Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5201 1utn:A (1.15) BS03 CA 3.4.21.4 GO:0004252 ... P00760 15044735
    5202 1uto:A (1.15) BS02 CA 3.4.21.4 GO:0004252 ... P00760 15044735
    5203 1utp:A (1.3) BS02 CA 3.4.21.4 GO:0004252 ... P00760 15044735
    5204 1utq:A (1.15) BS01 CA 3.4.21.4 GO:0004252 ... P00760 15044735
    5205 1utt:A (2.2) BS04 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    5206 1utt:A (2.2) BS05 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    5207 1utt:A (2.2) BS06 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    5208 1utz:A (2.5) BS05 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    5209 1utz:A (2.5) BS06 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    5210 1utz:B (2.5) BS05 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    5211 1utz:B (2.5) BS06 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    5212 1uv4:A (1.5) BS01 CA 3.2.1.99 GO:0004553 ... P94522 15708971
    5213 1uvn:A (3.0) BS04 CA 2.7.7.48 GO:0000166 ... P11124 14962391
    5214 1uvn:C (3.0) BS04 CA 2.7.7.48 GO:0000166 ... P11124 14962391
    5215 1uvn:E (3.0) BS04 CA 2.7.7.48 GO:0000166 ... P11124 14962391
    5216 1uww:A (1.4) BS01 CA 3.2.1.4 GO:0008810 ... P06564 15136030
    5217 1uww:A (1.4) BS02 CA 3.2.1.4 GO:0008810 ... P06564 15136030
    5218 1uww:A (1.4) BS03 CA 3.2.1.4 GO:0008810 ... P06564 15136030
    5219 1uww:B (1.4) BS01 CA 3.2.1.4 GO:0008810 ... P06564 15136030
    5220 1uww:B (1.4) BS02 CA 3.2.1.4 GO:0008810 ... P06564 15136030
    5221 1ux6:A (1.9) BS01 CA ? GO:0005509 ... P07996 15014436
    5222 1ux6:A (1.9) BS02 CA ? GO:0005509 ... P07996 15014436
    5223 1ux6:A (1.9) BS03 CA ? GO:0005509 ... P07996 15014436
    5224 1ux6:A (1.9) BS04 CA ? GO:0005509 ... P07996 15014436
    5225 1ux6:A (1.9) BS05 CA ? GO:0005509 ... P07996 15014436
    5226 1ux6:A (1.9) BS06 CA ? GO:0005509 ... P07996 15014436
    5227 1ux6:A (1.9) BS07 CA ? GO:0005509 ... P07996 15014436
    5228 1ux6:A (1.9) BS08 CA ? GO:0005509 ... P07996 15014436
    5229 1ux6:A (1.9) BS09 CA ? GO:0005509 ... P07996 15014436
    5230 1ux6:A (1.9) BS10 CA ? GO:0005509 ... P07996 15014436
    5231 1ux6:A (1.9) BS11 CA ? GO:0005509 ... P07996 15014436
    5232 1ux6:A (1.9) BS12 CA ? GO:0005509 ... P07996 15014436
    5233 1ux6:A (1.9) BS13 CA ? GO:0005509 ... P07996 15014436
    5234 1ux6:A (1.9) BS14 CA ? GO:0005509 ... P07996 15014436
    5235 1ux6:A (1.9) BS15 CA ? GO:0005509 ... P07996 15014436
    5236 1ux6:A (1.9) BS16 CA ? GO:0005509 ... P07996 15014436
    5237 1ux7:A (1.5) BS03 CA 3.2.1.55 GO:0030246 ... P45796 15242594
    5238 1ux7:A (1.5) BS04 CA 3.2.1.55 GO:0030246 ... P45796 15242594
    5239 1uxx:X (1.6) BS06 CA 3.2.1.8 GO:0030246 ... O52780 15010454
    5240 1uy0:A (1.65) BS03 CA ? GO:0030246 ... O07653 15010454
    5241 1uy0:A (1.65) BS04 CA ? GO:0030246 ... O07653 15010454
    5242 1uy0:B (1.65) BS04 CA ? GO:0030246 ... O07653 15010454
    5243 1uy0:B (1.65) BS05 CA ? GO:0030246 ... O07653 15010454
    5244 1uy1:A (1.8) BS01 CA 3.2.1.8 GO:0030246 ... Q8GJ44 15223327
    5245 1uy2:A (1.7) BS02 CA 3.2.1.8 GO:0030246 ... Q8GJ44 15223327
    5246 1uy3:A (1.89) BS04 CA 3.2.1.8 GO:0030246 ... Q8GJ44 15223327
    5247 1uy4:A (1.69) BS04 CA 3.2.1.8 GO:0030246 ... Q8GJ44 15223327
    5248 1uyx:A (1.47) BS04 CA ? GO:0030246 ... O07653 15010454
    5249 1uyx:A (1.47) BS05 CA ? GO:0030246 ... O07653 15010454
    5250 1uyx:B (1.47) BS04 CA ? GO:0030246 ... O07653 15010454
    5251 1uyx:B (1.47) BS05 CA ? GO:0030246 ... O07653 15010454
