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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5001 1tzn:A (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    5002 1tzn:B (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    5003 1tzn:B (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    5004 1tzn:C (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    5005 1tzn:C (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    5006 1tzn:D (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    5007 1tzn:D (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    5008 1tzn:E (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    5009 1tzn:E (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    5010 1tzn:F (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    5011 1tzn:F (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    5012 1tzn:G (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    5013 1tzn:G (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    5014 1tzn:H (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    5015 1tzn:H (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    5016 1tzn:I (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    5017 1tzn:I (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    5018 1tzn:J (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    5019 1tzn:J (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    5020 1tzn:K (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    5021 1tzn:K (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    5022 1tzn:L (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    5023 1tzn:L (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    5024 1tzn:M (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    5025 1tzn:M (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    5026 1tzn:O (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    5027 1tzn:O (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    5028 1tzo:A (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    5029 1tzo:A (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    5030 1tzo:B (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    5031 1tzo:B (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    5032 1tzo:C (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    5033 1tzo:C (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    5034 1tzo:D (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    5035 1tzo:D (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    5036 1tzo:E (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    5037 1tzo:E (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    5038 1tzo:F (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    5039 1tzo:F (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    5040 1tzo:G (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    5041 1tzo:G (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    5042 1tzo:H (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    5043 1tzo:H (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    5044 1tzo:I (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    5045 1tzo:I (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    5046 1tzo:J (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    5047 1tzo:J (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    5048 1tzo:K (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    5049 1tzo:K (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    5050 1tzo:L (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    5051 1tzo:L (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    5052 1tzo:M (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    5053 1tzo:M (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    5054 1tzo:O (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    5055 1tzo:O (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    5056 1u0a:A (1.64) BS05 CA 3.2.1.73 GO:0004553 ... P23904 16483609
