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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5801 1xfw:S (3.4) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5802 1xfw:S (3.4) BS03 CA ? GO:0000086 ... P0DP23 15719022
    5803 1xfw:T (3.4) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5804 1xfw:T (3.4) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5805 1xfw:T (3.4) BS03 CA ? GO:0000086 ... P0DP23 15719022
    5806 1xfx:O (3.2) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5807 1xfx:O (3.2) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5808 1xfx:O (3.2) BS03 CA ? GO:0000086 ... P0DP23 15719022
    5809 1xfx:O (3.2) BS04 CA ? GO:0000086 ... P0DP23 15719022
    5810 1xfx:P (3.2) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5811 1xfx:P (3.2) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5812 1xfx:P (3.2) BS03 CA ? GO:0000086 ... P0DP23 15719022
    5813 1xfx:P (3.2) BS04 CA ? GO:0000086 ... P0DP23 15719022
    5814 1xfx:Q (3.2) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5815 1xfx:Q (3.2) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5816 1xfx:Q (3.2) BS03 CA ? GO:0000086 ... P0DP23 15719022
    5817 1xfx:Q (3.2) BS04 CA ? GO:0000086 ... P0DP23 15719022
    5818 1xfx:R (3.2) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5819 1xfx:R (3.2) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5820 1xfx:R (3.2) BS03 CA ? GO:0000086 ... P0DP23 15719022
    5821 1xfx:R (3.2) BS04 CA ? GO:0000086 ... P0DP23 15719022
    5822 1xfx:S (3.2) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5823 1xfx:S (3.2) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5824 1xfx:S (3.2) BS03 CA ? GO:0000086 ... P0DP23 15719022
    5825 1xfx:S (3.2) BS04 CA ? GO:0000086 ... P0DP23 15719022
    5826 1xfx:T (3.2) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5827 1xfx:T (3.2) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5828 1xfx:T (3.2) BS03 CA ? GO:0000086 ... P0DP23 15719022
    5829 1xfx:T (3.2) BS04 CA ? GO:0000086 ... P0DP23 15719022
    5830 1xfy:O (3.3) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5831 1xfy:O (3.3) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5832 1xfy:P (3.3) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5833 1xfy:P (3.3) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5834 1xfy:Q (3.3) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5835 1xfy:Q (3.3) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5836 1xfy:R (3.3) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5837 1xfy:R (3.3) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5838 1xfy:S (3.3) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5839 1xfy:S (3.3) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5840 1xfy:T (3.3) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5841 1xfy:T (3.3) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5842 1xfz:O (3.25) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5843 1xfz:O (3.25) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5844 1xfz:O (3.25) BS03 CA ? GO:0000086 ... P0DP23 15719022
    5845 1xfz:P (3.25) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5846 1xfz:P (3.25) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5847 1xfz:P (3.25) BS03 CA ? GO:0000086 ... P0DP23 15719022
