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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6001 1y33:E (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    6002 1y34:E (1.55) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    6003 1y3b:E (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    6004 1y3c:E (1.69) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    6005 1y3d:E (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    6006 1y3f:E (1.72) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    6007 1y3g:E (2.1) BS01 CA 3.4.24.27 GO:0004222 ... P00800 16342943
    6008 1y3g:E (2.1) BS02 CA 3.4.24.27 GO:0004222 ... P00800 16342943
    6009 1y3g:E (2.1) BS03 CA 3.4.24.27 GO:0004222 ... P00800 16342943
    6010 1y3g:E (2.1) BS04 CA 3.4.24.27 GO:0004222 ... P00800 16342943
    6011 1y3n:A (1.6) BS03 CA ? GO:0046872 ... Q9KWT6 15794643
    6012 1y3p:A (2.0) BS04 CA ? GO:0046872 ... Q9KWT6 15794643
    6013 1y3q:A (1.9) BS01 CA ? GO:0046872 ... Q9KWT6 15794643
    6014 1y3u:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    6015 1y3v:A (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16374786
    6016 1y3w:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16374786
    6017 1y3x:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16374786
    6018 1y3y:A (1.75) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16374786
    6019 1y48:E (1.84) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    6020 1y4a:E (1.6) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    6021 1y4d:E (2.0) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    6022 1y4j:A (1.864) BS01 CA ? GO:0005515 ... Q8NBJ7 15687489
    6023 1y4j:A (1.864) BS02 CA ? GO:0005515 ... Q8NBJ7 15687489
    6024 1y4j:B (1.864) BS01 CA ? GO:0005515 ... Q8NBJ7 15687489
    6025 1y4j:B (1.864) BS02 CA ? GO:0005515 ... Q8NBJ7 15687489
    6026 1y59:T (1.2) BS01 CA 3.4.21.4 GO:0004175 ... P00760 17191291
    6027 1y5a:T (1.4) BS01 CA 3.4.21.4 GO:0004175 ... P00760 17191291
    6028 1y5b:T (1.65) BS01 CA 3.4.21.4 GO:0004175 ... P00760 17191291
    6029 1y5u:T (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 17191291
    6030 1y6o:A (2.0) BS01 CA 3.1.1.4 GO:0002446 ... P00592 15736947
    6031 1y6o:B (2.0) BS01 CA 3.1.1.4 GO:0002446 ... P00592 15736947
    6032 1y6p:A (2.25) BS01 CA 3.1.1.4 GO:0002446 ... P00592 15736947
    6033 1y6p:A (2.25) BS02 CA 3.1.1.4 GO:0002446 ... P00592 15736947
    6034 1y6p:B (2.25) BS01 CA 3.1.1.4 GO:0002446 ... P00592 15736947
    6035 1y6p:B (2.25) BS02 CA 3.1.1.4 GO:0002446 ... P00592 15736947
    6036 1y6w:A (2.4) BS01 CA ? GO:0000086 ... P0DP23 15713486
    6037 1y6w:A (2.4) BS02 CA ? GO:0000086 ... P0DP23 15713486
    6038 1y6w:A (2.4) BS03 CA ? GO:0000086 ... P0DP23 15713486
    6039 1y6w:A (2.4) BS04 CA ? GO:0000086 ... P0DP23 15713486
    6040 1y7b:A (1.6) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    6041 1y7b:B (1.6) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    6042 1y7b:C (1.6) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    6043 1y7b:D (1.6) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    6044 1y7o:A (2.51) BS01 CA 3.4.21.92 GO:0004176 ... P63788 15701650
    6045 1y7o:B (2.51) BS01 CA 3.4.21.92 GO:0004176 ... P63788 15701650
    6046 1y7o:C (2.51) BS01 CA 3.4.21.92 GO:0004176 ... P63788 15701650
    6047 1y7o:E (2.51) BS01 CA 3.4.21.92 GO:0004176 ... P63788 15701650
    6048 1y7o:F (2.51) BS01 CA 3.4.21.92 GO:0004176 ... P63788 15701650
    6049 1y7o:G (2.51) BS01 CA 3.4.21.92 GO:0004176 ... P63788 15701650