    5057 1u0a:B (1.64) BS04 CA 3.2.1.73 GO:0004553 ... P23904 16483609
    5058 1u0a:C (1.64) BS05 CA 3.2.1.73 GO:0004553 ... P23904 16483609
    5059 1u0a:D (1.64) BS05 CA 3.2.1.73 GO:0004553 ... P23904 16483609
    5060 1u2y:A (1.95) BS01 CA 3.2.1.1 GO:0003824 ... P04746 15304511
    5061 1u30:A (1.9) BS02 CA 3.2.1.1 GO:0003824 ... P04746 15304511
    5062 1u33:A (1.95) BS02 CA 3.2.1.1 GO:0003824 ... P04746 15304511
    5063 1u4g:A (1.4) BS02 CA 3.4.24.26 GO:0004222 ... P14756 N/A
    5064 1u5q:A (2.1) BS01 CA 2.7.11.1 GO:0004672 ... Q9JLS3 15458637
    5065 1u5q:B (2.1) BS01 CA 2.7.11.1 GO:0004672 ... Q9JLS3 15458637
    5066 1u5r:A (2.1) BS02 CA 2.7.11.1 GO:0004672 ... Q9JLS3 15458637
    5067 1u5r:B (2.1) BS02 CA 2.7.11.1 GO:0004672 ... Q9JLS3 15458637
    5068 1u8c:A (3.1) BS01 CA ? GO:0001525 ... P06756 15299032
    5069 1u8c:A (3.1) BS02 CA ? GO:0001525 ... P06756 15299032
    5070 1u8c:A (3.1) BS03 CA ? GO:0001525 ... P06756 15299032
    5071 1u8c:A (3.1) BS04 CA ? GO:0001525 ... P06756 15299032
    5072 1u8c:A (3.1) BS05 CA ? GO:0001525 ... P06756 15299032
    5073 1u8c:B (3.1) BS01 CA ? GO:0001618 ... P05106 15299032
    5074 1u94:A (1.9) BS01 CA ? GO:0000725 ... P0A7G6 15364575
    5075 1ua3:A (2.01) BS09 CA 3.2.1.1 GO:0003824 ... P00690 12962327
    5076 1ua7:A (2.21) BS07 CA 3.2.1.1 GO:0003824 ... P00691 14617662
    5077 1ua7:A (2.21) BS08 CA 3.2.1.1 GO:0003824 ... P00691 14617662
    5078 1ua7:A (2.21) BS09 CA 3.2.1.1 GO:0003824 ... P00691 14617662
    5079 1ubn:A (2.4) BS01 CA 3.4.21.62 GO:0004252 ... P00782 10350485
    5080 1ubn:A (2.4) BS02 CA 3.4.21.62 GO:0004252 ... P00782 10350485
    5081 1ucn:A (2.0) BS02 CA 2.7.4.6 GO:0000287 ... P15531 12972261
    5082 1uea:A (2.8) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    5083 1uea:A (2.8) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    5084 1uea:A (2.8) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    5085 1uea:C (2.8) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    5086 1uea:C (2.8) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    5087 1uea:C (2.8) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    5088 1uet:A (2.0) BS02 CA 2.7.7.72 GO:0000049 ... O28126 14592988
    5089 1uf3:A (2.1) BS01 CA ? GO:0046872 ... P84068 N/A
    5090 1uf3:A (2.1) BS02 CA ? GO:0046872 ... P84068 N/A
    5091 1uf3:B (2.1) BS01 CA ? GO:0046872 ... P84068 N/A
    5092 1uf3:C (2.1) BS01 CA ? GO:0046872 ... P84068 N/A
    5093 1uf3:D (2.1) BS01 CA ? GO:0046872 ... P84068 N/A
    5094 1uf3:D (2.1) BS02 CA ? GO:0046872 ... P84068 N/A
    5095 1uf3:E (2.1) BS01 CA ? GO:0046872 ... P84068 N/A
    5096 1uf3:F (2.1) BS01 CA ? GO:0046872 ... P84068 N/A
    5097 1uf3:F (2.1) BS02 CA ? GO:0046872 ... P84068 N/A
    5098 1uf3:G (2.1) BS01 CA ? GO:0046872 ... P84068 N/A
    5099 1uf3:H (2.1) BS01 CA ? GO:0046872 ... P84068 N/A
    5100 1ug9:A (2.5) BS01 CA 3.2.1.70 GO:0003824 ... Q9LBQ9 14660574
    5101 1ug9:A (2.5) BS02 CA 3.2.1.70 GO:0003824 ... Q9LBQ9 14660574
    5102 1ug9:A (2.5) BS03 CA 3.2.1.70 GO:0003824 ... Q9LBQ9 14660574