    5252 1uyy:A (1.47) BS03 CA ? GO:0030246 ... O07653 15010454
    5253 1uyy:A (1.47) BS04 CA ? GO:0030246 ... O07653 15010454
    5254 1uyy:B (1.47) BS04 CA ? GO:0030246 ... O07653 15010454
    5255 1uyy:B (1.47) BS05 CA ? GO:0030246 ... O07653 15010454
    5256 1uyz:A (1.6) BS02 CA ? GO:0030246 ... O07653 15010454
    5257 1uyz:A (1.6) BS03 CA ? GO:0030246 ... O07653 15010454
    5258 1uyz:B (1.6) BS02 CA ? GO:0030246 ... O07653 15010454
    5259 1uyz:B (1.6) BS03 CA ? GO:0030246 ... O07653 15010454
    5260 1uz0:A (2.0) BS04 CA ? GO:0030246 ... O07653 15010454
    5261 1uz0:A (2.0) BS05 CA ? GO:0030246 ... O07653 15010454
    5262 1uzj:A (2.25) BS01 CA ? GO:0005509 ... P35555 15062093
    5263 1uzj:A (2.25) BS02 CA ? GO:0005509 ... P35555 15062093
    5264 1uzj:B (2.25) BS01 CA ? GO:0005509 ... P35555 15062093
    5265 1uzj:B (2.25) BS02 CA ? GO:0005509 ... P35555 15062093
    5266 1uzj:C (2.25) BS01 CA ? GO:0005509 ... P35555 15062093
    5267 1uzj:C (2.25) BS02 CA ? GO:0005509 ... P35555 15062093
    5268 1uzk:A (1.35) BS01 CA ? GO:0005509 ... P35555 15062093
    5269 1uzv:A (1.0) BS01 CA ? GO:0030246 ... Q9HYN5 15573375
    5270 1uzv:A (1.0) BS02 CA ? GO:0030246 ... Q9HYN5 15573375
    5271 1uzv:B (1.0) BS01 CA ? GO:0030246 ... Q9HYN5 15573375
    5272 1uzv:B (1.0) BS02 CA ? GO:0030246 ... Q9HYN5 15573375
    5273 1uzv:C (1.0) BS01 CA ? GO:0030246 ... Q9HYN5 15573375
    5274 1uzv:C (1.0) BS02 CA ? GO:0030246 ... Q9HYN5 15573375
    5275 1uzv:D (1.0) BS01 CA ? GO:0030246 ... Q9HYN5 15573375
    5276 1uzv:D (1.0) BS02 CA ? GO:0030246 ... Q9HYN5 15573375
    5277 1uzy:A (2.0) BS03 CA ? GO:0030246 ... Q6YD91 15201215
    5278 1uzy:B (2.0) BS03 CA ? GO:0030246 ... Q6YD91 15201215
    5279 1uzz:A (2.13) BS01 CA ? GO:0030246 ... Q6YD91 15201215
    5280 1uzz:B (2.13) BS01 CA ? GO:0030246 ... Q6YD91 15201215
    5281 1uzz:C (2.13) BS01 CA ? GO:0030246 ... Q6YD91 15201215
    5282 1uzz:D (2.13) BS01 CA ? GO:0030246 ... Q6YD91 15201215
    5283 1v00:A (1.7) BS04 CA ? GO:0030246 ... Q6YD91 15201215
    5284 1v00:B (1.7) BS04 CA ? GO:0030246 ... Q6YD91 15201215
    5285 1v00:C (1.7) BS04 CA ? GO:0030246 ... Q6YD91 15201215
    5286 1v00:D (1.7) BS04 CA ? GO:0030246 ... Q6YD91 15201215
    5287 1v04:A (2.2) BS01 CA 3.1.1.2
    3.1.1.81
    3.1.8.1
    GO:0004063 ... P27170 15098021
    5288 1v04:A (2.2) BS02 CA 3.1.1.2
    3.1.1.81
    3.1.8.1
    GO:0004063 ... P27170 15098021
    5289 1v0a:A (1.98) BS01 CA 3.2.1.4 GO:0008810 ... P16218 15192099
    5290 1v0a:A (1.98) BS02 CA 3.2.1.4 GO:0008810 ... P16218 15192099
    5291 1v0c:A (2.2) BS03 CA 2.3.1.82 GO:0016410 ... Q6SJ71 18710261
    5292 1v0z:A (1.84) BS03 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    5293 1v0z:B (1.84) BS02 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    5294 1v0z:C (1.84) BS05 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    5295 1v0z:D (1.84) BS02 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    5296 1v1f:A (3.0) BS01 CA ? GO:0004723 ... O81223 15644219
    5297 1v1f:A (3.0) BS02 CA ? GO:0004723 ... O81223 15644219
    5298 1v1f:A (3.0) BS03 CA ? GO:0004723 ... O81223 15644219
    5299 1v1g:A (2.7) BS01 CA ? GO:0004723 ... O81223 15644219
    5300 1v1g:A (2.7) BS02 CA ? GO:0004723 ... O81223 15644219
    5301 1v1g:A (2.7) BS03 CA ? GO:0004723 ... O81223 15644219
    5302 1v1g:A (2.7) BS04 CA ? GO:0004723 ... O81223 15644219
    5303 1v2i:A (2.2) BS01 CA 3.2.1.18 GO:0004308 ... Q6WJ03 14729348
    5304 1v2i:B (2.2) BS01 CA 3.2.1.18 GO:0004308 ... Q6WJ03 14729348