    6050 1y7u:A (2.8) BS01 CA 3.1.2.20 GO:0003677 ... Q81EE4 N/A
    6051 1y93:A (1.03) BS03 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    6052 1y93:A (1.03) BS04 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    6053 1y93:A (1.03) BS05 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    6054 1y9i:A (1.8) BS01 CA ? GO:0006629 ... Q8Y4N7 16838328
    6055 1y9i:B (1.8) BS01 CA ? GO:0006629 ... Q8Y4N7 16838328
    6056 1y9i:C (1.8) BS01 CA ? GO:0006629 ... Q8Y4N7 16838328
    6057 1y9i:D (1.8) BS01 CA ? GO:0006629 ... Q8Y4N7 16838328
    6058 1y9z:A (1.4) BS01 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    6059 1y9z:A (1.4) BS02 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    6060 1y9z:B (1.4) BS01 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    6061 1y9z:B (1.4) BS02 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    6062 1yag:G (1.9) BS01 CA ? GO:0051015 ... P06396 12732734
    6063 1yax:A (2.4) BS01 CA 2.7.13.3
    3.1.3.-
    GO:0000160 ... P0DM80 16406409
    6064 1yax:B (2.4) BS01 CA 2.7.13.3
    3.1.3.-
    GO:0000160 ... P0DM80 16406409
    6065 1yax:C (2.4) BS01 CA 2.7.13.3
    3.1.3.-
    GO:0000160 ... P0DM80 16406409
    6066 1yax:D (2.4) BS01 CA 2.7.13.3
    3.1.3.-
    GO:0000160 ... P0DM80 16406409
    6067 1ycm:A (-1.00) BS03 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    6068 1ycm:A (-1.00) BS04 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    6069 1ycm:A (-1.00) BS05 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    6070 1ydn:A (2.3) BS01 CA 4.1.3.4 GO:0003824 ... Q8YEF2 16330546
    6071 1ydn:B (2.3) BS01 CA 4.1.3.4 GO:0003824 ... Q8YEF2 16330546
    6072 1ydn:C (2.3) BS01 CA 4.1.3.4 GO:0003824 ... Q8YEF2 16330546
    6073 1ydn:D (2.3) BS01 CA 4.1.3.4 GO:0003824 ... Q8YEF2 16330546
    6074 1ydy:A (1.7) BS01 CA 3.1.4.46 GO:0006629 ... P09394 N/A
    6075 1ydy:B (1.7) BS01 CA 3.1.4.46 GO:0006629 ... P09394 N/A
    6076 1yf4:A (1.98) BS02 CA 3.4.21.4 GO:0004252 ... P00761 15854654
    6077 1yfq:A (1.1) BS01 CA ? GO:0000776 ... P26449 15644329
    6078 1yfq:A (1.1) BS02 CA ? GO:0000776 ... P26449 15644329
    6079 1ygc:H (2.0) BS01 CA 3.4.21.21 GO:0004252 ... P08709 15632123
    6080 1yi7:A (1.9) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    6081 1yi7:B (1.9) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    6082 1yi7:C (1.9) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    6083 1yi7:D (1.9) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    6084 1yii:A (1.42) BS01 CA ? GO:0001786 ... P17153 N/A
    6085 1yii:A (1.42) BS02 CA ? GO:0001786 ... P17153 N/A
    6086 1yii:A (1.42) BS03 CA ? GO:0001786 ... P17153 N/A
    6087 1yiq:A (2.2) BS01 CA 1.1.9.1 GO:0005509 ... Q4W6G0 16061256
    6088 1yja:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 10048334
    6089 1yja:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 10048334
    6090 1yjb:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 10048334
    6091 1yjb:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 10048334
    6092 1yjc:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 10048334
    6093 1yjc:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 10048334
    6094 1ykt:A (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P00763 18054043
    6095 1ylc:A (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P00763 18054043
    6096 1yld:A (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P00763 18054043
    6097 1yle:A (1.7) BS01 CA 2.3.1.109 GO:0006525 ... P80357 N/A