    5103 1ug9:A (2.5) BS04 CA 3.2.1.70 GO:0003824 ... Q9LBQ9 14660574
    5104 1ug9:A (2.5) BS05 CA 3.2.1.70 GO:0003824 ... Q9LBQ9 14660574
    5105 1ug9:A (2.5) BS06 CA 3.2.1.70 GO:0003824 ... Q9LBQ9 14660574
    5106 1uh2:A (2.0) BS09 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    5107 1uh2:A (2.0) BS10 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    5108 1uh2:A (2.0) BS11 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    5109 1uh3:A (2.6) BS14 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    5110 1uh3:A (2.6) BS15 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    5111 1uh3:A (2.6) BS16 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    5112 1uh4:A (1.8) BS14 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    5113 1uh4:A (1.8) BS15 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    5114 1uh4:A (1.8) BS16 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    5115 1uha:A (1.5) BS01 CA ? GO:0008061 ... P83790 15039554
    5116 1uhb:A (2.15) BS02 CA 3.4.21.4 GO:0004252 ... P00761 15106996
    5117 1uhn:A (2.1) BS01 CA ? GO:0005509 ... Q8LAS7 12871972
    5118 1uhn:A (2.1) BS02 CA ? GO:0005509 ... Q8LAS7 12871972
    5119 1uis:A (2.0) BS01 CA ? GO:0006091 ... Q8ISF8 12909624
    5120 1uis:B (2.0) BS01 CA ? GO:0006091 ... Q8ISF8 12909624
    5121 1ukg:A (1.7) BS03 CA ? GO:0030246 ... Q8GSD2 14729339
    5122 1ukg:B (1.7) BS03 CA ? GO:0030246 ... Q8GSD2 14729339
    5123 1ukq:A (2.0) BS05 CA 2.4.1.19 GO:0003824 ... P05618 14769878
    5124 1ukq:A (2.0) BS06 CA 2.4.1.19 GO:0003824 ... P05618 14769878
    5125 1ukq:B (2.0) BS05 CA 2.4.1.19 GO:0003824 ... P05618 14769878
    5126 1ukq:B (2.0) BS06 CA 2.4.1.19 GO:0003824 ... P05618 14769878
    5127 1uks:A (1.9) BS05 CA 2.4.1.19 GO:0003824 ... P05618 14769878
    5128 1uks:A (1.9) BS06 CA 2.4.1.19 GO:0003824 ... P05618 14769878
    5129 1uks:B (1.9) BS04 CA 2.4.1.19 GO:0003824 ... P05618 14769878
    5130 1uks:B (1.9) BS05 CA 2.4.1.19 GO:0003824 ... P05618 14769878
    5131 1ukt:A (2.2) BS02 CA 2.4.1.19 GO:0003824 ... P05618 14769878
    5132 1ukt:A (2.2) BS03 CA 2.4.1.19 GO:0003824 ... P05618 14769878
    5133 1ukt:B (2.2) BS03 CA 2.4.1.19 GO:0003824 ... P05618 14769878
    5134 1ukt:B (2.2) BS04 CA 2.4.1.19 GO:0003824 ... P05618 14769878
    5135 1ul3:B (2.0) BS01 CA ? GO:0000166 ... Q55247 14646076
    5136 1ul3:C (2.0) BS01 CA ? GO:0000166 ... Q55247 14646076
    5137 1ulv:A (2.42) BS03 CA 3.2.1.70 GO:0003824 ... Q9LBQ9 14660574
    5138 1ulv:A (2.42) BS04 CA 3.2.1.70 GO:0003824 ... Q9LBQ9 14660574
    5139 1ulv:A (2.42) BS05 CA 3.2.1.70 GO:0003824 ... Q9LBQ9 14660574
    5140 1ulv:A (2.42) BS06 CA 3.2.1.70 GO:0003824 ... Q9LBQ9 14660574
    5141 1ulv:A (2.42) BS07 CA 3.2.1.70 GO:0003824 ... Q9LBQ9 14660574
    5142 1ulv:A (2.42) BS08 CA 3.2.1.70 GO:0003824 ... Q9LBQ9 14660574
    5143 1umn:K (1.95) BS01 CA 1.16.-.- GO:0005737 ... P0CB53 15081812
    5144 1ums:A (-1.00) BS03 CA 3.4.24.17 GO:0004222 ... P08254 8580839
    5145 1umt:A (-1.00) BS03 CA 3.4.24.17 GO:0004222 ... P08254 8580839
    5146 1umv:X (1.79) BS01 CA 3.1.1.4 GO:0004623 ... Q8AXY1 15351695
    5147 1une:A (1.5) BS01 CA 3.1.1.4 GO:0002227 ... P00593 10089393
    5148 1uoc:A (2.3) BS01 CA 3.1.13.4 GO:0003676 ... P39008 14618157
    5149 1uoc:B (2.3) BS01 CA 3.1.13.4 GO:0003676 ... P39008 14618157
    5150 1uov:A (1.65) BS01 CA ? GO:0016020 ... P21707 15340165
    5151 1uov:A (1.65) BS02 CA ? GO:0016020 ... P21707 15340165
    5152 1uov:A (1.65) BS03 CA ? GO:0016020 ... P21707 15340165
