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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6201 1z6j:L (2.0) BS01 CA 3.4.21.21 GO:0005509 ... P08709 15913999
    6202 1z6o:A (1.91) BS01 CA ? GO:0004322 ... A0A7E5WUT2 15896348
    6203 1z6o:B (1.91) BS01 CA ? GO:0004322 ... A0A7E5WUT2 15896348
    6204 1z6o:C (1.91) BS01 CA ? GO:0004322 ... A0A7E5WUT2 15896348
    6205 1z6o:D (1.91) BS01 CA ? GO:0004322 ... A0A7E5WUT2 15896348
    6206 1z6o:E (1.91) BS01 CA ? GO:0004322 ... A0A7E5WUT2 15896348
    6207 1z6o:F (1.91) BS01 CA ? GO:0004322 ... A0A7E5WUT2 15896348
    6208 1z6o:G (1.91) BS01 CA ? GO:0004322 ... A0A7E5WUT2 15896348
    6209 1z6o:H (1.91) BS01 CA ? GO:0004322 ... A0A7E5WUT2 15896348
    6210 1z6o:I (1.91) BS01 CA ? GO:0004322 ... A0A7E5WUT2 15896348
    6211 1z6o:J (1.91) BS01 CA ? GO:0004322 ... A0A7E5WUT2 15896348
    6212 1z6o:K (1.91) BS01 CA ? GO:0004322 ... A0A7E5WUT2 15896348
    6213 1z6o:L (1.91) BS01 CA ? GO:0004322 ... A0A7E5WUT2 15896348
    6214 1z70:X (1.15) BS01 CA 1.8.3.7 N/A Q8NBK3 16041070
    6215 1z70:X (1.15) BS02 CA 1.8.3.7 N/A Q8NBK3 16041070
    6216 1z7s:1 (3.2) BS01 CA 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P22055 16004874
    6217 1z9g:E (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 2719912
    6218 1z9g:E (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 2719912
    6219 1z9g:E (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 2719912
    6220 1z9g:E (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 2719912
    6221 1zcm:A (2.0) BS01 CA 3.4.22.52 GO:0004198 ... P07384 16411745
    6222 1zcm:A (2.0) BS02 CA 3.4.22.52 GO:0004198 ... P07384 16411745
    6223 1zde:A (1.95) BS02 CA 2.7.7.7 GO:0016539 ... P74750 16219320
    6224 1zdp:E (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 2719912
    6225 1zdp:E (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 2719912
    6226 1zdp:E (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 2719912
    6227 1zdp:E (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 2719912
    6228 1zeb:A (1.9) BS04 CA 3.1.3.1 GO:0000287 ... P05187 15946677
    6229 1zed:A (1.57) BS04 CA 3.1.3.1 GO:0000287 ... P05187 15946677
    6230 1zef:A (1.9) BS06 CA 3.1.3.1 GO:0000287 ... P05187 15946677
    6231 1zfs:A (-1.00) BS01 CA ? GO:0000122 ... P35467 16169012
    6232 1zfs:A (-1.00) BS02 CA ? GO:0000122 ... P35467 16169012
    6233 1zfs:B (-1.00) BS01 CA ? GO:0000122 ... P35467 16169012
    6234 1zfs:B (-1.00) BS02 CA ? GO:0000122 ... P35467 16169012
    6235 1zh2:A (2.0) BS01 CA ? GO:0000160 ... P21866 16322582
    6236 1zh2:B (2.0) BS01 CA ? GO:0000160 ... P21866 16322582
    6237 1ziv:A (2.31) BS01 CA 3.4.22.- GO:0004198 ... O14815 17157313
    6238 1ziv:A (2.31) BS02 CA 3.4.22.- GO:0004198 ... O14815 17157313
    6239 1zja:A (1.6) BS01 CA 5.4.99.11 GO:0004556 ... Q2PS28 17597061
    6240 1zja:B (1.6) BS01 CA 5.4.99.11 GO:0004556 ... Q2PS28 17597061
    6241 1zjb:A (1.8) BS01 CA 5.4.99.11 GO:0004556 ... Q2PS28 16508103
    6242 1zjb:B (1.8) BS01 CA 5.4.99.11 GO:0004556 ... Q2PS28 16508103
    6243 1zl7:A (1.6) BS01 CA 3.1.1.4 GO:0004623 ... Q8AXY1 16376474
    6244 1zm1:A (2.3) BS04 CA 3.2.1.73 GO:0004553 ... P17989 16246371
    6245 1zm1:B (2.3) BS04 CA 3.2.1.73 GO:0004553 ... P17989 16246371
    6246 1zmr:A (2.4) BS01 CA 2.7.2.3 GO:0004618 ... P0A799 17397866
    6247 1zmr:A (2.4) BS02 CA 2.7.2.3 GO:0004618 ... P0A799 17397866