    5305 1v2j:T (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14729347
    5306 1v2k:T (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14729347
    5307 1v2l:T (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14729347
    5308 1v2n:T (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14729347
    5309 1v2o:T (1.62) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14729347
    5310 1v2p:T (1.92) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14729347
    5311 1v2q:T (2.3) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14729347
    5312 1v2r:T (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14729347
    5313 1v2s:T (1.72) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14729347
    5314 1v2t:T (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14729347
    5315 1v2u:T (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14729347
    5316 1v2v:T (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14729347
    5317 1v2w:T (1.75) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14729347
    5318 1v3b:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... Q6WJ03 14729348
    5319 1v3b:B (2.0) BS01 CA 3.2.1.18 GO:0004308 ... Q6WJ03 14729348
    5320 1v3c:A (2.3) BS02 CA 3.2.1.18 GO:0004308 ... Q6WJ03 14729348
    5321 1v3c:B (2.3) BS02 CA 3.2.1.18 GO:0004308 ... Q6WJ03 14729348
    5322 1v3d:A (2.28) BS01 CA 3.2.1.18 GO:0004308 ... Q6WJ03 14729348
    5323 1v3d:B (2.28) BS01 CA 3.2.1.18 GO:0004308 ... Q6WJ03 14729348
    5324 1v3e:A (1.89) BS01 CA 3.2.1.18 GO:0004308 ... Q6WJ03 14729348
    5325 1v3e:B (1.89) BS01 CA 3.2.1.18 GO:0004308 ... Q6WJ03 14729348
    5326 1v3j:A (2.0) BS01 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5327 1v3j:A (2.0) BS02 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5328 1v3j:B (2.0) BS01 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5329 1v3j:B (2.0) BS02 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5330 1v3k:A (2.0) BS01 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5331 1v3k:A (2.0) BS02 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5332 1v3k:B (2.0) BS01 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5333 1v3k:B (2.0) BS02 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5334 1v3l:A (2.1) BS04 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5335 1v3l:A (2.1) BS05 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5336 1v3l:B (2.1) BS03 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5337 1v3l:B (2.1) BS04 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5338 1v3m:A (2.0) BS08 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5339 1v3m:A (2.0) BS09 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5340 1v3m:B (2.0) BS08 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5341 1v3m:B (2.0) BS09 CA 2.4.1.19 GO:0003824 ... P05618 14739329
    5342 1v3w:A (1.5) BS02 CA 4.2.1.1 GO:0046872 ... O59257 18931408
    5343 1v3x:A (2.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 15456260
    5344 1v3x:A (2.2) BS02 CA 3.4.21.6 GO:0004252 ... P00742 15456260
    5345 1v5i:A (1.5) BS01 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    5346 1v67:A (2.3) BS02 CA 4.2.1.1 GO:0046872 ... O59257 18931408
    5347 1v6c:A (1.8) BS01 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    5348 1v6c:A (1.8) BS02 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    5349 1v6c:A (1.8) BS03 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    5350 1v6c:B (1.8) BS01 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    5351 1v6c:B (1.8) BS02 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    5352 1v6c:B (1.8) BS03 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    5353 1v6d:A (1.9) BS02 CA 3.4.21.4 GO:0004252 ... P00761 15842169