    6098 1yno:A (1.22) BS02 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    6099 1yo8:A (2.6) BS01 CA ? GO:0005509 ... P35442 16186819
    6100 1yo8:A (2.6) BS02 CA ? GO:0005509 ... P35442 16186819
    6101 1yo8:A (2.6) BS03 CA ? GO:0005509 ... P35442 16186819
    6102 1yo8:A (2.6) BS04 CA ? GO:0005509 ... P35442 16186819
    6103 1yo8:A (2.6) BS05 CA ? GO:0005509 ... P35442 16186819
    6104 1yo8:A (2.6) BS06 CA ? GO:0005509 ... P35442 16186819
    6105 1yo8:A (2.6) BS07 CA ? GO:0005509 ... P35442 16186819
    6106 1yo8:A (2.6) BS08 CA ? GO:0005509 ... P35442 16186819
    6107 1yo8:A (2.6) BS09 CA ? GO:0005509 ... P35442 16186819
    6108 1yo8:A (2.6) BS10 CA ? GO:0005509 ... P35442 16186819
    6109 1yo8:A (2.6) BS11 CA ? GO:0005509 ... P35442 16186819
    6110 1yo8:A (2.6) BS12 CA ? GO:0005509 ... P35442 16186819
    6111 1yo8:A (2.6) BS13 CA ? GO:0005509 ... P35442 16186819
    6112 1yo8:A (2.6) BS14 CA ? GO:0005509 ... P35442 16186819
    6113 1yo8:A (2.6) BS15 CA ? GO:0005509 ... P35442 16186819
    6114 1yo8:A (2.6) BS16 CA ? GO:0005509 ... P35442 16186819
    6115 1yo8:A (2.6) BS17 CA ? GO:0005509 ... P35442 16186819
    6116 1yo8:A (2.6) BS18 CA ? GO:0005509 ... P35442 16186819
    6117 1yo8:A (2.6) BS19 CA ? GO:0005509 ... P35442 16186819
    6118 1yo8:A (2.6) BS20 CA ? GO:0005509 ... P35442 16186819
    6119 1yo8:A (2.6) BS21 CA ? GO:0005509 ... P35442 16186819
    6120 1yo8:A (2.6) BS22 CA ? GO:0005509 ... P35442 16186819
    6121 1yo8:A (2.6) BS23 CA ? GO:0005509 ... P35442 16186819
    6122 1yo8:A (2.6) BS24 CA ? GO:0005509 ... P35442 16186819
    6123 1yo8:A (2.6) BS25 CA ? GO:0005509 ... P35442 16186819
    6124 1yo8:A (2.6) BS26 CA ? GO:0005509 ... P35442 16186819
    6125 1yo8:A (2.6) BS27 CA ? GO:0005509 ... P35442 16186819
    6126 1yo8:A (2.6) BS28 CA ? GO:0005509 ... P35442 16186819
    6127 1yo8:A (2.6) BS29 CA ? GO:0005509 ... P35442 16186819
    6128 1yo8:A (2.6) BS30 CA ? GO:0005509 ... P35442 16186819
    6129 1yoe:A (1.78) BS02 CA 3.2.-.- GO:0005509 ... P41409 N/A
    6130 1you:A (2.3) BS03 CA 3.4.24.- GO:0004222 ... P45452 15780611
    6131 1you:B (2.3) BS03 CA 3.4.24.- GO:0004222 ... P45452 15780611
    6132 1yp9:A (2.1) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16374786
    6133 1yqk:A (2.5) BS03 CA 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 15800616
    6134 1yql:A (2.6) BS03 CA 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 15800616
    6135 1yqm:A (2.5) BS03 CA 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 15800616
    6136 1yqr:A (2.43) BS03 CA 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 15800616
    6137 1yr5:A (1.7) BS02 CA ? GO:0000086 ... P0DP23 N/A
    6138 1yr5:A (1.7) BS03 CA ? GO:0000086 ... P0DP23 N/A
    6139 1yr5:A (1.7) BS04 CA ? GO:0000086 ... P0DP23 N/A
    6140 1yr5:A (1.7) BS05 CA ? GO:0000086 ... P0DP23 N/A
    6141 1yro:A (1.9) BS01 CA ? GO:0004461 ... P29752 15736931
    6142 1yro:C (1.9) BS01 CA ? GO:0004461 ... P29752 15736931
    6143 1yrt:B (2.1) BS01 CA ? GO:0005509 ... P0DP23 16138079
    6144 1yrt:B (2.1) BS02 CA ? GO:0005509 ... P0DP23 16138079
    6145 1yru:B (2.5) BS01 CA ? GO:0005509 ... P0DP23 16138079
    6146 1yru:B (2.5) BS02 CA ? GO:0005509 ... P0DP23 16138079
    6147 1ys1:X (1.1) BS01 CA 3.1.1.3 GO:0004806 ... P22088 15850979
    6148 1ys2:X (1.5) BS01 CA 3.1.1.3 GO:0004806 ... P22088 15850979
    6149 1ys6:A (1.77) BS01 CA ? GO:0000156 ... P9WGM1 N/A
    6150 1ys6:B (1.77) BS01 CA ? GO:0000156 ... P9WGM1 N/A