    6248 1zob:A (2.75) BS01 CA 4.1.1.64 GO:0008453 ... P16932 N/A
    6249 1zot:B (2.2) BS01 CA ? GO:0005509 ... P0DP23 16138079
    6250 1zot:B (2.2) BS02 CA ? GO:0005509 ... P0DP23 16138079
    6251 1zp5:A (1.8) BS01 CA 3.4.24.34 GO:0004222 ... P22894 16242329
    6252 1zp5:A (1.8) BS02 CA 3.4.24.34 GO:0004222 ... P22894 16242329
    6253 1zqc:A (3.2) BS03 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    6254 1zqd:A (3.5) BS03 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    6255 1zqd:A (3.5) BS04 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    6256 1zqj:A (3.3) BS03 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    6257 1zqj:A (3.3) BS04 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    6258 1zr0:A (1.802) BS01 CA 3.4.21.4 GO:0004175 ... P00760 15932872
    6259 1zr0:C (1.802) BS01 CA 3.4.21.4 GO:0004175 ... P00760 15932872
    6260 1zs0:A (1.56) BS01 CA 3.4.24.34 GO:0004222 ... P22894 16451058
    6261 1zs0:A (1.56) BS02 CA 3.4.24.34 GO:0004222 ... P22894 16451058
    6262 1ztq:A (2.0) BS03 CA 3.4.24.- GO:0004222 ... P45452 16005220
    6263 1ztq:A (2.0) BS04 CA 3.4.24.- GO:0004222 ... P45452 16005220
    6264 1ztq:A (2.0) BS05 CA 3.4.24.- GO:0004222 ... P45452 16005220
    6265 1ztq:B (2.0) BS03 CA 3.4.24.- GO:0004222 ... P45452 16005220
    6266 1ztq:B (2.0) BS04 CA 3.4.24.- GO:0004222 ... P45452 16005220
    6267 1ztq:B (2.0) BS05 CA 3.4.24.- GO:0004222 ... P45452 16005220
    6268 1ztq:C (2.0) BS03 CA 3.4.24.- GO:0004222 ... P45452 16005220
    6269 1ztq:C (2.0) BS04 CA 3.4.24.- GO:0004222 ... P45452 16005220
    6270 1ztq:C (2.0) BS05 CA 3.4.24.- GO:0004222 ... P45452 16005220
    6271 1ztq:D (2.0) BS03 CA 3.4.24.- GO:0004222 ... P45452 16005220
    6272 1ztq:D (2.0) BS04 CA 3.4.24.- GO:0004222 ... P45452 16005220
    6273 1ztq:D (2.0) BS05 CA 3.4.24.- GO:0004222 ... P45452 16005220
    6274 1zud:3 (1.98) BS02 CA 2.7.7.73 GO:0004792 ... P30138 16388576
    6275 1zuz:A (1.91) BS02 CA ? GO:0000086 ... P0DP23 N/A
    6276 1zuz:A (1.91) BS03 CA ? GO:0000086 ... P0DP23 N/A
    6277 1zuz:A (1.91) BS04 CA ? GO:0000086 ... P0DP23 N/A
    6278 1zuz:A (1.91) BS05 CA ? GO:0000086 ... P0DP23 N/A
    6279 1zvj:A (2.03) BS01 CA ? GO:0004252 ... Q8GB88 16704427
    6280 1zvk:A (2.04) BS01 CA ? GO:0004252 ... Q8GB88 16704427
    6281 1zvk:B (2.04) BS01 CA ? GO:0004252 ... Q8GB88 16704427
    6282 1zvx:A (1.87) BS01 CA 3.4.24.34 GO:0004222 ... P22894 16451058
    6283 1zvx:A (1.87) BS02 CA 3.4.24.34 GO:0004222 ... P22894 16451058
    6284 1zw6:A (1.5) BS02 CA 3.6.5.2 GO:0003924 ... P01112 16531227
    6285 1zw6:A (1.5) BS03 CA 3.6.5.2 GO:0003924 ... P01112 16531227
    6286 1zzh:A (2.7) BS01 CA N/A GO:0009055 ... N/A 16314410
    6287 1zzh:B (2.7) BS01 CA N/A GO:0009055 ... N/A 16314410
    6288 1zzh:C (2.7) BS01 CA N/A GO:0009055 ... N/A 16314410
    6289 1zzh:D (2.7) BS01 CA N/A GO:0009055 ... N/A 16314410
    6290 1zzz:A (1.9) BS02 CA 3.4.21.4 GO:0004252 ... P00760 9724521
    6291 2a11:A (2.1) BS01 CA 3.1.26.3 GO:0003723 ... P9WH03 16155207
    6292 2a2q:H (1.8) BS01 CA 3.4.21.21 GO:0004252 ... P08709 16757484
    6293 2a2q:L (1.8) BS04 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    6294 2a2q:L (1.8) BS05 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    6295 2a2q:L (1.8) BS07 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    6296 2a2q:L (1.8) BS08 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    6297 2a2q:L (1.8) BS10 CA 3.4.21.21 GO:0005509 ... P08709 16757484
