 2b50:A (2.0) BS01 CA ? GO:0003677 ... Q03181 16405912
    6543 2b50:B (2.0) BS03 CA ? GO:0003677 ... Q03181 16405912
    6544 2b59:B (2.11) BS01 CA ? GO:0000272 ... Q06851 16384918
    6545 2b59:B (2.11) BS02 CA ? GO:0000272 ... Q06851 16384918
    6546 2b6n:A (1.8) BS02 CA 3.4.21.- GO:0004252 ... Q3HUQ2 16367748
    6547 2b7y:A (3.0) BS03 CA ? GO:0030246 ... P02871 3775378
    6548 2b7y:C (3.0) BS03 CA ? GO:0030246 ... P02871 3775378
    6549 2b8o:H (2.8) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    6550 2b8o:L (2.8) BS02 CA 3.4.21.21 GO:0005509 ... P08709 N/A
    6551 2b8o:L (2.8) BS04 CA 3.4.21.21 GO:0005509 ... P08709 N/A
    6552 2b8o:L (2.8) BS06 CA 3.4.21.21 GO:0005509 ... P08709 N/A
    6553 2b96:A (1.7) BS01 CA 3.1.1.4 GO:0002227 ... P00593 16552140
    6554 2b96:A (1.7) BS02 CA 3.1.1.4 GO:0002227 ... P00593 16552140
    6555 2b9l:A (2.0) BS01 CA ? GO:0004252 ... Q9GRW0 16362048
    6556 2bam:A (2.0) BS03 CA 3.1.21.4 GO:0000287 ... P23940 9783752
    6557 2bam:A (2.0) BS04 CA 3.1.21.4 GO:0000287 ... P23940 9783752
    6558 2bat:A (2.0) BS02 CA 3.2.1.18 GO:0004308 ... P06820 1438172
    6559 2bax:A (1.1) BS01 CA 3.1.1.4 GO:0002227 ... P00593 16508077
    6560 2bb4:A (1.6) BS03 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    6561 2bbm:A (-1.00) BS02 CA ? GO:0005509 ... P62152 1585175
    6562 2bbm:A (-1.00) BS03 CA ? GO:0005509 ... P62152 1585175
    6563 2bbm:A (-1.00) BS04 CA ? GO:0005509 ... P62152 1585175
    6564 2bbm:A (-1.00) BS05 CA ? GO:0005509 ... P62152 1585175
    6565 2bbn:A (-1.00) BS02 CA ? GO:0005509 ... P62152 1585175
    6566 2bbn:A (-1.00) BS03 CA ? GO:0005509 ... P62152 1585175
    6567 2bbn:A (-1.00) BS04 CA ? GO:0005509 ... P62152 1585175
    6568 2bbn:A (-1.00) BS05 CA ? GO:0005509 ... P62152 1585175
    6569 2bbv:A (2.8) BS02 CA 3.4.23.44 GO:0004190 ... P04329 8289282
    6570 2bbv:B (2.8) BS02 CA 3.4.23.44 GO:0004190 ... P04329 8289282
    6571 2bbv:B (2.8) BS03 CA 3.4.23.44 GO:0004190 ... P04329 8289282
    6572 2bbv:C (2.8) BS03 CA 3.4.23.44 GO:0004190 ... P04329 8289282
    6573 2bbv:C (2.8) BS04 CA 3.4.23.44 GO:0004190 ... P04329 8289282
    6574 2bch:A (1.1) BS01 CA 3.1.1.4 GO:0002227 ... P00593 16790927
    6575 2bcx:A (2.0) BS02 CA ? GO:0005509 ... P62149 17027503
    6576 2bcx:A (2.0) BS03 CA ? GO:0005509 ... P62149 17027503
    6577 2bcx:A (2.0) BS04 CA ? GO:0005509 ... P62149 17027503
    6578 2bcx:A (2.0) BS05 CA ? GO:0005509 ... P62149 17027503
    6579 2bd1:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 16790927
    6580 2bd1:A (1.9) BS02 CA 3.1.1.4 GO:0002227 ... P00593 16790927
    6581 2bd1:B (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 16790927
    6582 2bd1:B (1.9) BS02 CA 3.1.1.4 GO:0002227 ... P00593 16790927
    6583 2bd2:A (1.7) BS03 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    6584 2bd3:A (1.6) BS03 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    6585 2bd4:A (1.7) BS03 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    6586 2bd5:A (1.8) BS03 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    6587 2bd7:A (1.6) BS04 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    6588 2bd8:A (1.7) BS04 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    6589 2bd9:A (1.9) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    6590 2bda:A (1.8) BS03 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    6591 2bdb:A (1.7) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    6592 2bdc:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16754679
    6593 2be6:A (2.0) BS02 CA ? GO:0000086 ... P0DP23 16299511
    6594 2be6:A (2.0) BS03 CA ? GO:0000086 ... P0DP23 16299511
    6595 2be6:A (2.0) BS04 CA ? GO:0000086 ... P0DP23 16299511
    6596 2be6:A (2.0) BS05 CA ? GO:0000086 ... P0DP23 16299511
    6597 2be6:B (2.0) BS02 CA ? GO:0000086 ... P0DP23 16299511
    6598 2be6:B (2.0) BS03 CA ? GO:0000086 ... P0DP23 16299511
    6599 2be6:B (2.0) BS04 CA ? GO:0000086 ... P0DP23 16299511
    6600 2be6:B (2.0) BS05 CA ? GO:0000086 ... P0DP23 16299511

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218