    5354 1v6i:A (2.15) BS02 CA ? GO:0030246 ... P02872 14747696
    5355 1v6i:B (2.15) BS03 CA ? GO:0030246 ... P02872 14747696
    5356 1v6i:C (2.15) BS03 CA ? GO:0030246 ... P02872 14747696
    5357 1v6i:D (2.15) BS03 CA ? GO:0030246 ... P02872 14747696
    5358 1v6j:A (2.9) BS03 CA ? GO:0030246 ... P02872 14747696
    5359 1v6j:B (2.9) BS02 CA ? GO:0030246 ... P02872 14747696
    5360 1v6j:C (2.9) BS03 CA ? GO:0030246 ... P02872 14747696
    5361 1v6j:D (2.9) BS03 CA ? GO:0030246 ... P02872 14747696
    5362 1v6k:A (2.4) BS03 CA ? GO:0030246 ... P02872 14747696
    5363 1v6k:B (2.4) BS03 CA ? GO:0030246 ... P02872 14747696
    5364 1v6k:C (2.4) BS03 CA ? GO:0030246 ... P02872 14747696
    5365 1v6k:D (2.4) BS03 CA ? GO:0030246 ... P02872 14747696
    5366 1v6l:A (2.5) BS03 CA ? GO:0030246 ... P02872 14747696
    5367 1v6l:B (2.5) BS03 CA ? GO:0030246 ... P02872 14747696
    5368 1v6l:C (2.5) BS03 CA ? GO:0030246 ... P02872 14747696
    5369 1v6l:D (2.5) BS03 CA ? GO:0030246 ... P02872 14747696
    5370 1v6m:A (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    5371 1v6m:B (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    5372 1v6m:C (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    5373 1v6m:D (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    5374 1v6m:E (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    5375 1v6m:F (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    5376 1v6m:G (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    5377 1v6m:H (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    5378 1v6n:A (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    5379 1v6n:B (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    5380 1v6n:C (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    5381 1v6n:D (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    5382 1v6n:E (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    5383 1v6n:F (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    5384 1v6n:G (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    5385 1v6n:H (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    5386 1v6o:A (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    5387 1v6o:B (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    5388 1v6o:C (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    5389 1v6o:D (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    5390 1v6o:E (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    5391 1v6o:F (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    5392 1v6o:G (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    5393 1v6o:H (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    5394 1v73:A (1.82) BS01 CA 3.1.3.48 GO:0004725 ... Q9S427 15713885
    5395 1v73:A (1.82) BS02 CA 3.1.3.48 GO:0004725 ... Q9S427 15713885
    5396 1v7v:A (1.8) BS01 CA 2.4.1.280 GO:0003824 ... Q76IQ9 15274915
    5397 1v7v:A (1.8) BS02 CA 2.4.1.280 GO:0003824 ... Q76IQ9 15274915
    5398 1v7w:A (1.6) BS01 CA 2.4.1.280 GO:0003824 ... Q76IQ9 15274915
    5399 1v7w:A (1.6) BS02 CA 2.4.1.280 GO:0003824 ... Q76IQ9 15274915
    5400 1v7x:A (2.0) BS01 CA 2.4.1.280 GO:0003824 ... Q76IQ9 15274915

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218