    5848 1xfz:Q (3.25) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5849 1xfz:Q (3.25) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5850 1xfz:Q (3.25) BS03 CA ? GO:0000086 ... P0DP23 15719022
    5851 1xfz:R (3.25) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5852 1xfz:R (3.25) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5853 1xfz:R (3.25) BS03 CA ? GO:0000086 ... P0DP23 15719022
    5854 1xfz:S (3.25) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5855 1xfz:S (3.25) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5856 1xfz:S (3.25) BS03 CA ? GO:0000086 ... P0DP23 15719022
    5857 1xfz:T (3.25) BS01 CA ? GO:0000086 ... P0DP23 15719022
    5858 1xfz:T (3.25) BS02 CA ? GO:0000086 ... P0DP23 15719022
    5859 1xfz:T (3.25) BS03 CA ? GO:0000086 ... P0DP23 15719022
    5860 1xgz:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P04746 15722449
    5861 1xh1:A (2.03) BS01 CA 3.2.1.1 GO:0003824 ... P04746 15722449
    5862 1xh2:A (2.2) BS02 CA 3.2.1.1 GO:0003824 ... P04746 15722449
    5863 1xhb:A (2.5) BS02 CA 2.4.1.41 N/A O08912 15486088
    5864 1xjl:A (2.59) BS01 CA ? GO:0001525 ... P07355 N/A
    5865 1xjl:A (2.59) BS02 CA ? GO:0001525 ... P07355 N/A
    5866 1xjl:A (2.59) BS03 CA ? GO:0001525 ... P07355 N/A
    5867 1xjl:A (2.59) BS04 CA ? GO:0001525 ... P07355 N/A
    5868 1xjl:A (2.59) BS05 CA ? GO:0001525 ... P07355 N/A
    5869 1xjl:A (2.59) BS06 CA ? GO:0001525 ... P07355 N/A
    5870 1xjl:A (2.59) BS07 CA ? GO:0001525 ... P07355 N/A
    5871 1xjl:B (2.59) BS01 CA ? GO:0001525 ... P07355 N/A
    5872 1xjl:B (2.59) BS02 CA ? GO:0001525 ... P07355 N/A
    5873 1xjl:B (2.59) BS03 CA ? GO:0001525 ... P07355 N/A
    5874 1xjl:B (2.59) BS04 CA ? GO:0001525 ... P07355 N/A
    5875 1xjl:B (2.59) BS05 CA ? GO:0001525 ... P07355 N/A
    5876 1xjl:B (2.59) BS06 CA ? GO:0001525 ... P07355 N/A
    5877 1xjl:B (2.59) BS07 CA ? GO:0001525 ... P07355 N/A
    5878 1xjo:A (1.75) BS04 CA 3.4.11.24 GO:0004177 ... P80561 9048953
    5879 1xk4:A (1.8) BS01 CA ? GO:0002523 ... P05109 17553524
    5880 1xk4:A (1.8) BS02 CA ? GO:0002523 ... P05109 17553524
    5881 1xk4:B (1.8) BS01 CA ? GO:0002523 ... P05109 17553524
    5882 1xk4:B (1.8) BS02 CA ? GO:0002523 ... P05109 17553524
    5883 1xk4:C (1.8) BS01 CA ? GO:0002523 ... P06702 17553524
    5884 1xk4:C (1.8) BS02 CA ? GO:0002523 ... P06702 17553524
    5885 1xk4:D (1.8) BS01 CA ? GO:0002523 ... P06702 17553524
    5886 1xk4:D (1.8) BS02 CA ? GO:0002523 ... P06702 17553524
    5887 1xk4:E (1.8) BS01 CA ? GO:0002523 ... P05109 17553524
    5888 1xk4:E (1.8) BS02 CA ? GO:0002523 ... P05109 17553524
    5889 1xk4:F (1.8) BS01 CA ? GO:0002523 ... P05109 17553524
    5890 1xk4:F (1.8) BS02 CA ? GO:0002523 ... P05109 17553524
    5891 1xk4:G (1.8) BS01 CA ? GO:0002523 ... P06702 17553524
    5892 1xk4:G (1.8) BS02 CA ? GO:0002523 ... P06702 17553524
    5893 1xk4:H (1.8) BS01 CA ? GO:0002523 ... P06702 17553524
    5894 1xk4:H (1.8) BS02 CA ? GO:0002523 ... P06702 17553524
    5895 1xk4:I (1.8) BS01 CA ? GO:0002523 ... P05109 17553524
    5896 1xk4:I (1.8) BS02 CA ? GO:0002523 ... P05109 17553524
    5897 1xk4:J (1.8) BS01 CA ? GO:0002523 ... P05109 17553524
    5898 1xk4:J (1.8) BS02 CA ? GO:0002523 ... P05109 17553524
    5899 1xk4:K (1.8) BS01 CA ? GO:0002523 ... P06702 17553524
    5900 1xk4:K (1.8) BS02 CA ? GO:0002523 ... P06702 17553524