    6151 1ytz:C (3.0) BS01 CA ? GO:0003009 ... P02588 15784741
    6152 1ytz:C (3.0) BS02 CA ? GO:0003009 ... P02588 15784741
    6153 1ytz:C (3.0) BS03 CA ? GO:0003009 ... P02588 15784741
    6154 1ytz:C (3.0) BS04 CA ? GO:0003009 ... P02588 15784741
    6155 1yu0:A (1.56) BS01 CA ? GO:0005515 ... Q775D6 16170324
    6156 1yu6:A (1.55) BS01 CA 3.4.21.62 GO:0004252 ... P00780 15858268
    6157 1yu6:B (1.55) BS01 CA 3.4.21.62 GO:0004252 ... P00780 15858268
    6158 1yut:A (-1.00) BS01 CA ? GO:0001819 ... Q99584 16145699
    6159 1yut:A (-1.00) BS02 CA ? GO:0001819 ... Q99584 16145699
    6160 1yut:B (-1.00) BS01 CA ? GO:0001819 ... Q99584 16145699
    6161 1yut:B (-1.00) BS02 CA ? GO:0001819 ... Q99584 16145699
    6162 1yuu:A (-1.00) BS01 CA ? GO:0001819 ... Q99584 16145699
    6163 1yuu:A (-1.00) BS02 CA ? GO:0001819 ... Q99584 16145699
    6164 1yuu:B (-1.00) BS01 CA ? GO:0001819 ... Q99584 16145699
    6165 1yuu:B (-1.00) BS02 CA ? GO:0001819 ... Q99584 16145699
    6166 1yvn:G (2.1) BS01 CA ? GO:0051015 ... P06396 N/A
    6167 1yvu:A (2.9) BS01 CA 3.1.26.- GO:0003676 ... O67434 16061186
    6168 1ywt:B (2.4) BS02 CA ? GO:0000122 ... P31947 15731107
    6169 1yxh:A (1.86) BS01 CA 3.1.1.4 GO:0004623 ... Q6T179 16269164
    6170 1yxl:A (1.477) BS01 CA 3.1.1.4 GO:0004623 ... P60045 N/A
    6171 1yyd:A (1.45) BS02 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    6172 1yyd:A (1.45) BS03 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    6173 1yyg:A (1.6) BS02 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    6174 1yyg:A (1.6) BS03 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    6175 1yyg:A (1.6) BS04 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    6176 1yyy:1 (2.1) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9724521
    6177 1yzp:A (1.6) BS02 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    6178 1yzp:A (1.6) BS03 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    6179 1yzr:A (1.6) BS02 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    6180 1yzr:A (1.6) BS03 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    6181 1z0b:A (1.55) BS01 CA 3.4.21.- GO:0004176 ... O29883 16002085
    6182 1z32:X (1.6) BS04 CA 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    6183 1z3j:A (-1.00) BS03 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    6184 1z3j:A (-1.00) BS04 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    6185 1z3j:A (-1.00) BS05 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    6186 1z3s:A (2.35) BS01 CA ? N/A O15123 15893672
    6187 1z3s:B (2.35) BS01 CA ? N/A O15123 15893672
    6188 1z3u:A (2.25) BS01 CA ? N/A O15123 15893672
    6189 1z3u:B (2.25) BS01 CA ? N/A O15123 15893672
    6190 1z3u:C (2.25) BS01 CA ? N/A O15123 15893672
    6191 1z3u:D (2.25) BS01 CA ? N/A O15123 15893672
    6192 1z4v:A (2.3) BS01 CA 3.2.1.18 GO:0004308 ... P04850 15893670
    6193 1z4w:A (2.7) BS01 CA 3.2.1.18 GO:0004308 ... P04850 15893670
    6194 1z4x:A (2.5) BS02 CA 3.2.1.18 GO:0004308 ... P04850 15893670
    6195 1z4y:A (2.6) BS01 CA 3.2.1.18 GO:0004308 ... P04850 15893670
    6196 1z4z:A (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P04850 15893670
    6197 1z50:A (2.8) BS01 CA 3.2.1.18 GO:0004308 ... P04850 15893670
    6198 1z6c:A (-1.00) BS01 CA ? GO:0005509 ... P07225 15952784
    6199 1z6c:A (-1.00) BS02 CA ? GO:0005509 ... P07225 15952784
    6200 1z6j:H (2.0) BS01 CA 3.4.21.21 GO:0004252 ... P08709 15913999

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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