    6298 2a2r:B (1.4) BS01 CA 2.5.1.18 GO:0000302 ... P09211 16597834
    6299 2a2s:B (1.7) BS01 CA 2.5.1.18 GO:0000302 ... P09211 16597834
    6300 2a31:A (1.25) BS01 CA 3.4.21.4 GO:0004252 ... P00761 16536459
    6301 2a32:A (1.5) BS01 CA 3.4.21.4 GO:0004252 ... P00761 16536459
    6302 2a3w:A (2.2) BS01 CA ? GO:0001849 ... P02743 16036920
    6303 2a3w:A (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6304 2a3w:B (2.2) BS01 CA ? GO:0001849 ... P02743 16036920
    6305 2a3w:B (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6306 2a3w:C (2.2) BS01 CA ? GO:0001849 ... P02743 16036920
    6307 2a3w:C (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6308 2a3w:D (2.2) BS01 CA ? GO:0001849 ... P02743 16036920
    6309 2a3w:D (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6310 2a3w:E (2.2) BS01 CA ? GO:0001849 ... P02743 16036920
    6311 2a3w:E (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6312 2a3w:F (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6313 2a3w:F (2.2) BS03 CA ? GO:0001849 ... P02743 16036920
    6314 2a3w:G (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6315 2a3w:G (2.2) BS03 CA ? GO:0001849 ... P02743 16036920
    6316 2a3w:H (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6317 2a3w:H (2.2) BS03 CA ? GO:0001849 ... P02743 16036920
    6318 2a3w:I (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6319 2a3w:I (2.2) BS03 CA ? GO:0001849 ... P02743 16036920
    6320 2a3w:J (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6321 2a3w:J (2.2) BS03 CA ? GO:0001849 ... P02743 16036920
    6322 2a3w:K (2.2) BS01 CA ? GO:0001849 ... P02743 16036920
    6323 2a3w:K (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6324 2a3w:L (2.2) BS01 CA ? GO:0001849 ... P02743 16036920
    6325 2a3w:L (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6326 2a3w:M (2.2) BS01 CA ? GO:0001849 ... P02743 16036920
    6327 2a3w:M (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6328 2a3w:N (2.2) BS01 CA ? GO:0001849 ... P02743 16036920
    6329 2a3w:N (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6330 2a3w:O (2.2) BS01 CA ? GO:0001849 ... P02743 16036920
    6331 2a3w:O (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6332 2a3w:P (2.2) BS01 CA ? GO:0001849 ... P02743 16036920
    6333 2a3w:P (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6334 2a3w:Q (2.2) BS01 CA ? GO:0001849 ... P02743 16036920
    6335 2a3w:Q (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6336 2a3w:R (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6337 2a3w:R (2.2) BS03 CA ? GO:0001849 ... P02743 16036920
    6338 2a3w:S (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6339 2a3w:S (2.2) BS03 CA ? GO:0001849 ... P02743 16036920
    6340 2a3w:T (2.2) BS02 CA ? GO:0001849 ... P02743 16036920
    6341 2a3w:T (2.2) BS03 CA ? GO:0001849 ... P02743 16036920
    6342 2a3x:A (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6343 2a3x:A (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6344 2a3x:B (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6345 2a3x:B (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6346 2a3x:C (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6347 2a3x:C (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6348 2a3x:D (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6349 2a3x:D (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6350 2a3x:E (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6351 2a3x:E (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6352 2a3x:F (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6353 2a3x:F (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6354 2a3x:G (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6355 2a3x:G (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6356 2a3x:H (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6357 2a3x:H (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6358 2a3x:I (3.