    5153 1uow:A (1.04) BS01 CA ? GO:0016020 ... P21707 15340165
    5154 1uow:A (1.04) BS02 CA ? GO:0016020 ... P21707 15340165
    5155 1up5:A (1.9) BS01 CA ? GO:0005509 ... P62149 15299715
    5156 1up5:A (1.9) BS02 CA ? GO:0005509 ... P62149 15299715
    5157 1up5:A (1.9) BS03 CA ? GO:0005509 ... P62149 15299715
    5158 1up5:A (1.9) BS04 CA ? GO:0005509 ... P62149 15299715
    5159 1up5:B (1.9) BS01 CA ? GO:0005509 ... P62149 15299715
    5160 1up5:B (1.9) BS02 CA ? GO:0005509 ... P62149 15299715
    5161 1up5:B (1.9) BS03 CA ? GO:0005509 ... P62149 15299715
    5162 1up5:B (1.9) BS04 CA ? GO:0005509 ... P62149 15299715
    5163 1up8:A (2.2) BS01 CA 1.11.1.18 GO:0004601 ... O81959 15776268
    5164 1up8:B (2.2) BS01 CA 1.11.1.18 GO:0004601 ... O81959 15776268
    5165 1up8:C (2.2) BS01 CA 1.11.1.18 GO:0004601 ... O81959 15776268
    5166 1up8:D (2.2) BS01 CA 1.11.1.18 GO:0004601 ... O81959 15776268
    5167 1upm:B (2.3) BS01 CA 4.1.1.39 GO:0000287 ... P00875 14596800
    5168 1upm:E (2.3) BS01 CA 4.1.1.39 GO:0000287 ... P00875 14596800
    5169 1upm:H (2.3) BS02 CA 4.1.1.39 GO:0000287 ... P00875 14596800
    5170 1upm:K (2.3) BS01 CA 4.1.1.39 GO:0000287 ... P00875 14596800
    5171 1upm:L (2.3) BS02 CA 4.1.1.39 GO:0000287 ... P00875 14596800
    5172 1upm:O (2.3) BS02 CA 4.1.1.39 GO:0000287 ... P00875 14596800
    5173 1upm:R (2.3) BS01 CA 4.1.1.39 GO:0000287 ... P00875 14596800
    5174 1upm:V (2.3) BS02 CA 4.1.1.39 GO:0000287 ... P00875 14596800
    5175 1upp:A (2.3) BS01 CA 4.1.1.39 GO:0000287 ... P00875 14596800
    5176 1upp:C (2.3) BS01 CA 4.1.1.39 GO:0000287 ... P00875 14596800
    5177 1upp:E (2.3) BS01 CA 4.1.1.39 GO:0000287 ... P00875 14596800
    5178 1upp:G (2.3) BS01 CA 4.1.1.39 GO:0000287 ... P00875 14596800
    5179 1ups:A (1.82) BS01 CA ? GO:0004553 ... Q934G8 15688452
    5180 1ups:B (1.82) BS01 CA ? GO:0004553 ... Q934G8 15688452
    5181 1uqx:A (1.7) BS01 CA ? GO:0046872 ... Q8XUA5 15101976
    5182 1uqx:A (1.7) BS02 CA ? GO:0046872 ... Q8XUA5 15101976
    5183 1ur0:A (2.5) BS04 CA 3.2.1.-
    3.2.1.89
    GO:0015926 ... Q65CX5 15312766
    5184 1ur0:B (2.5) BS04 CA 3.2.1.-
    3.2.1.89
    GO:0015926 ... Q65CX5 15312766
    5185 1ur4:A (2.2) BS03 CA 3.2.1.-
    3.2.1.89
    GO:0015926 ... Q65CX5 15312766
    5186 1ur4:B (2.2) BS03 CA 3.2.1.-
    3.2.1.89
    GO:0015926 ... Q65CX5 15312766
    5187 1urx:A (1.7) BS09 CA 3.2.1.81 GO:0004553 ... G0L322 15062085
    5188 1us1:A (2.9) BS02 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    5189 1us1:A (2.9) BS03 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    5190 1us1:B (2.9) BS02 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    5191 1us1:B (2.9) BS03 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    5192 1usn:A (1.8) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9792098
    5193 1usn:A (1.8) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9792098
    5194 1usn:A (1.8) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9792098
    5195 1usr:A (2.0) BS03 CA 3.2.1.18 GO:0004308 ... P32884 15016893
    5196 1usr:B (2.0) BS04 CA 3.2.1.18 GO:0004308 ... P32884 15016893
    5197 1utj:A (1.83) BS02 CA 3.4.21.4 GO:0004252 ... P35031 15044735
    5198 1utk:A (1.53) BS01 CA 3.4.21.4 GO:0004252 ... P35031 15044735
    5199 1utl:M (1.7) BS02 CA 3.4.21.4 GO:0004252 ... P35031 15044735
    5200 1utm:A (1.5) BS02 CA 3.4.21.4 GO:0004252 ... P35031 15044735

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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