    5901 1xk4:L (1.8) BS01 CA ? GO:0002523 ... P06702 17553524
    5902 1xk4:L (1.8) BS02 CA ? GO:0002523 ... P06702 17553524
    5903 1xka:C (2.3) BS01 CA 3.4.21.6 GO:0004252 ... P00742 9618463
    5904 1xkb:A (2.4) BS01 CA 3.4.21.6 GO:0005509 ... P00742 9618463
    5905 1xkb:C (2.4) BS01 CA 3.4.21.6 GO:0004252 ... P00742 9618463
    5906 1xkb:D (2.4) BS01 CA 3.4.21.6 GO:0004252 ... P00742 9618463
    5907 1xkd:A (2.3) BS01 CA 1.1.1.42 GO:0000166 ... Q9YE81 15581899
    5908 1xkv:A (2.2) BS01 CA 4.1.1.49 GO:0004611 ... Q5SLL5 16239727
    5909 1xkv:B (2.2) BS01 CA 4.1.1.49 GO:0004611 ... Q5SLL5 16239727
    5910 1xmf:C (2.32) BS01 CA 1.14.13.25 GO:0004497 ... P18798 15610020
    5911 1xo5:A (1.99) BS01 CA ? GO:0000287 ... Q99828 15574431
    5912 1xo5:A (1.99) BS02 CA ? GO:0000287 ... Q99828 15574431
    5913 1xo5:A (1.99) BS03 CA ? GO:0000287 ... Q99828 15574431
    5914 1xo5:B (1.99) BS01 CA ? GO:0000287 ... Q99828 15574431
    5915 1xo5:B (1.99) BS02 CA ? GO:0000287 ... Q99828 15574431
    5916 1xo5:B (1.99) BS03 CA ? GO:0000287 ... Q99828 15574431
    5917 1xph:A (1.41) BS01 CA ? N/A Q9H2X3 15784257
    5918 1xqn:A (2.5) BS02 CA ? N/A P02866 15546977
    5919 1xuc:A (1.7) BS03 CA 3.4.24.- GO:0004222 ... P45452 15734645
    5920 1xuc:A (1.7) BS04 CA 3.4.24.- GO:0004222 ... P45452 15734645
    5921 1xuc:B (1.7) BS03 CA 3.4.24.- GO:0004222 ... P45452 15734645
    5922 1xuc:B (1.7) BS04 CA 3.4.24.- GO:0004222 ... P45452 15734645
    5923 1xud:A (1.8) BS03 CA 3.4.24.- GO:0004222 ... P45452 15734640
    5924 1xud:A (1.8) BS04 CA 3.4.24.- GO:0004222 ... P45452 15734640
    5925 1xud:B (1.8) BS03 CA 3.4.24.- GO:0004222 ... P45452 15734640
    5926 1xud:B (1.8) BS04 CA 3.4.24.- GO:0004222 ... P45452 15734640
    5927 1xuf:A (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    5928 1xug:A (1.5) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    5929 1xuh:A (2.2) BS02 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    5930 1xui:A (1.5) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142 Manual survey: Ki=19uM (9468142)
    5931 1xuj:A (1.92) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    5932 1xuk:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    5933 1xur:A (1.85) BS03 CA 3.4.24.- GO:0004222 ... P45452 15734640
    5934 1xur:A (1.85) BS04 CA 3.4.24.- GO:0004222 ... P45452 15734640
    5935 1xur:B (1.85) BS03 CA 3.4.24.- GO:0004222 ... P45452 15734640
    5936 1xur:B (1.85) BS04 CA 3.4.24.- GO:0004222 ... P45452 15734640
    5937 1xv8:A (3.0) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    5938 1xv8:B (3.0) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    5939 1xvg:C (1.96) BS02 CA 1.14.13.25 GO:0004497 ... P18798 15839679
    5940 1xvj:A (1.8) BS01 CA ? GO:0005509 ... P02625 16101280
    5941 1xvj:A (1.8) BS02 CA ? GO:0005509 ... P02625 16101280
    5942 1xvj:B (1.8) BS01 CA ? GO:0005509 ... P02625 16101280
    5943 1xvj:B (1.8) BS02 CA ? GO:0005509 ... P02625 16101280
    5944 1xxm:D (1.9) BS01 CA ? GO:0005515 ... P35804 15618400
    5945 1xyd:A (-1.00) BS01 CA ? GO:0001726 ... P04631 15823027
    5946 1xyd:A (-1.00) BS02 CA ? GO:0001726 ... P04631 15823027
    5947 1xyd:B (-1.00) BS02 CA ? GO:0001726 ... P04631 15823027
    5948 1xyd:B (-1.00) BS03 CA ? GO:0001726 ... P04631 15823027