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6359 2a3x:I (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6360 2a3x:J (3.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6361 2a3x:J (3.0) BS03 CA ? GO:0001849 ... P02743 16036920
    6362 2a3y:A (2.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6363 2a3y:A (2.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6364 2a3y:B (2.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6365 2a3y:B (2.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6366 2a3y:C (2.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6367 2a3y:C (2.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6368 2a3y:D (2.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6369 2a3y:D (2.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6370 2a3y:E (2.0) BS01 CA ? GO:0001849 ... P02743 16036920
    6371 2a3y:E (2.0) BS02 CA ? GO:0001849 ... P02743 16036920
    6372 2a3z:B (2.078) BS01 CA 3.1.21.1 GO:0002283 ... P00639 16275905
    6373 2a40:B (1.8) BS01 CA 3.1.21.1 GO:0002283 ... P00639 16275905
    6374 2a40:E (1.8) BS01 CA 3.1.21.1 GO:0002283 ... P00639 16275905
    6375 2a41:B (2.6) BS01 CA 3.1.21.1 GO:0002283 ... P00639 16275905
    6376 2a42:B (1.85) BS01 CA 3.1.21.1 GO:0002283 ... P00639 16275905
    6377 2a4e:A (3.2) BS01 CA ? GO:0005509 ... P55288 16564015
    6378 2a4e:A (3.2) BS02 CA ? GO:0005509 ... P55288 16564015
    6379 2a4e:A (3.2) BS03 CA ? GO:0005509 ... P55288 16564015
    6380 2a5x:A (2.49) BS01 CA 3.6.4.- GO:0000287 ... P68135 16141336
    6381 2a62:A (4.5) BS01 CA ? GO:0005509 ... P97291 16564015
    6382 2a62:A (4.5) BS02 CA ? GO:0005509 ... P97291 16564015
    6383 2a62:A (4.5) BS03 CA ? GO:0005509 ... P97291 16564015
    6384 2a62:A (4.5) BS04 CA ? GO:0005509 ... P97291 16564015
    6385 2a62:A (4.5) BS05 CA ? GO:0005509 ... P97291 16564015
    6386 2a62:A (4.5) BS06 CA ? GO:0005509 ... P97291 16564015
    6387 2a7a:A (1.75) BS02 CA ? GO:0005515 ... P81461 16131760
    6388 2a7g:E (1.85) BS02 CA 3.4.24.27 GO:0004222 ... P00800 16131760
    6389 2a7g:E (1.85) BS03 CA 3.4.24.27 GO:0004222 ... P00800 16131760
    6390 2a7g:E (1.85) BS04 CA 3.4.24.27 GO:0004222 ... P00800 16131760
    6391 2a7g:E (1.85) BS05 CA 3.4.24.27 GO:0004222 ... P00800 16131760
    6392 2a7h:A (2.1) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16131760
    6393 2a7j:A (1.65) BS01 CA 3.4.21.36 GO:0004252 ... P00772 16131760
    6394 2a8k:A (1.5) BS01 CA 3.1.-.- GO:0004540 ... P18000 16060658
    6395 2a8k:B (1.5) BS01 CA 3.1.-.- GO:0004540 ... P18000 16060658
    6396 2a8k:C (1.5) BS01 CA 3.1.-.- GO:0004540 ... P18000 16060658
    6397 2a8k:D (1.5) BS01 CA 3.1.-.- GO:0004540 ... P18000 16060658
    6398 2aaa:A (2.12) BS01 CA 3.2.1.1 GO:0004556 ... P56271 2207069
    6399 2aaa:A (2.12) BS02 CA 3.2.1.1 GO:0004556 ... P56271 2207069
    6400 2aao:A (2.0) BS01 CA 2.7.11.1 GO:0005509 ... Q06850 16430916

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218