    5949 1xyn:A (2.0) BS01 CA 3.2.1.8 GO:0004553 ... P36218 7827044
    5950 1xzo:A (1.702) BS01 CA ? GO:0005886 ... P54178 15723536
    5951 1xzo:A (1.702) BS02 CA ? GO:0005886 ... P54178 15723536
    5952 1xzo:A (1.702) BS03 CA ? GO:0005886 ... P54178 15723536
    5953 1xzo:B (1.702) BS01 CA ? GO:0005886 ... P54178 15723536
    5954 1xzo:B (1.702) BS02 CA ? GO:0005886 ... P54178 15723536
    5955 1xzo:B (1.702) BS03 CA ? GO:0005886 ... P54178 15723536
    5956 1y0v:H (3.6) BS01 CA ? GO:0005102 ... P0DP33 15719022
    5957 1y0v:H (3.6) BS02 CA ? GO:0005102 ... P0DP33 15719022
    5958 1y0v:H (3.6) BS03 CA ? GO:0005102 ... P0DP33 15719022
    5959 1y0v:I (3.6) BS01 CA ? GO:0005102 ... P0DP33 15719022
    5960 1y0v:I (3.6) BS02 CA ? GO:0005102 ... P0DP33 15719022
    5961 1y0v:I (3.6) BS03 CA ? GO:0005102 ... P0DP33 15719022
    5962 1y0v:J (3.6) BS01 CA ? GO:0005102 ... P0DP33 15719022
    5963 1y0v:J (3.6) BS02 CA ? GO:0005102 ... P0DP33 15719022
    5964 1y0v:J (3.6) BS03 CA ? GO:0005102 ... P0DP33 15719022
    5965 1y0v:K (3.6) BS01 CA ? GO:0005102 ... P0DP33 15719022
    5966 1y0v:K (3.6) BS02 CA ? GO:0005102 ... P0DP33 15719022
    5967 1y0v:K (3.6) BS03 CA ? GO:0005102 ... P0DP33 15719022
    5968 1y0v:L (3.6) BS01 CA ? GO:0005102 ... P0DP33 15719022
    5969 1y0v:L (3.6) BS02 CA ? GO:0005102 ... P0DP33 15719022
    5970 1y0v:L (3.6) BS03 CA ? GO:0005102 ... P0DP33 15719022
    5971 1y0v:M (3.6) BS01 CA ? GO:0005102 ... P0DP33 15719022
    5972 1y0v:M (3.6) BS02 CA ? GO:0005102 ... P0DP33 15719022
    5973 1y0v:M (3.6) BS03 CA ? GO:0005102 ... P0DP33 15719022
    5974 1y10:A (2.3) BS01 CA 4.6.1.1 GO:0004016 ... P9WMU9 15890882
    5975 1y10:B (2.3) BS01 CA 4.6.1.1 GO:0004016 ... P9WMU9 15890882
    5976 1y10:C (2.3) BS01 CA 4.6.1.1 GO:0004016 ... P9WMU9 15890882
    5977 1y10:D (2.3) BS01 CA 4.6.1.1 GO:0004016 ... P9WMU9 15890882
    5978 1y17:A (2.4) BS01 CA ? GO:0005576 ... Q9DEF9 N/A
    5979 1y17:B (2.4) BS01 CA ? GO:0005576 ... Q9DEF8 N/A
    5980 1y1a:A (2.3) BS01 CA ? GO:0000287 ... Q99828 15840829
    5981 1y1a:A (2.3) BS02 CA ? GO:0000287 ... Q99828 15840829
    5982 1y1a:A (2.3) BS03 CA ? GO:0000287 ... Q99828 15840829
    5983 1y1a:B (2.3) BS01 CA ? GO:0000287 ... Q99828 15840829
    5984 1y1a:B (2.3) BS02 CA ? GO:0000287 ... Q99828 15840829
    5985 1y1a:B (2.3) BS03 CA ? GO:0000287 ... Q99828 15840829
    5986 1y1e:X (1.73) BS01 CA 1.8.3.7 N/A Q8NBK3 15907468
    5987 1y1e:X (1.73) BS02 CA 1.8.3.7 N/A Q8NBK3 15907468
    5988 1y1f:X (1.8) BS01 CA 1.8.3.7 N/A Q8NBK3 15907468
    5989 1y1f:X (1.8) BS02 CA 1.8.3.7 N/A Q8NBK3 15907468
    5990 1y1g:X (1.67) BS01 CA 1.8.3.7 N/A Q8NBK3 15907468
    5991 1y1g:X (1.67) BS02 CA 1.8.3.7 N/A Q8NBK3 15907468
    5992 1y1i:X (2.61) BS01 CA 1.8.3.7 N/A Q8NBK3 15907468
    5993 1y1i:X (2.61) BS02 CA 1.8.3.7 N/A Q8NBK3 15907468
    5994 1y1j:X (1.55) BS01 CA 1.8.3.7 N/A Q8NBK3 15907468
    5995 1y1j:X (1.55) BS02 CA 1.8.3.7 N/A Q8NBK3 15907468
    5996 1y1k:E (1.56) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    5997 1y1x:A (1.95) BS01 CA ? GO:0005509 ... Q4QG08 N/A
    5998 1y1x:A (1.95) BS02 CA ? GO:0005509 ... Q4QG08 N/A
    5999 1y1x:B (1.95) BS01 CA ? GO:0005509 ... Q4QG08 N/A
    6000 1y1x:B (1.95) BS02 CA ? GO:0005509 ... Q4QG08 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218